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| author | Ricardo Wurmus <ricardo.wurmus@mdc-berlin.de> | 2018-09-24 13:23:44 +0200 |
|---|---|---|
| committer | Ricardo Wurmus <rekado@elephly.net> | 2018-09-24 13:31:20 +0200 |
| commit | 28829c040f92399c0705f968f232543e97e5f5f9 (patch) | |
| tree | a9945af45b426066eb4930f05e2411a1e216ab9d | |
| parent | a434730f2ebc39fcda7a8d0709c7f5adffa69299 (diff) | |
| download | patches-28829c040f92399c0705f968f232543e97e5f5f9.tar patches-28829c040f92399c0705f968f232543e97e5f5f9.tar.gz | |
gnu: Add r-cssam.
* gnu/packages/bioinformatics.scm (r-cssam): New variable.
| -rw-r--r-- | gnu/packages/bioinformatics.scm | 31 |
1 files changed, 31 insertions, 0 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index d92fbd7de9..2366843d87 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -13793,3 +13793,34 @@ sequencing data.") common tasks in the analysis of omics data, leveraging and enhancing features provided by Bioconductor packages.") (license license:gpl3+)))) + +(define-public r-cssam + (let ((revision "1") + (commit "9ec58c982fa551af0d80b1a266890d92954833f2")) + (package + (name "r-cssam") + (version (git-version "1.4" revision commit)) + (source (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/shenorrLab/csSAM.git") + (commit commit))) + (file-name (git-file-name name version)) + (sha256 + (base32 + "128syf9v39gk0z3ip000qpsjbg6l1siyq6c8b0hz41dzg5achyb3")))) + (build-system r-build-system) + (propagated-inputs + `(("r-formula" ,r-formula) + ("r-ggplot2" ,r-ggplot2) + ("r-pkgmaker" ,r-pkgmaker) + ("r-plyr" ,r-plyr) + ("r-rngtools" ,r-rngtools) + ("r-scales" ,r-scales))) + (home-page "https://github.com/shenorrLab/csSAM/") + (synopsis "Cell type-specific statistical analysis of microarray") + (description "This package implements the method csSAM that computes +cell-specific differential expression from measured cell proportions using +SAM.") + ;; Any version + (license license:lgpl2.1+)))) |