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| author | Ricardo Wurmus <ricardo.wurmus@mdc-berlin.de> | 2018-07-04 17:44:47 +0200 |
|---|---|---|
| committer | Ricardo Wurmus <rekado@elephly.net> | 2018-07-05 15:08:44 +0200 |
| commit | 5da0e1428568be137054cb1fe220c28cd42f9eec (patch) | |
| tree | 86ec73f34b5e00c3bbef3850bac3beb6cae6950e | |
| parent | 27c51606ae44f682dfba5363757bead223b57c5d (diff) | |
| download | patches-5da0e1428568be137054cb1fe220c28cd42f9eec.tar patches-5da0e1428568be137054cb1fe220c28cd42f9eec.tar.gz | |
gnu: Add r-goseq.
* gnu/packages/bioconductor.scm (r-goseq): New variable.
| -rw-r--r-- | gnu/packages/bioconductor.scm | 26 |
1 files changed, 26 insertions, 0 deletions
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index 882e3e14dd..40ac1d2015 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -724,3 +724,29 @@ information and producing various plots and statistics.") "This package provides tools for exporting and importing classification trees and clusters to other programs.") (license license:gpl2))) + +(define-public r-goseq + (package + (name "r-goseq") + (version "1.32.0") + (source + (origin + (method url-fetch) + (uri (bioconductor-uri "goseq" version)) + (sha256 + (base32 + "0xmbb8ma32lrfy810r82y34gkspq4fqiqxykic9j4rq9rg9n9x2l")))) + (build-system r-build-system) + (propagated-inputs + `(("r-annotationdbi" ,r-annotationdbi) + ("r-biasedurn" ,r-biasedurn) + ("r-biocgenerics" ,r-biocgenerics) + ("r-genelendatabase" ,r-genelendatabase) + ("r-go-db" ,r-go-db) + ("r-mgcv" ,r-mgcv))) + (home-page "https://bioconductor.org/packages/goseq/") + (synopsis "Gene Ontology analyser for RNA-seq and other length biased data") + (description + "This package provides tools to detect Gene Ontology and/or other user +defined categories which are over/under represented in RNA-seq data.") + (license license:lgpl2.0+))) |