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| author | Roel Janssen <roel@gnu.org> | 2017-01-30 12:11:04 +0100 |
|---|---|---|
| committer | Roel Janssen <roel@gnu.org> | 2017-01-30 12:11:04 +0100 |
| commit | aa3eeeb5420524a2ba23b8484534cefe5ab181a9 (patch) | |
| tree | ed2e196d4a7bd281135290af1dc78ce32c1fecc1 | |
| parent | 01be4f939e09fb39de18d477bb48e87004de7439 (diff) | |
| download | patches-aa3eeeb5420524a2ba23b8484534cefe5ab181a9.tar patches-aa3eeeb5420524a2ba23b8484534cefe5ab181a9.tar.gz | |
gnu: Add r-bsgenome-hsapiens-1000genomes-hs37d5.
* gnu/packages/bioinformatics.scm (r-bsgenome-hsapiens-1000genomes-hs37d5):
New variable.
| -rw-r--r-- | gnu/packages/bioinformatics.scm | 31 |
1 files changed, 31 insertions, 0 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 3bf352193c..c605c58ea6 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -6885,6 +6885,37 @@ dependencies between GO terms can be implemented and applied.") genome data packages and support for efficient SNP representation.") (license license:artistic2.0))) +(define-public r-bsgenome-hsapiens-1000genomes-hs37d5 + (package + (name "r-bsgenome-hsapiens-1000genomes-hs37d5") + (version "0.99.1") + (source (origin + (method url-fetch) + ;; We cannot use bioconductor-uri here because this tarball is + ;; located under "data/annotation/" instead of "bioc/". + (uri (string-append "http://www.bioconductor.org/packages/" + "release/data/annotation/src/contrib/" + "BSgenome.Hsapiens.1000genomes.hs37d5_" + version ".tar.gz")) + (sha256 + (base32 + "1cg0g5fqmsvwyw2p9hp2yy4ilk21jkbbrnpgqvb5c36ihjwvc7sr")))) + (properties + `((upstream-name . "BSgenome.Hsapiens.1000genomes.hs37d5"))) + (build-system r-build-system) + ;; As this package provides little more than a very large data file it + ;; doesn't make sense to build substitutes. + (arguments `(#:substitutable? #f)) + (propagated-inputs + `(("r-bsgenome" ,r-bsgenome))) + (home-page + "http://www.bioconductor.org/packages/BSgenome.Hsapiens.1000genomes.hs37d5/") + (synopsis "Full genome sequences for Homo sapiens") + (description + "This package provides full genome sequences for Homo sapiens from +1000genomes phase2 reference genome sequence (hs37d5), based on NCBI GRCh37.") + (license license:artistic2.0))) + (define-public r-impute (package (name "r-impute") |