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| author | Ricardo Wurmus <rekado@elephly.net> | 2019-03-26 16:40:18 +0100 |
|---|---|---|
| committer | Ricardo Wurmus <rekado@elephly.net> | 2019-03-26 16:40:42 +0100 |
| commit | fdc316f3741e2f4174235e1828d62552da7559d4 (patch) | |
| tree | 23c6c480be36ffbbf4e624ab2cfe443b10e2d5de | |
| parent | 9ac17c62421ba6239ca2654fb5c4170e8cb4749e (diff) | |
| download | patches-fdc316f3741e2f4174235e1828d62552da7559d4.tar patches-fdc316f3741e2f4174235e1828d62552da7559d4.tar.gz | |
gnu: trim-galore: Update to 0.6.1.
* gnu/packages/bioinformatics.scm (trim-galore): Update to 0.6.1.
[arguments]: Adjust patching.
| -rw-r--r-- | gnu/packages/bioinformatics.scm | 12 |
1 files changed, 6 insertions, 6 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 87f15fc7f2..4e799f2fc4 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -10880,17 +10880,17 @@ with narrow binding events such as transcription factor ChIP-seq.") (define-public trim-galore (package (name "trim-galore") - (version "0.4.5") + (version "0.6.1") (source (origin (method git-fetch) (uri (git-reference (url "https://github.com/FelixKrueger/TrimGalore.git") (commit version))) - (file-name (string-append name "-" version "-checkout")) + (file-name (git-file-name name version)) (sha256 (base32 - "0x5892l48c816pf00wmnz5vq0zq6170d3xc8zrxncd4jcz7h1p71")))) + "1y31wbxwkm9xqzr5zv1pk5q418whnmlmgmfyxxpnl12h83m2i9iv")))) (build-system gnu-build-system) (arguments `(#:tests? #f ; no tests @@ -10905,10 +10905,10 @@ with narrow binding events such as transcription factor ChIP-seq.") (string-append "$path_to_cutadapt = '" (assoc-ref inputs "cutadapt") "/bin/cutadapt'")) - (("\\| gzip") - (string-append "| " + (("\\$compression_path = \"gzip\"") + (string-append "$compression_path = \"" (assoc-ref inputs "gzip") - "/bin/gzip")) + "/bin/gzip\"")) (("\"gunzip") (string-append "\"" (assoc-ref inputs "gzip") |