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| author | Ricardo Wurmus <rekado@elephly.net> | 2019-05-10 13:16:09 +0200 |
|---|---|---|
| committer | Ricardo Wurmus <rekado@elephly.net> | 2019-05-10 13:31:03 +0200 |
| commit | 5e0241db84afdabaa455634924a48528ed8ebbe3 (patch) | |
| tree | ae95e39814914912241cb4a6016a4041fb16e96d | |
| parent | 5865606459d018758be55f31f8fa4b1f849fa74e (diff) | |
| download | patches-5e0241db84afdabaa455634924a48528ed8ebbe3.tar patches-5e0241db84afdabaa455634924a48528ed8ebbe3.tar.gz | |
gnu: Add r-quasr.
* gnu/packages/bioconductor.scm (r-quasr): New variable.
| -rw-r--r-- | gnu/packages/bioconductor.scm | 45 |
1 files changed, 45 insertions, 0 deletions
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index e534b33555..62fd1132da 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -4462,3 +4462,48 @@ aligner by Kim et al. (2015). The package contains wrapper functions to create a genome index and to perform the read alignment to the generated index.") (license license:gpl3))) + +(define-public r-quasr + (package + (name "r-quasr") + (version "1.24.1") + (source + (origin + (method url-fetch) + (uri (bioconductor-uri "QuasR" version)) + (sha256 + (base32 + "02mdg3mq99gsqq181j3sfh9pid5l7dqjl68rk4fpc1rvm128y743")))) + (properties `((upstream-name . "QuasR"))) + (build-system r-build-system) + (inputs + `(("zlib" ,zlib))) + (propagated-inputs + `(("r-annotationdbi" ,r-annotationdbi) + ("r-biobase" ,r-biobase) + ("r-biocgenerics" ,r-biocgenerics) + ("r-biocmanager" ,r-biocmanager) + ("r-biocparallel" ,r-biocparallel) + ("r-biostrings" ,r-biostrings) + ("r-bsgenome" ,r-bsgenome) + ("r-genomeinfodb" ,r-genomeinfodb) + ("r-genomicalignments" ,r-genomicalignments) + ("r-genomicfeatures" ,r-genomicfeatures) + ("r-genomicfiles" ,r-genomicfiles) + ("r-genomicranges" ,r-genomicranges) + ("r-iranges" ,r-iranges) + ("r-rbowtie" ,r-rbowtie) + ("r-rhisat2" ,r-rhisat2) + ("r-rhtslib" ,r-rhtslib) + ("r-rsamtools" ,r-rsamtools) + ("r-rtracklayer" ,r-rtracklayer) + ("r-s4vectors" ,r-s4vectors) + ("r-shortread" ,r-shortread))) + (home-page "https://bioconductor.org/packages/QuasR/") + (synopsis "Quantify and annotate short reads in R") + (description + "This package provides a framework for the quantification and analysis of +short genomic reads. It covers a complete workflow starting from raw sequence +reads, over creation of alignments and quality control plots, to the +quantification of genomic regions of interest.") + (license license:gpl2))) |