From 0574446be82ef54b925441e4283bf754a86918a9 Mon Sep 17 00:00:00 2001 From: Roel Janssen Date: Wed, 9 Sep 2020 17:02:55 +0200 Subject: gnu: Add r-bisquerna. * gnu/packages/bioinformatics.scm (r-bisquerna): New variable. --- gnu/packages/bioinformatics.scm | 25 +++++++++++++++++++++++++ 1 file changed, 25 insertions(+) (limited to 'gnu') diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index f8792ef4d4..9f2fd86de2 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -7923,6 +7923,31 @@ manipulating genomic intervals and variables defined along a genome.") on Bioconductor or which replace R functions.") (license license:artistic2.0))) +(define-public r-bisquerna + (package + (name "r-bisquerna") + (version "1.0.4") + (source (origin + (method url-fetch) + (uri (cran-uri "BisqueRNA" version)) + (sha256 + (base32 + "01g34n87ml7n3pck77497ddgbv3rr5p4153ac8ninpgjijlm3jw2")))) + (properties `((upstream-name . "BisqueRNA"))) + (build-system r-build-system) + (propagated-inputs + `(("r-biobase" ,r-biobase) + ("r-limsolve" ,r-limsolve))) + (home-page "https://www.biorxiv.org/content/10.1101/669911v1") + (synopsis "Decomposition of Bulk Expression with Single-Cell Sequencing") + (description "This package provides tools to accurately estimate cell type +abundances from heterogeneous bulk expression. A reference-based method +utilizes single-cell information to generate a signature matrix and +transformation of bulk expression for accurate regression based estimates. +A marker-based method utilizes known cell-specific marker genes to measure +relative abundances across samples.") + (license license:gpl3))) + (define-public r-annotationdbi (package (name "r-annotationdbi") -- cgit v1.2.3