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| author | Ben Woodcroft <donttrustben@gmail.com> | 2017-06-26 21:07:10 +1000 |
|---|---|---|
| committer | Ben Woodcroft <donttrustben@gmail.com> | 2017-07-23 10:29:35 +1000 |
| commit | bca2c57658db1fdccca996cd59a3b43f739f0d87 (patch) | |
| tree | 5a3e3d71f1a51ea04704f9e36d6a00052fcd022a | |
| parent | 98593f9f51c8f6e3c2208d8443fdf08cf4d633bb (diff) | |
| download | patches-bca2c57658db1fdccca996cd59a3b43f739f0d87.tar patches-bca2c57658db1fdccca996cd59a3b43f739f0d87.tar.gz | |
gnu: bamm: Use htslib-1.3.
* gnu/packages/bioinformatics (htslib-1.3): New variable.
(bamm)[inputs]: Replace htslib with htslib-1.3.
| -rw-r--r-- | gnu/packages/bioinformatics.scm | 16 |
1 files changed, 15 insertions, 1 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 87da4aed15..53239cb697 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -248,7 +248,7 @@ structure of the predicted RNA.") ("python-nose" ,python2-nose) ("python-pysam" ,python2-pysam))) (inputs - `(("htslib" ,htslib) + `(("htslib" ,htslib-1.3) ; At least one test fails on htslib-1.4+. ("samtools" ,samtools) ("bwa" ,bwa) ("grep" ,grep) @@ -3079,6 +3079,20 @@ data. It also provides the bgzip, htsfile, and tabix utilities.") ;; the rest is released under the Expat license (license (list license:expat license:bsd-3)))) +;; This package should be removed once no packages rely upon it. +(define htslib-1.3 + (package + (inherit htslib) + (version "1.3.1") + (source (origin + (method url-fetch) + (uri (string-append + "https://github.com/samtools/htslib/releases/download/" + version "/htslib-" version ".tar.bz2")) + (sha256 + (base32 + "1rja282fwdc25ql6izkhdyh8ppw8x2fs0w0js78zgkmqjlikmma9")))))) + (define-public idr (package (name "idr") |