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| author | Ben Woodcroft <donttrustben@gmail.com> | 2016-07-12 15:58:31 +1000 |
|---|---|---|
| committer | Ben Woodcroft <donttrustben@gmail.com> | 2016-08-08 22:08:17 +1000 |
| commit | 985d8411446dce13e55f7543de6672150a73eabd (patch) | |
| tree | a93d84a14c853d30ff5367ca017437edfa41f5d8 | |
| parent | 791c11d6a0214afd03ead2aab25a8852f4305405 (diff) | |
| download | patches-985d8411446dce13e55f7543de6672150a73eabd.tar patches-985d8411446dce13e55f7543de6672150a73eabd.tar.gz | |
gnu: Add bpp-core.
* gnu/packages/bioinformatics.scm (bpp-core): New variable.
| -rw-r--r-- | gnu/packages/bioinformatics.scm | 33 |
1 files changed, 33 insertions, 0 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 80721b8797..8b86e52ece 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -522,6 +522,39 @@ into separate processes; and more.") (inputs `(("python2-numpy" ,python2-numpy))))) +(define-public bpp-core + ;; The last release was in 2014 and the recommended way to install from source + ;; is to clone the git repository, so we do this. + ;; http://biopp.univ-montp2.fr/wiki/index.php/Main_Page + (let ((commit "7d8bced0d1a87291ea8dd7046b7fb5ff9c35c582")) + (package + (name "bpp-core") + (version (string-append "2.2.0-1." (string-take commit 7))) + (source (origin + (method git-fetch) + (uri (git-reference + (url "http://biopp.univ-montp2.fr/git/bpp-core") + (commit commit))) + (file-name (string-append name "-" version "-checkout")) + (sha256 + (base32 + "10djsq5vlnkilv436gnmh4irpk49v29pa69r6xiryg32xmvn909j")))) + (build-system cmake-build-system) + (arguments + `(#:parallel-build? #f)) + (inputs + `(("gcc" ,gcc-5))) ; Compilation of bpp-phyl fails with GCC 4.9 so we + ; compile all of the bpp packages with GCC 5. + (home-page "http://biopp.univ-montp2.fr") + (synopsis "C++ libraries for Bioinformatics") + (description + "Bio++ is a set of C++ libraries for Bioinformatics, including sequence +analysis, phylogenetics, molecular evolution and population genetics. It is +Object Oriented and is designed to be both easy to use and computer efficient. +Bio++ intends to help programmers to write computer expensive programs, by +providing them a set of re-usable tools.") + (license license:cecill-c)))) + (define-public blast+ (package (name "blast+") |