From a9a9c632afec38d7ea8921cf60d3598b88b21f2b Mon Sep 17 00:00:00 2001
From: Nicolas Goaziou <mail@nicolasgoaziou.fr>
Date: Sat, 6 Mar 2021 16:12:15 +0100
Subject: gnu: r-xml: Fix home-page URI.

* gnu/packages/statistics.scm (r-xml)[home-page]: Fix URI.
---
 gnu/packages/statistics.scm | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

(limited to 'gnu/packages/statistics.scm')

diff --git a/gnu/packages/statistics.scm b/gnu/packages/statistics.scm
index c5cb7c0961..daea57e290 100644
--- a/gnu/packages/statistics.scm
+++ b/gnu/packages/statistics.scm
@@ -2930,7 +2930,7 @@ ldap, and also supports cookies, redirects, authentication, etc.")
        ("zlib" ,zlib)))
     (native-inputs
      `(("pkg-config" ,pkg-config)))
-    (home-page "http://www.omegahat.org/RSXML")
+    (home-page "http://www.omegahat.net/RSXML")
     (synopsis "Tools for parsing and generating XML within R")
     (description
      "Many approaches for both reading and creating XML (and HTML)
-- 
cgit v1.2.3


From df45894df3df575ecee7ea93d467acb3e242f876 Mon Sep 17 00:00:00 2001
From: Nicolas Goaziou <mail@nicolasgoaziou.fr>
Date: Sat, 6 Mar 2021 16:13:28 +0100
Subject: gnu: r-rcurl: Fix home page URI.

* gnu/packages/statistics.scm (r-rcurl)[home-page]: Fix URI.
---
 gnu/packages/statistics.scm | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

(limited to 'gnu/packages/statistics.scm')

diff --git a/gnu/packages/statistics.scm b/gnu/packages/statistics.scm
index daea57e290..ac8b4e959e 100644
--- a/gnu/packages/statistics.scm
+++ b/gnu/packages/statistics.scm
@@ -2899,7 +2899,7 @@ if (certs != \"\") { .opts = merge.list(.opts, list(cainfo=certs)) }
      `(("libcurl" ,curl)))
     (propagated-inputs
      `(("r-bitops" ,r-bitops)))
-    (home-page "http://www.omegahat.org/RCurl")
+    (home-page "http://www.omegahat.net/RCurl")
     (synopsis "General network client interface for R")
     (description
      "The package allows one to compose general HTTP requests and provides
-- 
cgit v1.2.3


From 85b2d41eebd400be2c9a58d065355f3cd0a17773 Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus <rekado@elephly.net>
Date: Tue, 9 Mar 2021 21:41:51 +0100
Subject: gnu: r-boot: Update to 1.3-27.

* gnu/packages/statistics.scm (r-boot): Update to 1.3-27.
---
 gnu/packages/statistics.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

(limited to 'gnu/packages/statistics.scm')

diff --git a/gnu/packages/statistics.scm b/gnu/packages/statistics.scm
index ac8b4e959e..b80e49c7bc 100644
--- a/gnu/packages/statistics.scm
+++ b/gnu/packages/statistics.scm
@@ -416,14 +416,14 @@ available, greatly increasing its breadth and scope.")
 (define-public r-boot
   (package
     (name "r-boot")
-    (version "1.3-26")
+    (version "1.3-27")
     (source
      (origin
        (method url-fetch)
        (uri (cran-uri "boot" version))
        (sha256
         (base32
-         "161l3q3kdmi7s3xwl3xxg3x3zx8787hsvsr2mmawwxq2cad131fl"))))
+         "1v9anpxj4p83kd40gyfy8a454b2jmn11incrzym7wdvh8mdxpcil"))))
     (build-system r-build-system)
     (home-page "https://cran.r-project.org/web/packages/boot")
     (synopsis "Bootstrap functions for R")
-- 
cgit v1.2.3


From 71939b503b1c04195bac9b987f341fe4338964bb Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus <rekado@elephly.net>
Date: Tue, 9 Mar 2021 21:41:54 +0100
Subject: gnu: r-mass: Update to 7.3-53.1.

* gnu/packages/statistics.scm (r-mass): Update to 7.3-53.1.
---
 gnu/packages/statistics.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

(limited to 'gnu/packages/statistics.scm')

diff --git a/gnu/packages/statistics.scm b/gnu/packages/statistics.scm
index b80e49c7bc..e08aefd4c1 100644
--- a/gnu/packages/statistics.scm
+++ b/gnu/packages/statistics.scm
@@ -437,14 +437,14 @@ D.V. Hinkley (1997, CUP), originally written by Angelo Canty for S.")
 (define-public r-mass
   (package
     (name "r-mass")
-    (version "7.3-53")
+    (version "7.3-53.1")
     (source
      (origin
        (method url-fetch)
        (uri (cran-uri "MASS" version))
        (sha256
         (base32
-         "0f2bwsbqr3nzsqxva051lg8wd068naqif3vc48hac0m3mmq4x0j1"))))
+         "0ra46441y4iwcpd8px7j7vcjfj09fawl5khilaivjbg3gswiwnz4"))))
     (properties `((upstream-name . "MASS")))
     (build-system r-build-system)
     (home-page "http://www.stats.ox.ac.uk/pub/MASS4/")
-- 
cgit v1.2.3


From ea2197cbe867bbb3cc9eca3693e0d8ba046d640f Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus <rekado@elephly.net>
Date: Tue, 9 Mar 2021 21:41:57 +0100
Subject: gnu: r-cluster: Update to 2.1.1.

* gnu/packages/statistics.scm (r-cluster): Update to 2.1.1.
---
 gnu/packages/statistics.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

(limited to 'gnu/packages/statistics.scm')

diff --git a/gnu/packages/statistics.scm b/gnu/packages/statistics.scm
index e08aefd4c1..596d751322 100644
--- a/gnu/packages/statistics.scm
+++ b/gnu/packages/statistics.scm
@@ -480,14 +480,14 @@ k-nearest neighbour, Learning Vector Quantization and Self-Organizing Maps.")
 (define-public r-cluster
   (package
     (name "r-cluster")
-    (version "2.1.0")
+    (version "2.1.1")
     (source
      (origin
        (method url-fetch)
        (uri (cran-uri "cluster" version))
        (sha256
         (base32
-         "055af3yz2biqbsbwm4arwr1yqnj4gicpzv2i6dbfl5pnz2z5byga"))))
+         "0qw06n1f7771mszc9y1f1c9zngd82zlf2s2z30p9514vxh4wgf5x"))))
     (build-system r-build-system)
     (native-inputs
      `(("gfortran" ,gfortran)))
-- 
cgit v1.2.3


From ba522c9fa31195f2ae06bb9ccce7a68195c85410 Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus <rekado@elephly.net>
Date: Tue, 9 Mar 2021 21:42:00 +0100
Subject: gnu: r-mgcv: Update to 1.8-34.

