From 3a08940e1a38d1f15630b6ad6678b1a79d70049d Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Wed, 6 Mar 2019 21:35:20 +0100 Subject: gnu: r-org-ce-eg-db: Move to (gnu packages bioconductor). * gnu/packages/bioinformatics.scm (r-org-ce-eg-db): Move from here... * gnu/packages/bioconductor.scm (r-org-ce-eg-db): ...to here. --- gnu/packages/bioconductor.scm | 26 ++++++++++++++++++++++++++ gnu/packages/bioinformatics.scm | 26 -------------------------- 2 files changed, 26 insertions(+), 26 deletions(-) (limited to 'gnu/packages') diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index a4e436e61d..a55439b94e 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -360,6 +360,32 @@ (define-public r-bsgenome-mmusculus-ucsc-mm10 in Biostrings objects.") (license license:artistic2.0))) +(define-public r-org-ce-eg-db + (package + (name "r-org-ce-eg-db") + (version "3.7.0") + (source (origin + (method url-fetch) + ;; We cannot use bioconductor-uri here because this tarball is + ;; located under "data/annotation/" instead of "bioc/". + (uri (string-append "https://www.bioconductor.org/packages/" + "release/data/annotation/src/contrib/" + "org.Ce.eg.db_" version ".tar.gz")) + (sha256 + (base32 + "1w5br1ss4ha8wv4v2saj7cmbjc2jw0dyj2f2y269l078z31wcnaz")))) + (properties + `((upstream-name . "org.Ce.eg.db"))) + (build-system r-build-system) + (propagated-inputs + `(("r-annotationdbi" ,r-annotationdbi))) + (home-page "https://www.bioconductor.org/packages/org.Ce.eg.db/") + (synopsis "Genome wide annotation for Worm") + (description + "This package provides mappings from Entrez gene identifiers to various +annotations for the genome of the model worm Caenorhabditis elegans.") + (license license:artistic2.0))) + (define-public r-org-dr-eg-db (package (name "r-org-dr-eg-db") diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index b9973ba81f..9285d1889d 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -8006,32 +8006,6 @@ (define-public r-org-hs-eg-db on mapping using Entrez Gene identifiers.") (license license:artistic2.0))) -(define-public r-org-ce-eg-db - (package - (name "r-org-ce-eg-db") - (version "3.7.0") - (source (origin - (method url-fetch) - ;; We cannot use bioconductor-uri here because this tarball is - ;; located under "data/annotation/" instead of "bioc/". - (uri (string-append "https://www.bioconductor.org/packages/" - "release/data/annotation/src/contrib/" - "org.Ce.eg.db_" version ".tar.gz")) - (sha256 - (base32 - "1w5br1ss4ha8wv4v2saj7cmbjc2jw0dyj2f2y269l078z31wcnaz")))) - (properties - `((upstream-name . "org.Ce.eg.db"))) - (build-system r-build-system) - (propagated-inputs - `(("r-annotationdbi" ,r-annotationdbi))) - (home-page "https://www.bioconductor.org/packages/org.Ce.eg.db/") - (synopsis "Genome wide annotation for Worm") - (description - "This package provides mappings from Entrez gene identifiers to various -annotations for the genome of the model worm Caenorhabditis elegans.") - (license license:artistic2.0))) - (define-public r-org-dm-eg-db (package (name "r-org-dm-eg-db") -- cgit v1.2.3