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| author | Ricardo Wurmus <rekado@elephly.net> | 2016-09-28 22:28:51 +0200 |
|---|---|---|
| committer | Ricardo Wurmus <rekado@elephly.net> | 2016-09-28 22:30:41 +0200 |
| commit | 2320e76b8263eed4e753a7ae31c8b91b826ce2dc (patch) | |
| tree | 5cafc9839e13354a5e27baee86aacb58fda633be | |
| parent | 37042a0fb443199007daec20ad1a39decc7619e0 (diff) | |
| download | patches-2320e76b8263eed4e753a7ae31c8b91b826ce2dc.tar patches-2320e76b8263eed4e753a7ae31c8b91b826ce2dc.tar.gz | |
gnu: sra-tools: Fix build on i686.
* gnu/packages/bioinformatics.scm (sra-tools)[arguments]: Pass
"VDB_LIBDIR" in make-flags; dynamically link libmagic.
| -rw-r--r-- | gnu/packages/bioinformatics.scm | 12 |
1 files changed, 12 insertions, 0 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index ea76f8d00f..3cf1ffcd1f 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -4580,6 +4580,14 @@ sequence itself can be retrieved from these databases.") (arguments `(#:parallel-build? #f ; not supported #:tests? #f ; no "check" target + #:make-flags + (list (string-append "VDB_LIBDIR=" + (assoc-ref %build-inputs "ncbi-vdb") + ,(if (string-prefix? "x86_64" + (or (%current-target-system) + (%current-system))) + "/lib64" + "/lib32"))) #:phases (alist-replace 'configure @@ -4598,6 +4606,10 @@ sequence itself can be retrieved from these databases.") (("my \\$ilibdir = File::Spec->catdir\\(\\$builddir, 'ilib'\\);") "my $ilibdir = File::Spec->catdir($dir, 'ilib');")) + ;; Dynamic linking + (substitute* "tools/copycat/Makefile" + (("smagic-static") "lmagic")) + ;; The 'configure' script doesn't recognize things like ;; '--enable-fast-install'. (zero? (system* |