* gnu/packages/statistics.scm (r-mgcv): Update to 1.8-34.
---
 gnu/packages/statistics.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

(limited to 'gnu/packages/statistics.scm')

diff --git a/gnu/packages/statistics.scm b/gnu/packages/statistics.scm
index 596d751322..f14a0e8f40 100644
--- a/gnu/packages/statistics.scm
+++ b/gnu/packages/statistics.scm
@@ -629,13 +629,13 @@ nonlinear mixed-effects models.")
 (define-public r-mgcv
   (package
    (name "r-mgcv")
-   (version "1.8-33")
+   (version "1.8-34")
    (source
     (origin
      (method url-fetch)
      (uri (cran-uri "mgcv" version))
      (sha256
-      (base32 "1x1bdzz2b2f05626xygwqp30b4rhblgg76hs15j9ab4fjan7pjwq"))))
+      (base32 "1pkky9xb3wsinqd75gkfbgw270vx8zh52id6bf1xj9njnzrkmc8m"))))
    (build-system r-build-system)
    (propagated-inputs
     `(("r-matrix" ,r-matrix)
-- 
cgit v1.2.3


From 84bd32a964ee9524ff448ab9c082fb59ebb7ea67 Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus <rekado@elephly.net>
Date: Tue, 9 Mar 2021 21:42:06 +0100
Subject: gnu: r-svglite: Update to 2.0.0.

* gnu/packages/statistics.scm (r-svglite): Update to 2.0.0.
[inputs]: Add libpng and zlib.
[propagated-inputs]: Remove r-bh, r-gdtools, and r-rcpp; add r-cpp11 and
r-systemfonts.
---
 gnu/packages/statistics.scm | 12 +++++++-----
 1 file changed, 7 insertions(+), 5 deletions(-)

(limited to 'gnu/packages/statistics.scm')

diff --git a/gnu/packages/statistics.scm b/gnu/packages/statistics.scm
index f14a0e8f40..96a60e198d 100644
--- a/gnu/packages/statistics.scm
+++ b/gnu/packages/statistics.scm
@@ -1202,19 +1202,21 @@ and to generate base64 encoded string from raster matrix.")
 (define-public r-svglite
   (package
     (name "r-svglite")
-    (version "1.2.3.2")
+    (version "2.0.0")
     (source
      (origin
        (method url-fetch)
        (uri (cran-uri "svglite" version))
        (sha256
         (base32
-         "00n8bg4iligl0h24v42cka417w26zmcxrr4r6k8wdal1riwhgmi5"))))
+         "19ggknw5322yw7r1bzhw0bqggcrpn0qxddk7kblpqnra2zz2brkn"))))
     (build-system r-build-system)
+    (inputs
+     `(("libpng" ,libpng)
+       ("zlib" ,zlib)))
     (propagated-inputs
-     `(("r-bh" ,r-bh)
-       ("r-gdtools" ,r-gdtools)
-       ("r-rcpp" ,r-rcpp)))
+     `(("r-cpp11" ,r-cpp11)
+       ("r-systemfonts" ,r-systemfonts)))
     (native-inputs
      `(("r-knitr" ,r-knitr)))
     (home-page "https://github.com/hadley/svglite")
-- 
cgit v1.2.3


From 440dd95f72eaf9405ef37fd73929e7ccb5f6368e Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus <rekado@elephly.net>
Date: Tue, 9 Mar 2021 21:42:09 +0100
Subject: gnu: r-mime: Update to 0.10.

* gnu/packages/statistics.scm (r-mime): Update to 0.10.
---
 gnu/packages/statistics.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

(limited to 'gnu/packages/statistics.scm')

diff --git a/gnu/packages/statistics.scm b/gnu/packages/statistics.scm
index 96a60e198d..5fb55f4a5c 100644
--- a/gnu/packages/statistics.scm
+++ b/gnu/packages/statistics.scm
@@ -1368,13 +1368,13 @@ supported via Andre Simon's highlight package.")
 (define-public r-mime
   (package
     (name "r-mime")
-    (version "0.9")
+    (version "0.10")
     (source (origin
               (method url-fetch)
               (uri (cran-uri "mime" version))
               (sha256
                (base32
-                "107sqarmyhxlch5nrg796i5z03p9mshskisiq2fm628ajk99gkrc"))))
+                "1xz37fizlx4w3g8kbim7vr5slqd6cmaq5sa0s4q7ayl1bahk6ckq"))))
     (build-system r-build-system)
     (home-page "https://github.com/yihui/mime")
     (synopsis "R package to map filenames to MIME types")
-- 
cgit v1.2.3


From 4a27e42fd66db384e47c72d6f24197b297d3cf9d Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus <rekado@elephly.net>
Date: Tue, 9 Mar 2021 21:42:12 +0100
Subject: gnu: r-testthat: Update to 3.0.2.

* gnu/packages/statistics.scm (r-testthat): Update to 3.0.2.
---
 gnu/packages/statistics.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

(limited to 'gnu/packages/statistics.scm')

diff --git a/gnu/packages/statistics.scm b/gnu/packages/statistics.scm
index 5fb55f4a5c..d2a7a68fbf 100644
--- a/gnu/packages/statistics.scm
+++ b/gnu/packages/statistics.scm
@@ -1585,13 +1585,13 @@ R packages that praise their users.")
 (define-public r-testthat
   (package
     (name "r-testthat")
-    (version "3.0.1")
+    (version "3.0.2")
     (source (origin
               (method url-fetch)
               (uri (cran-uri "testthat" version))
               (sha256
                (base32
-                "1l1s4jgmgbsf711ma5i58ssgkz98an7hijcxvwfz314nf5fc8zr9"))))
+                "03sbk36vrjhzfap6a9czxw93r7h06rh3mb01inbrhrh5r2pd00qq"))))
     (build-system r-build-system)
     (propagated-inputs
      `(("r-brio" ,r-brio)
-- 
cgit v1.2.3


From 9846034edc4acce55f22ad9fd49fb2deec4ae621 Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus <rekado@elephly.net>
Date: Tue, 9 Mar 2021 21:42:16 +0100
Subject: gnu: r-tibble: Update to 3.1.0.

