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authorRicardo Wurmus <rekado@elephly.net>2016-07-12 12:19:15 +0200
committerRicardo Wurmus <rekado@elephly.net>2016-07-12 12:19:15 +0200
commit9a8f309cf1f654b9775caf0ee1bc65ee274d4117 (patch)
tree0a92442c91b301002ef08366febd2a60375b4502
parent34c553b07e0385cb6f59efe075e036bd3297d049 (diff)
downloadpatches-9a8f309cf1f654b9775caf0ee1bc65ee274d4117.tar
patches-9a8f309cf1f654b9775caf0ee1bc65ee274d4117.tar.gz
gnu: Add bedtools-2.18.
* gnu/packages/bioinformatics.scm (bedtools-2.18): New variable.
-rw-r--r--gnu/packages/bioinformatics.scm15
1 files changed, 15 insertions, 0 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 5ab3bcc3ae..355b578623 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -258,6 +258,21 @@ intervals from multiple files in widely-used genomic file formats such as BAM,
BED, GFF/GTF, VCF.")
(license license:gpl2)))
+;; Later releases of bedtools produce files with more columns than
+;; what Ribotaper expects.
+(define-public bedtools-2.18
+ (package (inherit bedtools)
+ (name "bedtools")
+ (version "2.18.0")
+ (source (origin
+ (method url-fetch)
+ (uri (string-append "https://github.com/arq5x/bedtools2/"
+ "archive/v" version ".tar.gz"))
+ (file-name (string-append name "-" version ".tar.gz"))
+ (sha256
+ (base32
+ "05vrnr8yp7swfagshzpgqmzk1blnwnq8pq5pckzi1m26w98d63vf"))))))
+
(define-public bioawk
(package
(name "bioawk")