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authorRicardo Wurmus <rekado@elephly.net>2017-11-07 15:33:13 +0100
committerRicardo Wurmus <rekado@elephly.net>2017-11-07 23:32:42 +0100
commit2f6f61fd8e9c5e1dbc2c1873f389e3586261d8cb (patch)
tree39095386a4209aa272fbe1335d98f9400998a2a3
parentaa30ab5aeebc14376ccc29a68d8b4e4fb8184fca (diff)
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patches-2f6f61fd8e9c5e1dbc2c1873f389e3586261d8cb.tar.gz
gnu: Add r-organismdbi.
* gnu/packages/bioinformatics.scm (r-organismdbi): New variable.
-rw-r--r--gnu/packages/bioinformatics.scm32
1 files changed, 32 insertions, 0 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index b6a3aa9722..b0738c6573 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -9643,6 +9643,38 @@ chromosome region or transcript models of lincRNA genes.")
;; No version specified
(license license:lgpl3+)))
+(define-public r-organismdbi
+ (package
+ (name "r-organismdbi")
+ (version "1.20.0")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "OrganismDbi" version))
+ (sha256
+ (base32
+ "0yxvhwn0m53wfwp0zi81x96argdf7cf1lpymc2as51apvfcnjdl8"))))
+ (properties `((upstream-name . "OrganismDbi")))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-annotationdbi" ,r-annotationdbi)
+ ("r-biobase" ,r-biobase)
+ ("r-biocgenerics" ,r-biocgenerics)
+ ("r-biocinstaller" ,r-biocinstaller)
+ ("r-dbi" ,r-dbi)
+ ("r-genomicfeatures" ,r-genomicfeatures)
+ ("r-genomicranges" ,r-genomicranges)
+ ("r-graph" ,r-graph)
+ ("r-iranges" ,r-iranges)
+ ("r-rbgl" ,r-rbgl)
+ ("r-s4vectors" ,r-s4vectors)))
+ (home-page "https://bioconductor.org/packages/OrganismDbi")
+ (synopsis "Software to enable the smooth interfacing of database packages")
+ (description "The package enables a simple unified interface to several
+annotation packages each of which has its own schema by taking advantage of
+the fact that each of these packages implements a select methods.")
+ (license license:artistic2.0)))
+
(define-public r-qvalue
(package
(name "r-qvalue")