* gnu/packages/statistics.scm (r-tibble): Update to 3.1.0.
[propagated-inputs]: Remove r-cli and r-crayon.
---
 gnu/packages/statistics.scm | 8 +++-----
 1 file changed, 3 insertions(+), 5 deletions(-)

(limited to 'gnu/packages/statistics.scm')

diff --git a/gnu/packages/statistics.scm b/gnu/packages/statistics.scm
index d2a7a68fbf..a35842f5d0 100644
--- a/gnu/packages/statistics.scm
+++ b/gnu/packages/statistics.scm
@@ -1665,19 +1665,17 @@ like tidy evaluation.")
 (define-public r-tibble
   (package
     (name "r-tibble")
-    (version "3.0.6")
+    (version "3.1.0")
     (source
      (origin
        (method url-fetch)
        (uri (cran-uri "tibble" version))
        (sha256
         (base32
-         "0f41gnq0wwmy1z96lg3gicvm54jh685f7i3ag8yfk39r3ql2vzpv"))))
+         "0khmypf49la8n5gx72n7gr6dl6r6ja404i578g6sg0ail3g2i7lm"))))
     (build-system r-build-system)
     (propagated-inputs
-     `(("r-cli" ,r-cli)
-       ("r-crayon" ,r-crayon)
-       ("r-ellipsis" ,r-ellipsis)
+     `(("r-ellipsis" ,r-ellipsis)
        ("r-fansi" ,r-fansi)
        ("r-lifecycle" ,r-lifecycle)
        ("r-magrittr" ,r-magrittr)
-- 
cgit v1.2.3


From 47b8a239dc936bd8e51c246dc4532dc96b91a71a Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus <rekado@elephly.net>
Date: Tue, 9 Mar 2021 21:42:19 +0100
Subject: gnu: r-dplyr: Update to 1.0.5.

* gnu/packages/statistics.scm (r-dplyr): Update to 1.0.5.
---
 gnu/packages/statistics.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

(limited to 'gnu/packages/statistics.scm')

diff --git a/gnu/packages/statistics.scm b/gnu/packages/statistics.scm
index a35842f5d0..5eb37f6ad0 100644
--- a/gnu/packages/statistics.scm
+++ b/gnu/packages/statistics.scm
@@ -1695,13 +1695,13 @@ and printing capabilities than traditional data frames.")
 (define-public r-dplyr
   (package
     (name "r-dplyr")
-    (version "1.0.4")
+    (version "1.0.5")
     (source (origin
               (method url-fetch)
               (uri (cran-uri "dplyr" version))
               (sha256
                (base32
-                "0fh9ivw4jgdhcdz2mcs0b869jb479cjzr2c0s2x3552is5qqzxlv"))))
+                "0w3fr6sn0mw5mjs27669czpc8vpjj6ayrjavw8v0gd7ccsfa0hbm"))))
     (build-system r-build-system)
     (propagated-inputs
      `(("r-ellipsis" ,r-ellipsis)
-- 
cgit v1.2.3


From 2dcc88a1532b64df27e1cef9d86f79614803ceb2 Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus <rekado@elephly.net>
Date: Tue, 9 Mar 2021 21:42:22 +0100
Subject: gnu: r-data-table: Update to 1.14.0.

* gnu/packages/statistics.scm (r-data-table): Update to 1.14.0.
---
 gnu/packages/statistics.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

(limited to 'gnu/packages/statistics.scm')

diff --git a/gnu/packages/statistics.scm b/gnu/packages/statistics.scm
index 5eb37f6ad0..5306e42bba 100644
--- a/gnu/packages/statistics.scm
+++ b/gnu/packages/statistics.scm
@@ -1852,13 +1852,13 @@ times.")
 (define-public r-data-table
   (package
     (name "r-data-table")
-    (version "1.13.6")
+    (version "1.14.0")
     (source (origin
               (method url-fetch)
               (uri (cran-uri "data.table" version))
               (sha256
                (base32
-                "16ryrpzl86krww5nx7a97i09y5xqld4lw4d9pa1vzjl99x6ds36m"))))
+                "0kgbvap5v2spnkz3dwfm4jh4qcpvbzdn9s8bzfnhzabz9qjdxw8k"))))
     (build-system r-build-system)
     (inputs
      `(("zlib" ,zlib)))
-- 
cgit v1.2.3


From 658e44abdbd794215e7ddd7789afde2668875af4 Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus <rekado@elephly.net>
Date: Tue, 9 Mar 2021 21:42:26 +0100
Subject: gnu: r-desc: Update to 1.3.0.

* gnu/packages/statistics.scm (r-desc): Update to 1.3.0.
[propagated-inputs]: Remove r-assertthat.
---
 gnu/packages/statistics.scm | 7 +++----
 1 file changed, 3 insertions(+), 4 deletions(-)

(limited to 'gnu/packages/statistics.scm')

diff --git a/gnu/packages/statistics.scm b/gnu/packages/statistics.scm
index 5306e42bba..ed2a4d97ce 100644
--- a/gnu/packages/statistics.scm
+++ b/gnu/packages/statistics.scm
@@ -2267,18 +2267,17 @@ module, Java Server Pages, and Python's psp module.")
 (define-public r-desc
   (package
     (name "r-desc")
-    (version "1.2.0")
+    (version "1.3.0")
     (source
      (origin
        (method url-fetch)
        (uri (cran-uri "desc" version))
        (sha256
         (base32
-         "1s6s13fk6sxwcj8wzkwxl9vr33153xx11p5wi9avqx3rzkabavz6"))))
+         "1sw4vya3l971gpccq4gnjywgbl73bgx8la18l0wy617qv94f905y"))))
     (build-system r-build-system)
     (propagated-inputs
-     `(("r-assertthat" ,r-assertthat)
-       ("r-crayon" ,r-crayon)
+     `(("r-crayon" ,r-crayon)
        ("r-r6" ,r-r6)
        ("r-rprojroot" ,r-rprojroot)))
     (home-page "https://github.com/r-pkgs/desc")
-- 
cgit v1.2.3


From 395ab04137e6911dc87712d1c028b5f6d2b47d8d Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus <rekado@elephly.net>
Date: Tue, 9 Mar 2021 21:42:29 +0100
Subject: gnu: r-rmarkdown: Update to 2.7.

* gnu/packages/statistics.scm (r-rmarkdown): Update to 2.7.
---
 gnu/packages/statistics.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

(limited to 'gnu/packages/statistics.scm')

diff --git a/gnu/packages/statistics.scm b/gnu/packages/statistics.scm
index ed2a4d97ce..737ece625e 100644
--- a/gnu/packages/statistics.scm
+++ b/gnu/packages/statistics.scm
@@ -2725,13 +2725,13 @@ certain criterion, e.g., it contains a certain regular file.")
 (define-public r-rmarkdown
   (package
     (name "r-rmarkdown")
-    (version "2.6")
+    (version "2.7")
     (source
       (origin
         (method url-fetch)
         (uri (cran-uri "rmarkdown" version))
         (sha256
-          (base32 "1c7nrpnv2v43msv7nia90rjh6s5x9m5wlb3mpiwy04fyfb29krz6"))))
+          (base32 "0shj637qhpcf30il3lhl3k5bxi5l3x3gf612hbqlakp1qrgrf8lm"))))
     (properties `((upstream-name . "rmarkdown")))
     (build-system r-build-system)
     (propagated-inputs
-- 
cgit v1.2.3


From 84e98bbc4ff4c64fa68b7dc1f8bf00fb39ddbacb Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus <rekado@elephly.net>
Date: Tue, 9 Mar 2021 21:42:33 +0100
Subject: gnu: r-segmented: Update to 1.3-3.

