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| author | Ben Woodcroft <donttrustben@gmail.com> | 2016-07-12 16:02:45 +1000 |
|---|---|---|
| committer | Ben Woodcroft <donttrustben@gmail.com> | 2016-08-08 22:08:17 +1000 |
| commit | 159a70167883b0b4d5237b7ef3493b54356f362e (patch) | |
| tree | 306f91ed567711fe92dc3e0f0f9b042336b8670a | |
| parent | 8b5f4d57005569ee2f1b68a151f5ce8d50a1e17a (diff) | |
| download | patches-159a70167883b0b4d5237b7ef3493b54356f362e.tar patches-159a70167883b0b4d5237b7ef3493b54356f362e.tar.gz | |
gnu: Add bpp-popgen.
* gnu/packages/bioinformatics.scm (bpp-popgen): New variable.
| -rw-r--r-- | gnu/packages/bioinformatics.scm | 33 |
1 files changed, 33 insertions, 0 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 0b8424aa34..78347331dc 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -592,6 +592,39 @@ analysis, phylogenetics, molecular evolution and population genetics. This library provides phylogenetics-related modules.") (license license:cecill-c)))) +(define-public bpp-popgen + ;; The last release was in 2014 and the recommended way to install from source + ;; is to clone the git repository, so we do this. + ;; http://biopp.univ-montp2.fr/wiki/index.php/Main_Page + (let ((commit "e472bac9b1a148803895d747cd6d0c5904f85d9f")) + (package + (name "bpp-popgen") + (version (string-append "2.2.0-1." (string-take commit 7))) + (source (origin + (method git-fetch) + (uri (git-reference + (url "http://biopp.univ-montp2.fr/git/bpp-popgen") + (commit commit))) + (file-name (string-append name "-" version "-checkout")) + (sha256 + (base32 + "0yn82dzn1n5629nzja68xfrhi655709rjanyryb36vzkmymy6dw5")))) + (build-system cmake-build-system) + (arguments + `(#:parallel-build? #f + #:tests? #f)) ; There are no tests. + (inputs + `(("bpp-core" ,bpp-core) + ("bpp-seq" ,bpp-seq) + ("gcc" ,gcc-5))) + (home-page "http://biopp.univ-montp2.fr") + (synopsis "Bio++ population genetics library") + (description + "Bio++ is a set of C++ libraries for Bioinformatics, including sequence +analysis, phylogenetics, molecular evolution and population genetics. This +library provides population genetics-related modules.") + (license license:cecill-c)))) + (define-public bpp-seq ;; The last release was in 2014 and the recommended way to install from source ;; is to clone the git repository, so we do this. |