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| author | Efraim Flashner <efraim@flashner.co.il> | 2020-01-08 11:30:36 +0200 |
|---|---|---|
| committer | Efraim Flashner <efraim@flashner.co.il> | 2020-01-09 14:30:37 +0200 |
| commit | 612d6a8e5b65774cbebf5b26515ffa9fbba57507 (patch) | |
| tree | e525e4fdb65ae592f0eb293abbb771bca8313f04 | |
| parent | 2673620f2455d89e3b2641d8c479ca00dbad824c (diff) | |
| download | patches-612d6a8e5b65774cbebf5b26515ffa9fbba57507.tar patches-612d6a8e5b65774cbebf5b26515ffa9fbba57507.tar.gz | |
gnu: tabixpp: Update to 1.1.0.
* gnu/packages/bioinformatics.scm (tabixpp): Update to 1.1.0.
[source]: Add snippet to remove vendored library.
[arguments]: Adjust custom 'build phase to fix INCLUDES.
| -rw-r--r-- | gnu/packages/bioinformatics.scm | 9 |
1 files changed, 7 insertions, 2 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 28c5dd11cf..f801639472 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -14869,7 +14869,7 @@ mutations from scRNA-Seq data.") (define-public tabixpp (package (name "tabixpp") - (version "1.0.0") + (version "1.1.0") (source (origin (method git-fetch) (uri (git-reference @@ -14877,7 +14877,11 @@ mutations from scRNA-Seq data.") (commit (string-append "v" version)))) (file-name (git-file-name name version)) (sha256 - (base32 "08vx6nsipk971cyr8z53rnzwkvlld63kcn1fw0pwddynz91xfny8")))) + (base32 "1k2a3vbq96ic4lw72iwp5s3mwwc4xhdffjj584yn6l9637q9j1yd")) + (modules '((guix build utils))) + (snippet + `(begin + (delete-file-recursively "htslib") #t)))) (build-system gnu-build-system) (inputs `(("htslib" ,htslib) @@ -14893,6 +14897,7 @@ mutations from scRNA-Seq data.") (let ((htslib-ref (assoc-ref inputs "htslib"))) (invoke "make" (string-append "HTS_LIB=" htslib-ref "/lib/libhts.a") + (string-append "INCLUDES= -I" htslib-ref "/include/htslib") "HTS_HEADERS=" ; No need to check for headers here. (string-append "LIBPATH=-L. -L" htslib-ref "/include"))))) (replace 'install |