* gnu/packages/statistics.scm (r-segmented): Update to 1.3-3.
---
 gnu/packages/statistics.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

(limited to 'gnu/packages/statistics.scm')

diff --git a/gnu/packages/statistics.scm b/gnu/packages/statistics.scm
index 737ece625e..934c901edf 100644
--- a/gnu/packages/statistics.scm
+++ b/gnu/packages/statistics.scm
@@ -3037,14 +3037,14 @@ statements.")
 (define-public r-segmented
   (package
     (name "r-segmented")
-    (version "1.3-2")
+    (version "1.3-3")
     (source
      (origin
        (method url-fetch)
        (uri (cran-uri "segmented" version))
        (sha256
         (base32
-         "00fc5lcq5qqmw2c2cimrxw8jmd0jysx2p238c2ycykkb13jdwm5n"))))
+         "16036lp0dq7qqzy8wc4qsgv58zksz6hmgw51v88gl6xclryc670y"))))
     (build-system r-build-system)
     (home-page "https://cran.r-project.org/web/packages/segmented")
     (synopsis "Regression models with breakpoints estimation")
-- 
cgit v1.2.3


From 7901124b5b2ed146cf40ed1835c19e9e41ec1670 Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus <rekado@elephly.net>
Date: Tue, 9 Mar 2021 21:42:36 +0100
Subject: gnu: r-sparsem: Update to 1.81.

* gnu/packages/statistics.scm (r-sparsem): Update to 1.81.
---
 gnu/packages/statistics.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

(limited to 'gnu/packages/statistics.scm')

diff --git a/gnu/packages/statistics.scm b/gnu/packages/statistics.scm
index 934c901edf..30d648f501 100644
--- a/gnu/packages/statistics.scm
+++ b/gnu/packages/statistics.scm
@@ -3078,13 +3078,13 @@ worker processes and collect and return the results on the master.")
 (define-public r-sparsem
   (package
     (name "r-sparsem")
-    (version "1.78")
+    (version "1.81")
     (source (origin
               (method url-fetch)
               (uri (cran-uri "SparseM" version))
               (sha256
                (base32
-                "0cmlm0lps3daalvp5jzjnjfys388hgkyc8yw0g5r2351h749xdyn"))))
+                "0csbqd9wm6r4162mday1iaigzf9wv2rp1zq8hnihys6f38w8z0xx"))))
     (properties
      `((upstream-name . "SparseM")))
     (native-inputs
-- 
cgit v1.2.3


From 4f9f7e7eb2ab48d25158d3afb2bd26cd02a1704f Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus <rekado@elephly.net>
Date: Tue, 9 Mar 2021 21:42:39 +0100
Subject: gnu: r-glmnet: Update to 4.1-1.

* gnu/packages/statistics.scm (r-glmnet): Update to 4.1-1.
---
 gnu/packages/statistics.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

(limited to 'gnu/packages/statistics.scm')

diff --git a/gnu/packages/statistics.scm b/gnu/packages/statistics.scm
index 30d648f501..6aff73b45c 100644
--- a/gnu/packages/statistics.scm
+++ b/gnu/packages/statistics.scm
@@ -3276,13 +3276,13 @@ analysis of large sparse or dense matrices.")
 (define-public r-glmnet
   (package
    (name "r-glmnet")
-   (version "4.1")
+   (version "4.1-1")
    (source
     (origin
      (method url-fetch)
      (uri (cran-uri "glmnet" version))
      (sha256
-      (base32 "1js01qnznm20h4pslaw1ragxhrzk0w4nw7r6ryg7i27l344za2lg"))))
+      (base32 "0zpfq0m1y5zks5p9r28553ykywwrhrb3ds8m6b7sm6hj4n1c4csd"))))
    (build-system r-build-system)
    (native-inputs
     `(("gfortran" ,gfortran)
-- 
cgit v1.2.3


From eddff93fd307bfc91e404abbaf943ebc8f842ff2 Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus <rekado@elephly.net>
Date: Tue, 9 Mar 2021 21:42:42 +0100
Subject: gnu: r-tidyr: Update to 1.1.3.

* gnu/packages/statistics.scm (r-tidyr): Update to 1.1.3.
---
 gnu/packages/statistics.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

(limited to 'gnu/packages/statistics.scm')

diff --git a/gnu/packages/statistics.scm b/gnu/packages/statistics.scm
index 6aff73b45c..39843ed631 100644
--- a/gnu/packages/statistics.scm
+++ b/gnu/packages/statistics.scm
@@ -3745,14 +3745,14 @@ selection.")
 (define-public r-tidyr
   (package
     (name "r-tidyr")
-    (version "1.1.2")
+    (version "1.1.3")
     (source
      (origin
        (method url-fetch)
        (uri (cran-uri "tidyr" version))
        (sha256
         (base32
-         "0v7x1pgmwmjypzdr4j2ig2klgrrgryi3qvw8hwqv65a5h9kwpz08"))))
+         "0cpbrvr759z8p7r9lpkjhj2dcdymsbnaib0rma9b4jb7i3qzmh2a"))))
     (build-system r-build-system)
     (propagated-inputs
      `(("r-cpp11" ,r-cpp11)
-- 
cgit v1.2.3


From 83f98e6317501fd56d9276a9dd8ec5420aaaee8e Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus <rekado@elephly.net>
Date: Tue, 9 Mar 2021 21:42:45 +0100
Subject: gnu: r-hmisc: Update to 4.5-0.

* gnu/packages/statistics.scm (r-hmisc): Update to 4.5-0.
---
 gnu/packages/statistics.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

(limited to 'gnu/packages/statistics.scm')

diff --git a/gnu/packages/statistics.scm b/gnu/packages/statistics.scm
index 39843ed631..7aa5df25bf 100644
--- a/gnu/packages/statistics.scm
+++ b/gnu/packages/statistics.scm
@@ -4033,13 +4033,13 @@ package instead.")
 (define-public r-hmisc
   (package
     (name "r-hmisc")
-    (version "4.4-2")
+    (version "4.5-0")
     (source
      (origin
        (method url-fetch)
        (uri (cran-uri "Hmisc" version))
        (sha256
-        (base32 "1j7vkckmahdh90ndcl646sjpxq82y4x55ngxqvkni22mv16wc2j9"))))
+        (base32 "11qj73zj16p113jpwn2vv06l99kqlcxcmrldbpyi5s7pwing9jnx"))))
     (properties `((upstream-name . "Hmisc")))
     (build-system r-build-system)
     (native-inputs
-- 
cgit v1.2.3


From 12580eb435b4a43be76ad3b900657ec67a70fee7 Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus <rekado@elephly.net>
Date: Tue, 9 Mar 2021 21:42:48 +0100
Subject: gnu: r-beeswarm: Update to 0.3.1.

