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| author | Ricardo Wurmus <ricardo.wurmus@mdc-berlin.de> | 2018-07-04 17:45:08 +0200 |
|---|---|---|
| committer | Ricardo Wurmus <rekado@elephly.net> | 2018-07-05 15:08:44 +0200 |
| commit | f4235c0eca46a59c3a71e9977efcbed6248901cf (patch) | |
| tree | d6ff48d7d5a95d62f9682f31b74e256f6d22949e | |
| parent | 5da0e1428568be137054cb1fe220c28cd42f9eec (diff) | |
| download | patches-f4235c0eca46a59c3a71e9977efcbed6248901cf.tar patches-f4235c0eca46a59c3a71e9977efcbed6248901cf.tar.gz | |
gnu: Add r-glimma.
* gnu/packages/bioconductor.scm (r-glimma): New variable.
| -rw-r--r-- | gnu/packages/bioconductor.scm | 30 |
1 files changed, 29 insertions, 1 deletions
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index 40ac1d2015..611fd99336 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -28,7 +28,8 @@ #:use-module (gnu packages cran) #:use-module (gnu packages compression) #:use-module (gnu packages graph) - #:use-module (gnu packages statistics)) + #:use-module (gnu packages statistics) + #:use-module (gnu packages web)) (define-public r-bsgenome-dmelanogaster-ucsc-dm6 (package @@ -750,3 +751,30 @@ trees and clusters to other programs.") "This package provides tools to detect Gene Ontology and/or other user defined categories which are over/under represented in RNA-seq data.") (license license:lgpl2.0+))) + +(define-public r-glimma + (package + (name "r-glimma") + (version "1.8.2") + (source + (origin + (method url-fetch) + (uri (bioconductor-uri "Glimma" version)) + (sha256 + (base32 + "0kfia60vrlys6amdchdix01iwbkwyb7nfjqn5hczsxp8rhmbg25s")))) + (properties `((upstream-name . "Glimma"))) + (build-system r-build-system) + (propagated-inputs + `(("r-edger" ,r-edger) + ("r-jsonlite" ,r-jsonlite) + ("r-s4vectors" ,r-s4vectors))) + (home-page "https://github.com/Shians/Glimma") + (synopsis "Interactive HTML graphics") + (description + "This package generates interactive visualisations for analysis of +RNA-sequencing data using output from limma, edgeR or DESeq2 packages in an +HTML page. The interactions are built on top of the popular static +representations of analysis results in order to provide additional +information.") + (license license:lgpl3))) |