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| author | Ricardo Wurmus <ricardo.wurmus@mdc-berlin.de> | 2015-06-16 11:33:26 +0200 |
|---|---|---|
| committer | Ricardo Wurmus <ricardo.wurmus@mdc-berlin.de> | 2015-06-23 10:55:52 +0200 |
| commit | c4325f626944b0ee45e670c4e2550f77a303ca16 (patch) | |
| tree | 41e1ced8d20c7c58e7af2f97dab26c13246610bd | |
| parent | f3457e7001c44b4455d80c6d44ec92a761c87d6c (diff) | |
| download | patches-c4325f626944b0ee45e670c4e2550f77a303ca16.tar patches-c4325f626944b0ee45e670c4e2550f77a303ca16.tar.gz | |
gnu: Add idr.
* gnu/packages/bioinformatics.scm (idr): New variable.
| -rw-r--r-- | gnu/packages/bioinformatics.scm | 50 |
1 files changed, 50 insertions, 0 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 8dfaff3e00..00bf6915bc 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -1136,6 +1136,56 @@ data. It also provides the bgzip, htsfile, and tabix utilities.") ;; the rest is released under the Expat license (license (list license:expat license:bsd-3)))) +(define-public idr + (package + (name "idr") + (version "2.0.0") + (source (origin + (method url-fetch) + (uri (string-append + "https://github.com/nboley/idr/archive/" + version ".tar.gz")) + (file-name (string-append name "-" version ".tar.gz")) + (sha256 + (base32 + "1k3x44biak00aiv3hpm1yd6nn4hhp7n0qnbs3zh2q9sw7qr1qj5r")))) + (build-system python-build-system) + (arguments + `(#:phases + (modify-phases %standard-phases + (add-after + 'install 'wrap-program + (lambda* (#:key inputs outputs #:allow-other-keys) + (let* ((out (assoc-ref outputs "out")) + (python-version (string-take (string-take-right + (assoc-ref inputs "python") 5) 3)) + (path (string-join + (map (lambda (name) + (string-append (assoc-ref inputs name) + "/lib/python" python-version + "/site-packages")) + '("python-scipy" + "python-numpy" + "python-matplotlib")) + ":"))) + (wrap-program (string-append out "/bin/idr") + `("PYTHONPATH" ":" prefix (,path)))) + #t))))) + (inputs + `(("python-scipy" ,python-scipy) + ("python-numpy" ,python-numpy) + ("python-matplotlib" ,python-matplotlib))) + (native-inputs + `(("python-cython" ,python-cython) + ("python-setuptools" ,python-setuptools))) + (home-page "https://github.com/nboley/idr") + (synopsis "Tool to measure the irreproducible discovery rate (IDR)") + (description + "The IDR (Irreproducible Discovery Rate) framework is a unified approach +to measure the reproducibility of findings identified from replicate +experiments and provide highly stable thresholds based on reproducibility.") + (license license:gpl3+))) + (define-public macs (package (name "macs") |