* gnu/packages/statistics.scm (r-beeswarm): Update to 0.3.1.
---
 gnu/packages/statistics.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

(limited to 'gnu/packages/statistics.scm')

diff --git a/gnu/packages/statistics.scm b/gnu/packages/statistics.scm
index 7aa5df25bf..5c592f29e9 100644
--- a/gnu/packages/statistics.scm
+++ b/gnu/packages/statistics.scm
@@ -4352,13 +4352,13 @@ within a category based on their density using quasirandom noise.")
 (define-public r-beeswarm
   (package
     (name "r-beeswarm")
-    (version "0.2.3")
+    (version "0.3.1")
     (source (origin
               (method url-fetch)
               (uri (cran-uri "beeswarm" version))
               (sha256
                (base32
-                "0hy89bwv7jixlg91li1fywa77916am2whqp1m1fx1khd45g44581"))))
+                "1jsggypyww77hkcic03kdb3fp8h938qs142xi0lapzh62bkn2pjj"))))
     (build-system r-build-system)
     (home-page "https://www.cbs.dtu.dk/~eklund/beeswarm/")
     (synopsis "Implementation of bee swarm plots")
-- 
cgit v1.2.3


From 27b17f5e6ccd173f156b40299f7cdfb332979512 Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus <rekado@elephly.net>
Date: Tue, 9 Mar 2021 21:42:51 +0100
Subject: gnu: r-matrixmodels: Update to 0.5-0.

* gnu/packages/statistics.scm (r-matrixmodels): Update to 0.5-0.
---
 gnu/packages/statistics.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

(limited to 'gnu/packages/statistics.scm')

diff --git a/gnu/packages/statistics.scm b/gnu/packages/statistics.scm
index 5c592f29e9..da5fb96a88 100644
--- a/gnu/packages/statistics.scm
+++ b/gnu/packages/statistics.scm
@@ -5087,14 +5087,14 @@ metrics for evaluating models.")
 (define-public r-matrixmodels
   (package
     (name "r-matrixmodels")
-    (version "0.4-1")
+    (version "0.5-0")
     (source
      (origin
        (method url-fetch)
        (uri (cran-uri "MatrixModels" version))
        (sha256
         (base32
-         "0cyfvhci2p1vr2x52ymkyqqs63x1qchn856dh2j94yb93r08x1zy"))))
+         "1va6i6bpkq71rzl9i4xgyc5x7qcksa3nfzihlaggf6aj30dayzx8"))))
     (properties `((upstream-name . "MatrixModels")))
     (build-system r-build-system)
     (propagated-inputs
-- 
cgit v1.2.3


From 15add0c264491e4c6a46b1bc07e946f14533e14f Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus <rekado@elephly.net>
Date: Tue, 9 Mar 2021 21:42:54 +0100
Subject: gnu: r-quantreg: Update to 5.85.

* gnu/packages/statistics.scm (r-quantreg): Update to 5.85.
---
 gnu/packages/statistics.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

(limited to 'gnu/packages/statistics.scm')

diff --git a/gnu/packages/statistics.scm b/gnu/packages/statistics.scm
index da5fb96a88..cf9a6f3864 100644
--- a/gnu/packages/statistics.scm
+++ b/gnu/packages/statistics.scm
@@ -5109,13 +5109,13 @@ using modular prediction and response module classes.")
 (define-public r-quantreg
   (package
     (name "r-quantreg")
-    (version "5.83")
+    (version "5.85")
     (source
      (origin
        (method url-fetch)
        (uri (cran-uri "quantreg" version))
        (sha256
-        (base32 "05vbnz88qxk141dfxwl6ql2zshw15h0hddf8ajnsk2dxfdb6vdkp"))))
+        (base32 "1y8sgl16yby1k7g23y6bdnfllwnxj3iik3fqp96iwm5jd8blb7q4"))))
     (build-system r-build-system)
     (native-inputs
      `(("gfortran" ,gfortran)))
-- 
cgit v1.2.3


From 382f539b5e4ff49011c748ade94e6c9c81c15309 Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus <rekado@elephly.net>
Date: Tue, 9 Mar 2021 21:42:57 +0100
Subject: gnu: r-pbkrtest: Update to 0.5.1.

* gnu/packages/statistics.scm (r-pbkrtest): Update to 0.5.1.
---
 gnu/packages/statistics.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

(limited to 'gnu/packages/statistics.scm')

diff --git a/gnu/packages/statistics.scm b/gnu/packages/statistics.scm
index cf9a6f3864..c98299a780 100644
--- a/gnu/packages/statistics.scm
+++ b/gnu/packages/statistics.scm
@@ -5199,14 +5199,14 @@ C++ library for numerical linear algebra and RcppEigen glue.")
 (define-public r-pbkrtest
   (package
     (name "r-pbkrtest")
-    (version "0.5-0.1")
+    (version "0.5.1")
     (source
      (origin
        (method url-fetch)
        (uri (cran-uri "pbkrtest" version))
        (sha256
         (base32
-         "0sgl8r74cknmp8lnq5jvc1w181274ylgk6w4pxf4mzkfii42argm"))))
+         "1if7msv9i7jhg1as1f7m81a95dnwhwj3yfs24bqr0f6r0ch4b8xj"))))
     (build-system r-build-system)
     (propagated-inputs
      `(("r-broom" ,r-broom)
-- 
cgit v1.2.3


From 6a38d580c7546ef826ccc9d8ab34d921ac001943 Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus <rekado@elephly.net>
Date: Tue, 9 Mar 2021 21:43:01 +0100
Subject: gnu: r-lubridate: Update to 1.7.10.

* gnu/packages/statistics.scm (r-lubridate): Update to 1.7.10.
---
 gnu/packages/statistics.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

(limited to 'gnu/packages/statistics.scm')

diff --git a/gnu/packages/statistics.scm b/gnu/packages/statistics.scm
index c98299a780..6ef89185f1 100644
--- a/gnu/packages/statistics.scm
+++ b/gnu/packages/statistics.scm
@@ -5506,14 +5506,14 @@ is supported.")
 (define-public r-lubridate
   (package
     (name "r-lubridate")
-    (version "1.7.9.2")
+    (version "1.7.10")
     (source
      (origin
        (method url-fetch)
        (uri (cran-uri "lubridate" version))
        (sha256
         (base32
-         "0yfvlgksasmia7rsp83lsipjpgvlly5qkldcfxj68lfaz9l2sspf"))))
+         "1s653d6rnpf9bkynxmbq4fdjdcz7r9ma19aph8f5y9ck70his4hm"))))
     (build-system r-build-system)
     (propagated-inputs
      `(("r-generics" ,r-generics)
-- 
cgit v1.2.3


From 3a82f1fba2acdcaacd40d4730f3f84ccf0717392 Mon Sep 17 00:00:00 2001
From: Lars-Dominik Braun <ldb@leibniz-psychology.org>
Date: Fri, 12 Mar 2021 14:22:17 +0100
Subject: gnu: Add r-quantpsyc.

