From 2fc74f3176f0aae1269ba9eb754f8d9eb7c3a848 Mon Sep 17 00:00:00 2001 From: Roel Janssen Date: Wed, 26 May 2021 23:54:14 +0200 Subject: gnu: Add r-clusterexperiment. * gnu/packages/bioconductor.scm (r-clusterexperiment): New variable. --- gnu/packages/bioconductor.scm | 46 +++++++++++++++++++++++++++++++++++++++++++ 1 file changed, 46 insertions(+) (limited to 'gnu') diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index 39f2a81794..025faadf76 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -5293,6 +5293,52 @@ All the visualization methods are developed based on ggplot2 graphics.") profiles (GO and KEGG) of gene and gene clusters.") (license license:artistic2.0))) +(define-public r-clusterexperiment + (package + (name "r-clusterexperiment") + (version "2.10.1") + (source (origin + (method url-fetch) + (uri (bioconductor-uri "clusterExperiment" version)) + (sha256 + (base32 + "04n3lcm7dh07sjkzyv83m55mx3lz0lkcy8yq9hi0zywqyrhyzz7z")))) + (build-system r-build-system) + (native-inputs + `(("r-knitr" ,r-knitr))) + (propagated-inputs + `(("r-ape" ,r-ape) + ("r-biocgenerics" ,r-biocgenerics) + ("r-cluster" ,r-cluster) + ("r-delayedarray" ,r-delayedarray) + ("r-edger" ,r-edger) + ("r-hdf5array" ,r-hdf5array) + ("r-howmany" ,r-howmany) + ("r-kernlab" ,r-kernlab) + ("r-limma" ,r-limma) + ("r-locfdr" ,r-locfdr) + ("r-matrix" ,r-matrix) + ("r-matrixstats" ,r-matrixstats) + ("r-mbkmeans" ,r-mbkmeans) + ("r-nmf" ,r-nmf) + ("r-phylobase" ,r-phylobase) + ("r-pracma" ,r-pracma) + ("r-rcolorbrewer" ,r-rcolorbrewer) + ("r-rcpp" ,r-rcpp) + ("r-rspectra" ,r-rspectra) + ("r-s4vectors" ,r-s4vectors) + ("r-scales" ,r-scales) + ("r-singlecellexperiment" ,r-singlecellexperiment) + ("r-stringr" ,r-stringr) + ("r-summarizedexperiment" ,r-summarizedexperiment) + ("r-zinbwave" ,r-zinbwave))) + (home-page "https://bioconductor.org/packages/clusterExperiment/") + (synopsis "Compare clusterings for single-cell sequencing") + (description "This package provides functionality for running and comparing +many different clusterings of single-cell sequencing data or other large mRNA +expression data sets.") + (license license:artistic2.0))) + (define-public r-mlinterfaces (package (name "r-mlinterfaces") -- cgit v1.2.3