summaryrefslogtreecommitdiff
diff options
context:
space:
mode:
authorRicardo Wurmus <rekado@elephly.net>2019-03-06 21:05:43 +0100
committerRicardo Wurmus <rekado@elephly.net>2019-03-06 21:07:49 +0100
commit3d13b448e5e5a4eff7a94ca38ee051206daab96d (patch)
tree2581243fcc232473aeecc0e390250812ec56a02e
parent6aa896d82e60a2e45b644b2d485dc5fc6b901c0c (diff)
downloadpatches-3d13b448e5e5a4eff7a94ca38ee051206daab96d.tar
patches-3d13b448e5e5a4eff7a94ca38ee051206daab96d.tar.gz
gnu: r-copynumber: Move to (gnu packages bioconductor).
* gnu/packages/bioinformatics.scm (r-copynumber): Move from here... * gnu/packages/bioconductor.scm (r-copynumber): ...to here.
-rw-r--r--gnu/packages/bioconductor.scm23
-rw-r--r--gnu/packages/bioinformatics.scm23
2 files changed, 23 insertions, 23 deletions
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 49765096d9..bbfe68c5cc 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -1204,6 +1204,29 @@ Viewer (SAV) files, access data, and generate QC plots.")
sequencing data.")
(license license:gpl2+)))
+(define-public r-copynumber
+ (package
+ (name "r-copynumber")
+ (version "1.22.0")
+ (source (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "copynumber" version))
+ (sha256
+ (base32
+ "0ipwj9i5p1bwhg5d80jdjagm02krpj2v0j47qdgw41h8wncdyal3"))))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-s4vectors" ,r-s4vectors)
+ ("r-iranges" ,r-iranges)
+ ("r-genomicranges" ,r-genomicranges)
+ ("r-biocgenerics" ,r-biocgenerics)))
+ (home-page "https://bioconductor.org/packages/copynumber")
+ (synopsis "Segmentation of single- and multi-track copy number data")
+ (description
+ "This package segments single- and multi-track copy number data by a
+penalized least squares regression method.")
+ (license license:artistic2.0)))
+
(define-public r-dnacopy
(package
(name "r-dnacopy")
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 4481235c78..09d3bf2090 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -6347,29 +6347,6 @@ between two different types of motif instances using as much relevant
information as possible.")
(license (list license:gpl2+ license:gpl3+))))
-(define-public r-copynumber
- (package
- (name "r-copynumber")
- (version "1.22.0")
- (source (origin
- (method url-fetch)
- (uri (bioconductor-uri "copynumber" version))
- (sha256
- (base32
- "0ipwj9i5p1bwhg5d80jdjagm02krpj2v0j47qdgw41h8wncdyal3"))))
- (build-system r-build-system)
- (propagated-inputs
- `(("r-s4vectors" ,r-s4vectors)
- ("r-iranges" ,r-iranges)
- ("r-genomicranges" ,r-genomicranges)
- ("r-biocgenerics" ,r-biocgenerics)))
- (home-page "https://bioconductor.org/packages/copynumber")
- (synopsis "Segmentation of single- and multi-track copy number data")
- (description
- "This package segments single- and multi-track copy number data by a
-penalized least squares regression method.")
- (license license:artistic2.0)))
-
(define-public r-geneplotter
(package
(name "r-geneplotter")