* gnu/packages/statistics.scm (r-quantpsyc): New variable.
---
 gnu/packages/statistics.scm | 21 +++++++++++++++++++++
 1 file changed, 21 insertions(+)

(limited to 'gnu/packages/statistics.scm')

diff --git a/gnu/packages/statistics.scm b/gnu/packages/statistics.scm
index 6ef89185f1..65a210a63b 100644
--- a/gnu/packages/statistics.scm
+++ b/gnu/packages/statistics.scm
@@ -5931,3 +5931,24 @@ popular stats packages like SAS, Stata and SPSS.")
     (home-page "https://github.com/WizardMac/ReadStat")
     (license license:expat)))
 
+(define-public r-quantpsyc
+  (package
+    (name "r-quantpsyc")
+    (version "1.5")
+    (source
+      (origin
+        (method url-fetch)
+        (uri (cran-uri "QuantPsyc" version))
+        (sha256
+          (base32
+            "1i9bh88r8zxndzjqsj14qw64gnvm5a9kvhjhzk3qsrvl3qzjgh93"))))
+    (properties `((upstream-name . "QuantPsyc")))
+    (build-system r-build-system)
+    (propagated-inputs
+      `(("r-boot" ,r-boot) ("r-mass" ,r-mass)))
+    (home-page "https://cran.r-project.org/web/packages/QuantPsyc/")
+    (synopsis "Quantitative Psychology Tools")
+    (description
+      "Contains functions useful for data screening, testing moderation,
+mediation and estimating power.")
+    (license license:gpl2+)))
-- 
cgit v1.2.3


From 28df54d77675a2247de17a8e45f57a0c613fb152 Mon Sep 17 00:00:00 2001
From: Lars-Dominik Braun <ldb@leibniz-psychology.org>
Date: Fri, 12 Mar 2021 14:26:13 +0100
Subject: gnu: Add r-clubsandwich.

* gnu/packages/statistics.scm (r-clubsandwich): New variable.
---
 gnu/packages/statistics.scm | 38 ++++++++++++++++++++++++++++++++++++++
 1 file changed, 38 insertions(+)

(limited to 'gnu/packages/statistics.scm')

diff --git a/gnu/packages/statistics.scm b/gnu/packages/statistics.scm
index 65a210a63b..3f3c4e3912 100644
--- a/gnu/packages/statistics.scm
+++ b/gnu/packages/statistics.scm
@@ -5952,3 +5952,41 @@ popular stats packages like SAS, Stata and SPSS.")
       "Contains functions useful for data screening, testing moderation,
 mediation and estimating power.")
     (license license:gpl2+)))
+
+(define-public r-clubsandwich
+  (package
+    (name "r-clubsandwich")
+    (version "0.5.3")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (cran-uri "clubSandwich" version))
+       (sha256
+        (base32
+         "0jazgka18bb5n58d5sn94q7rc9sac82qrpl2i5b4rkx9q2pb39cn"))))
+    (properties `((upstream-name . "clubSandwich")))
+    (build-system r-build-system)
+    (propagated-inputs
+     `(("r-sandwich" ,r-sandwich)))
+    (native-inputs `(("r-knitr" ,r-knitr)))
+    (home-page "https://github.com/jepusto/clubSandwich")
+    (synopsis "Cluster-Robust (Sandwich) Variance Estimators with Small-Sample
+Corrections")
+    (description
+     "Provides several cluster-robust variance estimators (i.e.,
+sandwich estimators) for ordinary and weighted least squares linear regression
+models, including the bias-reduced linearization estimator introduced by Bell
+and McCaffrey (2002)
+@url{http://www.statcan.gc.ca/pub/12-001-x/2002002/article/9058-eng.pdf} and
+developed further by Pustejovsky and Tipton (2017)
+@url{doi:10.1080/07350015.2016.1247004}.  The package includes functions for estimating
+the variance- covariance matrix and for testing single- and multiple-
+contrast hypotheses based on Wald test statistics.  Tests of single regression
+coefficients use Satterthwaite or saddle-point corrections.  Tests of multiple-
+contrast hypotheses use an approximation to Hotelling's T-squared distribution.
+Methods are provided for a variety of fitted models, including @code{lm()} and
+@code{mlm} objects, @code{glm()}, ivreg (from package @code{AER}), @code{plm()}
+(from package @code{plm}), @code{gls()} and @code{lme()} (from @code{nlme}),
+@code{robu()} (from @code{robumeta}), and @code{rma.uni()} and @code{rma.mv()}
+(from @code{metafor}).")
+    (license license:gpl3)))
-- 
cgit v1.2.3


From 8a8e8198ec4ebedd0400c8adcd85e15da3d43ca0 Mon Sep 17 00:00:00 2001
From: Lars-Dominik Braun <ldb@leibniz-psychology.org>
Date: Fri, 12 Mar 2021 14:29:07 +0100
Subject: gnu: Add r-puniform.

* gnu/packages/statistics.scm (r-puniform): New variable.
---
 gnu/packages/statistics.scm | 68 +++++++++++++++++++++++++++++++++++++++++++++
 1 file changed, 68 insertions(+)

(limited to 'gnu/packages/statistics.scm')

diff --git a/gnu/packages/statistics.scm b/gnu/packages/statistics.scm
index 3f3c4e3912..9761b9ceaf 100644
--- a/gnu/packages/statistics.scm
+++ b/gnu/packages/statistics.scm
@@ -5990,3 +5990,71 @@ Methods are provided for a variety of fitted models, including @code{lm()} and
 @code{robu()} (from @code{robumeta}), and @code{rma.uni()} and @code{rma.mv()}
 (from @code{metafor}).")
     (license license:gpl3)))
+
+(define-public r-puniform
+  (package
+    (name "r-puniform")
+    (version "0.2.4")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (cran-uri "puniform" version))
+       (sha256
+        (base32
+         "0v2977y9cwjx74xk0ig745g09wn7nrcsrg4f6v315sglsm18iaa8"))))
+    (properties `((upstream-name . "puniform")))
+    (build-system r-build-system)
+    (propagated-inputs
+     `(("r-adgoftest" ,r-adgoftest)
+       ("r-metafor" ,r-metafor)
+       ("r-rcpp" ,r-rcpp)
+       ("r-rcpparmadillo" ,r-rcpparmadillo)))
+    (home-page
+     "https://github.com/RobbievanAert/puniform")
+    (synopsis
+     "Meta-Analysis Methods Correcting for Publication Bias")
+    (description
+     "This package provides meta-analysis methods that correct for publication
+bias and outcome reporting bias.  Four methods and a visual tool are currently
+included in the package.
+
+@enumerate
+@item The p-uniform method as described in van Assen, van Aert, and Wicherts
+(2015) @url{doi:10.1037/met0000025} can be used for estimating the average
+effect size, testing the null hypothesis of no effect, and testing for
+publication bias using only the statistically significant effect sizes of
+primary studies.
+
+@item The p-uniform* method as described in van Aert and van Assen (2019)
+@url{doi:10.31222/osf.io/zqjr9}.  This method is an extension of the p-uniform
+method that allows for estimation of the average effect size and the
+between-study variance in a meta-analysis, and uses both the statistically
+significant and nonsignificant effect sizes.
+
+@item The hybrid method as described in van Aert and van Assen (2017)
+@url{doi:10.3758/s13428-017-0967-6}.  The hybrid method is a meta-analysis
+method for combining an original study and replication and while taking into
+account statistical significance of the  original study.  The p-uniform and
+hybrid method are based on the statistical theory that the distribution of
+p-values is uniform conditional on the population effect size.
+
+@item
+The fourth method in the package is the Snapshot Bayesian Hybrid Meta-Analysis
+Method as described in van Aert and van Assen (2018)
+@url{doi:10.1371/journal.pone.0175302}.  This method computes posterior
+probabilities for four true effect sizes (no, small, medium, and large) based
+on an original study and replication while taking into account publication bias
+in the original study.  The method can also be used for computing the required
+sample size of the replication akin to power analysis in null hypothesis
+significance testing.
+@end enumerate
+
+The meta-plot is a visual tool for meta-analysis that
+provides information on the primary studies in the meta-analysis, the results
+of the meta-analysis, and characteristics of the research on the effect under
+study (van Assen and others, 2020).
+
+Helper functions to apply the Correcting for Outcome Reporting Bias (CORB)
+method to correct for outcome reporting bias in a meta-analysis (van Aert &
+Wicherts, 2020).")
+    (license license:gpl2+)))
-- 
cgit v1.2.3


