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| author | Ricardo Wurmus <rekado@elephly.net> | 2019-03-13 13:17:11 +0100 |
|---|---|---|
| committer | Ricardo Wurmus <rekado@elephly.net> | 2019-03-13 13:17:52 +0100 |
| commit | 0fbaf1956b090d63cb21aa45dd213ea81ac34d00 (patch) | |
| tree | 5d2f6f2e2085b8407eb55d5b6113deba8a9aeb85 | |
| parent | 34a24f95ece7be7e5174513091ecd3c4974ce631 (diff) | |
| download | patches-0fbaf1956b090d63cb21aa45dd213ea81ac34d00.tar patches-0fbaf1956b090d63cb21aa45dd213ea81ac34d00.tar.gz | |
gnu: Add r-minfi.
* gnu/packages/bioconductor.scm (r-minfi): New variable.
| -rw-r--r-- | gnu/packages/bioconductor.scm | 49 |
1 files changed, 49 insertions, 0 deletions
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index 34f5ceb5aa..79eab6b67d 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -2234,3 +2234,52 @@ Bayes Analyses of Microarrays} (EBAM).") to identify differentially methylated regions in epigenetic epidemiology studies.") (license license:artistic2.0))) + +(define-public r-minfi + (package + (name "r-minfi") + (version "1.28.4") + (source + (origin + (method url-fetch) + (uri (bioconductor-uri "minfi" version)) + (sha256 + (base32 + "1sjwwqb0syngvj75saaky9y06hbxsawhhcmfvavzkhicxipafv7r")))) + (build-system r-build-system) + (propagated-inputs + `(("r-beanplot" ,r-beanplot) + ("r-biobase" ,r-biobase) + ("r-biocgenerics" ,r-biocgenerics) + ("r-biocparallel" ,r-biocparallel) + ("r-biostrings" ,r-biostrings) + ("r-bumphunter" ,r-bumphunter) + ("r-data-table" ,r-data-table) + ("r-delayedarray" ,r-delayedarray) + ("r-delayedmatrixstats" ,r-delayedmatrixstats) + ("r-genefilter" ,r-genefilter) + ("r-genomeinfodb" ,r-genomeinfodb) + ("r-genomicranges" ,r-genomicranges) + ("r-geoquery" ,r-geoquery) + ("r-hdf5array" ,r-hdf5array) + ("r-illuminaio" ,r-illuminaio) + ("r-iranges" ,r-iranges) + ("r-lattice" ,r-lattice) + ("r-limma" ,r-limma) + ("r-mass" ,r-mass) + ("r-mclust" ,r-mclust) + ("r-nlme" ,r-nlme) + ("r-nor1mix" ,r-nor1mix) + ("r-preprocesscore" ,r-preprocesscore) + ("r-quadprog" ,r-quadprog) + ("r-rcolorbrewer" ,r-rcolorbrewer) + ("r-reshape" ,r-reshape) + ("r-s4vectors" ,r-s4vectors) + ("r-siggenes" ,r-siggenes) + ("r-summarizedexperiment" ,r-summarizedexperiment))) + (home-page "https://github.com/hansenlab/minfi") + (synopsis "Analyze Illumina Infinium DNA methylation arrays") + (description + "This package provides tools to analyze and visualize Illumina Infinium +methylation arrays.") + (license license:artistic2.0))) |