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| author | Ricardo Wurmus <rekado@elephly.net> | 2019-12-04 09:34:13 +0100 |
|---|---|---|
| committer | Ricardo Wurmus <rekado@elephly.net> | 2019-12-04 09:34:13 +0100 |
| commit | c271d9902553771119c292a92caffe06253c895f (patch) | |
| tree | 35d549d5f66759292b8cee57ee84e743965de604 | |
| parent | 1afdf41b4984dfe09807583a0ee38bdff3579fa2 (diff) | |
| download | patches-c271d9902553771119c292a92caffe06253c895f.tar patches-c271d9902553771119c292a92caffe06253c895f.tar.gz | |
gnu: r-txdb-mmusculus-ucsc-mm10-knowngene: Use bioconductor-uri.
* gnu/packages/bioconductor.scm (r-txdb-mmusculus-ucsc-mm10-knowngene)[source]:
Use bioconductor-uri.
[arguments]: Enable substitution.
| -rw-r--r-- | gnu/packages/bioconductor.scm | 11 |
1 files changed, 2 insertions, 9 deletions
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index 42a3f7bb23..262618cf9e 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -573,21 +573,14 @@ database is exposed as a @code{TxDb} object.") (version "3.4.7") (source (origin (method url-fetch) - ;; We cannot use bioconductor-uri here because this tarball is - ;; located under "data/annotation/" instead of "bioc/". - (uri (string-append "https://www.bioconductor.org/packages/" - "release/data/annotation/src/contrib/" - "TxDb.Mmusculus.UCSC.mm10.knownGene_" - version ".tar.gz")) + (uri (bioconductor-uri "TxDb.Mmusculus.UCSC.mm10.knownGene" + version 'annotation)) (sha256 (base32 "04impkl8zh1gpwwrpbf19jqznsjrq2306yyhm6cmx6hr1401bd6b")))) (properties `((upstream-name . "TxDb.Mmusculus.UCSC.mm10.knownGene"))) (build-system r-build-system) - ;; As this package provides little more than a very large data file it - ;; doesn't make sense to build substitutes. - (arguments `(#:substitutable? #f)) (propagated-inputs `(("r-bsgenome" ,r-bsgenome) ("r-genomicfeatures" ,r-genomicfeatures) |