summaryrefslogtreecommitdiff
diff options
context:
space:
mode:
authorRicardo Wurmus <rekado@elephly.net>2019-04-03 16:29:49 +0200
committerRicardo Wurmus <rekado@elephly.net>2019-04-03 17:42:18 +0200
commit9800d859a74faba183f6d6e3d2957f4e0c5002e5 (patch)
tree0b0ffb3f5ee057f3596a283940f5a13d8e2097f2
parent6b12f213633e035e8b6eb61c36cfdbd19b434754 (diff)
downloadpatches-9800d859a74faba183f6d6e3d2957f4e0c5002e5.tar
patches-9800d859a74faba183f6d6e3d2957f4e0c5002e5.tar.gz
gnu: Add r-zfpkm.
* gnu/packages/bioconductor.scm (r-zfpkm): New variable.
-rw-r--r--gnu/packages/bioconductor.scm27
1 files changed, 27 insertions, 0 deletions
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 7928a10679..3800c2472e 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -4152,3 +4152,30 @@ analysis using several of the Bioconductor packages. It is intended to be
deployed as a centralized bioinformatics resource for use by many users.
Currently only Affymetrix oligonucleotide analysis is supported.")
(license license:gpl2+)))
+
+(define-public r-zfpkm
+ (package
+ (name "r-zfpkm")
+ (version "1.4.1")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "zFPKM" version))
+ (sha256
+ (base32
+ "0rvfrjxxvfng9fxxn316gm96v4rahx62vlk3axr2bzjbi1r4s8v5"))))
+ (properties `((upstream-name . "zFPKM")))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-checkmate" ,r-checkmate)
+ ("r-dplyr" ,r-dplyr)
+ ("r-ggplot2" ,r-ggplot2)
+ ("r-summarizedexperiment" ,r-summarizedexperiment)
+ ("r-tidyr" ,r-tidyr)))
+ (home-page "https://github.com/ronammar/zFPKM/")
+ (synopsis "Functions to facilitate zFPKM transformations")
+ (description
+ "This is a package to perform the zFPKM transform on RNA-seq FPKM data.
+This algorithm is based on the publication by Hart et al., 2013 (Pubmed ID
+24215113).")
+ (license license:gpl3)))