From c4e826bbd2dd22bd7005cbb5e32e2a5018e6216d Mon Sep 17 00:00:00 2001
From: Lars-Dominik Braun <ldb@leibniz-psychology.org>
Date: Mon, 15 Mar 2021 09:08:30 +0100
Subject: gnu: Add r-esc.

* gnu/packages/statistics.scm (r-esc): New variable.
---
 gnu/packages/statistics.scm | 25 +++++++++++++++++++++++++
 1 file changed, 25 insertions(+)

(limited to 'gnu/packages/statistics.scm')

diff --git a/gnu/packages/statistics.scm b/gnu/packages/statistics.scm
index 9761b9ceaf..86a818da9e 100644
--- a/gnu/packages/statistics.scm
+++ b/gnu/packages/statistics.scm
@@ -6058,3 +6058,28 @@ Helper functions to apply the Correcting for Outcome Reporting Bias (CORB)
 method to correct for outcome reporting bias in a meta-analysis (van Aert &
 Wicherts, 2020).")
     (license license:gpl2+)))
+
+(define-public r-esc
+  (package
+    (name "r-esc")
+    (version "0.5.1")
+    (source
+      (origin
+        (method url-fetch)
+        (uri (cran-uri "esc" version))
+        (sha256
+          (base32
+            "0gns7gz55p6pha05413r3hlvd7f2v1amxkg13d197mab1ypqic7q"))))
+    (properties `((upstream-name . "esc")))
+    (build-system r-build-system)
+    (home-page "https://strengejacke.github.io/esc/")
+    (synopsis
+      "Effect Size Computation for Meta Analysis")
+    (description
+      "Implementation of the web-based
+@url{http://www.campbellcollaboration.org/escalc/html/EffectSizeCalculator-Home.php,'Practical
+Meta-Analysis Effect Size Calculator'} from David B. Wilson in R.  Based on the
+input, the effect size can be returned as standardized mean difference, Cohen's
+f, Hedges' g, Pearson's r or Fisher's transformation z, odds ratio or log odds,
+or eta squared effect size.")
+    (license license:gpl3)))
-- 
cgit v1.2.3


From fe903cb89d62045a52bdd3195c5b20f866e54bed Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus <rekado@elephly.net>
Date: Mon, 15 Mar 2021 13:42:13 +0100
Subject: gnu: r-survival: Update to 3.2-9.

* gnu/packages/statistics.scm (r-survival): Update to 3.2-9.
---
 gnu/packages/statistics.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

(limited to 'gnu/packages/statistics.scm')

diff --git a/gnu/packages/statistics.scm b/gnu/packages/statistics.scm
index 86a818da9e..5b9a6368f4 100644
--- a/gnu/packages/statistics.scm
+++ b/gnu/packages/statistics.scm
@@ -710,14 +710,14 @@ analysis.")
 (define-public r-survival
   (package
     (name "r-survival")
-    (version "3.2-7")
+    (version "3.2-9")
     (source
      (origin
        (method url-fetch)
        (uri (cran-uri "survival" version))
        (sha256
         (base32
-         "0ila864g5b9yhjhk3jirgdpi06sksc0axa78890dmkvyv9rwsmjk"))))
+         "1dkpdci2lvx141193wd69445y65w8k2pa89lc3l83i5jaj56svdn"))))
     (build-system r-build-system)
     (propagated-inputs
      `(("r-matrix" ,r-matrix)))
-- 
cgit v1.2.3


From 2fc2983e595439fbd346c5458fd515a0c29a9d61 Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus <rekado@elephly.net>
Date: Mon, 15 Mar 2021 13:42:17 +0100
Subject: gnu: r-formatr: Update to 1.8.

* gnu/packages/statistics.scm (r-formatr): Update to 1.8.
[native-inputs]: Add r-knitr.
---
 gnu/packages/statistics.scm | 6 ++++--
 1 file changed, 4 insertions(+), 2 deletions(-)

(limited to 'gnu/packages/statistics.scm')

diff --git a/gnu/packages/statistics.scm b/gnu/packages/statistics.scm
index 5b9a6368f4..37968095ce 100644
--- a/gnu/packages/statistics.scm
+++ b/gnu/packages/statistics.scm
@@ -1329,14 +1329,16 @@ adapted for other output formats, such as HTML or LaTeX.")
 (define-public r-formatr
   (package
     (name "r-formatr")
-    (version "1.7")
+    (version "1.8")
     (source (origin
               (method url-fetch)
               (uri (cran-uri "formatR" version))
               (sha256
                (base32
-                "1nsxbrx31k3y6yql30qkrvdfyznlia2qfvwv95mfiy7m7wdn4rm3"))))
+                "04q6y53ji7ll131khbwiz584wl8sinhh3z82p6r8dqa9f618ay6z"))))
     (build-system r-build-system)
+    (native-inputs
+     `(("r-knitr" ,r-knitr)))
     (home-page "https://yihui.org/formatr/")
     (synopsis "Format R code automatically")
     (description
-- 
cgit v1.2.3


From 2e2cc58681dbca41cf35f01d11d06dad91d5c717 Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus <rekado@elephly.net>
Date: Mon, 15 Mar 2021 13:42:20 +0100
Subject: gnu: r-rcpparmadillo: Update to 0.10.2.2.0.

