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| author | Ricardo Wurmus <ricardo.wurmus@mdc-berlin.de> | 2016-03-11 17:01:00 +0100 |
|---|---|---|
| committer | Ricardo Wurmus <ricardo.wurmus@mdc-berlin.de> | 2016-03-14 12:36:49 +0100 |
| commit | 846e3409540241a05ed10f36e1a4a9b049ad5810 (patch) | |
| tree | c01038e628d7f4c568c7662c0a62a78ae6254764 | |
| parent | 388e05ee1689787adc1dd2eeb57f2360fe4663f2 (diff) | |
| download | patches-846e3409540241a05ed10f36e1a4a9b049ad5810.tar patches-846e3409540241a05ed10f36e1a4a9b049ad5810.tar.gz | |
gnu: Add pyicoteo.
* gnu/packages/bioinformatics.scm (pyicoteo): New variable.
| -rw-r--r-- | gnu/packages/bioinformatics.scm | 38 |
1 files changed, 38 insertions, 0 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index b3d882761b..4925290910 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -2556,6 +2556,44 @@ the phenotype as it models the data.") generated using the PacBio Iso-Seq protocol.") (license license:bsd-3)))) +(define-public pyicoteo + (package + (name "pyicoteo") + (version "2.0.7") + (source + (origin + (method url-fetch) + (uri (string-append "https://bitbucket.org/regulatorygenomicsupf/" + "pyicoteo/get/v" version ".tar.bz2")) + (file-name (string-append name "-" version ".tar.bz2")) + (sha256 + (base32 + "0d6087f29xp8wxwlj111c3sylli98n0l8ry58c51ixzq0zfm50wa")))) + (build-system python-build-system) + (arguments + `(#:python ,python-2 ; does not work with Python 3 + #:tests? #f)) ; there are no tests + (inputs + `(("python2-matplotlib" ,python2-matplotlib))) + (home-page "https://bitbucket.org/regulatorygenomicsupf/pyicoteo") + (synopsis "Analyze high-throughput genetic sequencing data") + (description + "Pyicoteo is a suite of tools for the analysis of high-throughput genetic +sequencing data. It works with genomic coordinates. There are currently six +different command-line tools: + +@enumerate +@item pyicoregion: for generating exploratory regions automatically; +@item pyicoenrich: for differential enrichment between two conditions; +@item pyicoclip: for calling CLIP-Seq peaks without a control; +@item pyicos: for genomic coordinates manipulation; +@item pyicoller: for peak calling on punctuated ChIP-Seq; +@item pyicount: to count how many reads from N experiment files overlap in a + region file; +@item pyicotrocol: to combine operations from pyicoteo. +@end enumerate\n") + (license license:gpl3+))) + (define-public prodigal (package (name "prodigal") |