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| author | Ricardo Wurmus <ricardo.wurmus@mdc-berlin.de> | 2015-12-18 14:07:32 +0100 |
|---|---|---|
| committer | Ricardo Wurmus <ricardo.wurmus@mdc-berlin.de> | 2016-01-07 17:18:16 +0100 |
| commit | bf159353376abe5177f336cbea56c94b72c89de8 (patch) | |
| tree | c469093b97a2c334386de6726e952022db9b565e | |
| parent | e91d362e48b148b8537e852210a673d9b9058bdf (diff) | |
| download | patches-bf159353376abe5177f336cbea56c94b72c89de8.tar patches-bf159353376abe5177f336cbea56c94b72c89de8.tar.gz | |
gnu: Add Biostrings.
* gnu/packages/bioinformatics.scm (r-biostrings): New variable.
| -rw-r--r-- | gnu/packages/bioinformatics.scm | 26 |
1 files changed, 26 insertions, 0 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 8163d5cc54..d379c4fe37 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -3569,6 +3569,32 @@ functions for parallel evaluation, tailored to use with Bioconductor objects.") (license (list license:gpl2+ license:gpl3+)))) +(define-public r-biostrings + (package + (name "r-biostrings") + (version "2.38.2") + (source (origin + (method url-fetch) + (uri (bioconductor-uri "Biostrings" version)) + (sha256 + (base32 + "1afp9szc8ci6jn0m3hrrqh6df65cpw3v1dcnl6xir3d3m3lwwmk4")))) + (properties + `((upstream-name . "Biostrings"))) + (build-system r-build-system) + (propagated-inputs + `(("r-biocgenerics" ,r-biocgenerics) + ("r-iranges" ,r-iranges) + ("r-s4vectors" ,r-s4vectors) + ("r-xvector" ,r-xvector))) + (home-page "http://bioconductor.org/packages/Biostrings") + (synopsis "String objects and algorithms for biological sequences") + (description + "This package provides memory efficient string containers, string +matching algorithms, and other utilities, for fast manipulation of large +biological sequences or sets of sequences.") + (license license:artistic2.0))) + (define-public r-qtl (package (name "r-qtl") |