From a098b3498052e046c8338e0630e0166bcb12355d Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Thu, 5 Mar 2020 21:46:12 +0100 Subject: gnu: python-anndata: Update to 0.7.1. * gnu/packages/python-xyz.scm (python-anndata): Update to 0.7.1. [arguments]: Move check phase after install phase; delete one test. [propagated-inputs]: Add python-importlib-metadata, python-numcodecs, python-packaging, and python-zarr. [native-inputs]: Add python-joblib, python-pytest, and python-setuptools-scm. --- gnu/packages/python-xyz.scm | 27 ++++++++++++++++++++++++--- 1 file changed, 24 insertions(+), 3 deletions(-) (limited to 'gnu') diff --git a/gnu/packages/python-xyz.scm b/gnu/packages/python-xyz.scm index 0505ad5f40..bf82f5934f 100644 --- a/gnu/packages/python-xyz.scm +++ b/gnu/packages/python-xyz.scm @@ -15819,20 +15819,41 @@ (define-public python-zarr (define-public python-anndata (package (name "python-anndata") - (version "0.6.18") + (version "0.7.1") (source (origin (method url-fetch) (uri (pypi-uri "anndata" version)) (sha256 (base32 - "03x83yjaccbqszj7x4fwwmpil0ai59yx64d1zmf2691za3j03w73")))) + "0rnfbpr55j1a1bi2kd4mz444741hrn74kz90h5rnjr59jmpfnh09")))) (build-system python-build-system) + (arguments + `(#:phases + (modify-phases %standard-phases + (add-after 'unpack 'delete-inconvenient-tests + (lambda _ + ;; This test depends on python-scikit-learn. + (delete-file "anndata/tests/test_inplace_subset.py") + #t)) + (delete 'check) + (add-after 'install 'check + (lambda* (#:key inputs outputs #:allow-other-keys) + (add-installed-pythonpath inputs outputs) + (invoke "pytest" "-vv")))))) (propagated-inputs `(("python-h5py" ,python-h5py) + ("python-importlib-metadata" ,python-importlib-metadata) ("python-natsort" ,python-natsort) + ("python-numcodecs" ,python-numcodecs) + ("python-packaging" ,python-packaging) ("python-pandas" ,python-pandas) - ("python-scipy" ,python-scipy))) + ("python-scipy" ,python-scipy) + ("python-zarr" ,python-zarr))) + (native-inputs + `(("python-joblib" ,python-joblib) + ("python-pytest" ,python-pytest) + ("python-setuptools-scm" ,python-setuptools-scm))) (home-page "https://github.com/theislab/anndata") (synopsis "Annotated data for data analysis pipelines") (description "Anndata is a package for simple (functional) high-level APIs -- cgit v1.2.3