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| author | Ricardo Wurmus <rekado@elephly.net> | 2019-03-27 15:24:14 +0100 |
|---|---|---|
| committer | Ricardo Wurmus <rekado@elephly.net> | 2019-03-27 16:17:19 +0100 |
| commit | af26c7ae7010d72c8f4759f3f4e2421cd9a2183b (patch) | |
| tree | bdd463a979193e20982ab966f58d5ffdc9e7472e | |
| parent | 0d50d0df0866430814d3b55cb305c352e796cd55 (diff) | |
| download | patches-af26c7ae7010d72c8f4759f3f4e2421cd9a2183b.tar patches-af26c7ae7010d72c8f4759f3f4e2421cd9a2183b.tar.gz | |
gnu: Add r-fgsea.
* gnu/packages/bioconductor.scm (r-fgsea): New variable.
| -rw-r--r-- | gnu/packages/bioconductor.scm | 29 |
1 files changed, 29 insertions, 0 deletions
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index 59ca93dde8..3f5e61f6f5 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -2724,3 +2724,32 @@ and NE_k statistics in a statistical framework for determining whether a specified group of genes for a pathway has a coordinated association with a phenotype of interest.") (license license:gpl2))) + +(define-public r-fgsea + (package + (name "r-fgsea") + (version "1.8.0") + (source + (origin + (method url-fetch) + (uri (bioconductor-uri "fgsea" version)) + (sha256 + (base32 + "0cxxvlmg340l5l5fz4abbwppiri0ibg4navvq5k3wg511mz8ma2q")))) + (build-system r-build-system) + (propagated-inputs + `(("r-biocparallel" ,r-biocparallel) + ("r-data-table" ,r-data-table) + ("r-fastmatch" ,r-fastmatch) + ("r-ggplot2" ,r-ggplot2) + ("r-gridextra" ,r-gridextra) + ("r-matrix" ,r-matrix) + ("r-rcpp" ,r-rcpp))) + (home-page "https://github.com/ctlab/fgsea/") + (synopsis "Fast gene set enrichment analysis") + (description + "The package implements an algorithm for fast gene set enrichment +analysis. Using the fast algorithm allows to make more permutations and get +more fine grained p-values, which allows to use accurate stantard approaches +to multiple hypothesis correction.") + (license license:expat))) |