* gnu/packages/statistics.scm (r-rcpparmadillo): Update to 0.10.2.2.0.
---
 gnu/packages/statistics.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

(limited to 'gnu/packages/statistics.scm')

diff --git a/gnu/packages/statistics.scm b/gnu/packages/statistics.scm
index 37968095ce..1d4d7d06a8 100644
--- a/gnu/packages/statistics.scm
+++ b/gnu/packages/statistics.scm
@@ -2635,13 +2635,13 @@ well as additional utilities such as panel and axis annotation functions.")
 (define-public r-rcpparmadillo
   (package
     (name "r-rcpparmadillo")
-    (version "0.10.2.1.0")
+    (version "0.10.2.2.0")
     (source (origin
               (method url-fetch)
               (uri (cran-uri "RcppArmadillo" version))
               (sha256
                (base32
-                "03i9npq2mcv08ppp1ab2vzr412d4q9vldcc87nz2djbh9ai3xnv5"))))
+                "193smj6vp3cn3qjhrx2llgi5c7hs069crhvi85xj2vzx80fx6r9q"))))
     (properties `((upstream-name . "RcppArmadillo")))
     (build-system r-build-system)
     (propagated-inputs
-- 
cgit v1.2.3


From 53dff6ac8ffaeeaa704957b83b2245d4494b030a Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus <rekado@elephly.net>
Date: Mon, 15 Mar 2021 13:42:24 +0100
Subject: gnu: r-rsqlite: Update to 2.2.4.

* gnu/packages/statistics.scm (r-rsqlite): Update to 2.2.4.
---
 gnu/packages/statistics.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

(limited to 'gnu/packages/statistics.scm')

diff --git a/gnu/packages/statistics.scm b/gnu/packages/statistics.scm
index 1d4d7d06a8..a0f3f59342 100644
--- a/gnu/packages/statistics.scm
+++ b/gnu/packages/statistics.scm
@@ -2842,13 +2842,13 @@ a column in data frame.")
 (define-public r-rsqlite
   (package
     (name "r-rsqlite")
-    (version "2.2.3")
+    (version "2.2.4")
     (source (origin
               (method url-fetch)
               (uri (cran-uri "RSQLite" version))
               (sha256
                (base32
-                "1sps1qn1x5r5l216rx0yfda7zk365b2xyzii3zv6f78nzdsgadbj"))))
+                "050s7gv42v43d15yqj2sdrh82iikfpm32idfnw4nbjjjnlcg7wxf"))))
     (properties `((upstream-name . "RSQLite")))
     (build-system r-build-system)
     (propagated-inputs
-- 
cgit v1.2.3


From 1a265842e634656411bc7304c4648273f174f65e Mon Sep 17 00:00:00 2001
From: Mark H Weaver <mhw@netris.org>
Date: Wed, 17 Mar 2021 03:42:12 -0400
Subject: gnu: Use PACKAGE/INHERIT in more places.

* gnu/packages/algebra.scm (fftwf, fftw-openmpi),
gnu/packages/audio.scm (ztoolkit-rsvg),
gnu/packages/bioinformatics.scm (python2-dendropy),
gnu/packages/boost.scm (boost-with-python2),
gnu/packages/check.scm (python2-mock, python2-pytest-mock),
gnu/packages/cups.scm (hplip-minimal),
gnu/packages/freedesktop.scm (libinput-minimal),
gnu/packages/gettext.scm (gnu-gettext),
gnu/packages/glib.scm (python2-pygobject),
gnu/packages/gnome.scm (gdl-minimal, libsoup-minimal, python2-pyatspi),
gnu/packages/groff.scm (groff-minimal),
gnu/packages/jami.scm (ffmpeg-jami),
gnu/packages/libcanberra.scm (libcanberra/gtk+-2),
gnu/packages/lirc.scm (python2-lirc),
gnu/packages/llvm.scm (clang-runtime-3.5),
gnu/packages/mpi.scm (java-openmpi, openmpi-thread-multiple),
gnu/packages/node.scm (libnode),
gnu/packages/onc-rpc.scm (libtirpc/hurd),
gnu/packages/python-compression.scm (bitshuffle-for-snappy),
gnu/packages/python-crypto.scm (python2-pycrypto, python2-cryptography)
(python2-cryptography, python2-m2crypto),
gnu/packages/python-web.scm (python2-html2text, python2-tornado)
(python2-terminado, python2-ndg-httpsclient, python2-websocket-client)
(python2-rauth, python2-url, python2-s3transfer),
gnu/packages/python-xyz.scm (python2-psutil, python2-serpent)
(python2-humanfriendly, python2-empy, python2-parse-type, python2-polib)
(python2-jsonschema, python2-pystache, python2-cython, python2-numpydoc)
(python2-ipyparallel, python2-traitlets, python2-dbus)
(python2-beautifulsoup4, python2-pep517, python2-flake8, python2-llfuse)
(python2-tlsh, python-file, python2-notebook, python-jupyter-console-minimal)
(python2-contextlib2, python2-promise, python2-anyjson, python2-amqp)
(python2-kombu, python2-billiard, python2-celery, python2-whoosh)
(python2-jellyfish, python-rope, ptpython-2, python2-binaryornot)
(python2-setproctitle, python2-argcomplete, python2-xopen, python2-isort)
(python2-radon, python2-rfc6555, python2-activepapers, python2-send2trash)
(python2-cloudpickle, python2-reparser),
gnu/packages/python.scm (python2-called-python),
gnu/packages/qt.scm (python2-sip, python-pyqt-without-qtwebkit, python2-pyqt)
(python-qscintilla, python-pyqt+qscintilla),
gnu/packages/scanner.scm (sane-backends),
gnu/packages/sdl.scm (guile3.0-sdl2),
gnu/packages/selinux.scm (checkpolicy, libselinux, libsemanage, secilc)
(python-sepolgen, policycoreutils),
gnu/packages/serialization.scm (lua5.1-libmpack, lua5.2-libmpack),
gnu/packages/simulation.scm (fenics),
gnu/packages/statistics.scm (python2-statsmodels),
gnu/packages/texinfo.scm (info-reader),
gnu/packages/wxwidgets.scm (wxwidgets-gtk2, wxwidgets-gtk2-3.1),
gnu/packages/xml.scm (xmlsec-nss),
gnu/packages/xorg.scm (uim-gtk, uim-qt),
guix/build-system/python.scm (package-with-explicit-python)
(strip-python2-variant): Use PACKAGE/INHERIT.
---
 gnu/packages/statistics.scm | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

(limited to 'gnu/packages/statistics.scm')

diff --git a/gnu/packages/statistics.scm b/gnu/packages/statistics.scm
index a0f3f59342..27f3bfa8ef 100644
--- a/gnu/packages/statistics.scm
+++ b/gnu/packages/statistics.scm
@@ -1981,7 +1981,7 @@ inference for statistical models.")
 
 (define-public python2-statsmodels
   (let ((stats (package-with-python2 python-statsmodels)))
-    (package (inherit stats)
+    (package/inherit stats
       (propagated-inputs
        `(("python2-pytz" ,python2-pytz)
          ("python2-numpy" ,python2-numpy)
-- 
cgit v1.2.3