From ce7e361fa30d3dbe5c1da35f52dade2eb829aed7 Mon Sep 17 00:00:00 2001
From: Efraim Flashner <efraim@flashner.co.il>
Date: Tue, 4 Jul 2017 15:21:33 +0300
Subject: gnu: gemma: Fix building on non-Intel architectures.

* gnu/packages/patches/gemma-intel-compat.patch: New file.
* gnu/packages/bioinformatics.scm (gemma)[source]: Add patch.
[arguments]: Add NO_INTEL_COMPAT flag on non-Intel architectures.
* gnu/local.mk (dist_patch_DATA): Register patch.
---
 gnu/packages/patches/gemma-intel-compat.patch | 44 +++++++++++++++++++++++++++
 1 file changed, 44 insertions(+)
 create mode 100644 gnu/packages/patches/gemma-intel-compat.patch

(limited to 'gnu/packages/patches')

diff --git a/gnu/packages/patches/gemma-intel-compat.patch b/gnu/packages/patches/gemma-intel-compat.patch
new file mode 100644
index 0000000000..f12ec56d9b
--- /dev/null
+++ b/gnu/packages/patches/gemma-intel-compat.patch
@@ -0,0 +1,44 @@
+From da1ed24209121f7b0f03f360b1029d7125a38e70 Mon Sep 17 00:00:00 2001
+From: Efraim Flashner <efraim@flashner.co.il>
+Date: Tue, 4 Jul 2017 12:44:53 +0300
+Subject: [PATCH] Add NO_INTEL_COMPAT flag to Makefile.
+
+see also: https://github.com/xiangzhou/GEMMA/pull/47
+
+---
+ Makefile | 12 ++++++++----
+ 1 file changed, 8 insertions(+), 4 deletions(-)
+
+diff --git a/Makefile b/Makefile
+index 5bb8748..712b1ad 100644
+--- a/Makefile
++++ b/Makefile
+@@ -11,6 +11,7 @@
+ SYS = LNX
+ # Leave blank after "=" to disable; put "= 1" to enable
+ WITH_LAPACK = 1
++NO_INTEL_COMPAT = 
+ FORCE_32BIT = 
+ FORCE_DYNAMIC = 
+ DIST_NAME = gemma-0.96
+@@ -64,10 +65,13 @@ endif
+   HDR += $(SRC_DIR)/lapack.h
+ endif
+ 
+-ifdef FORCE_32BIT
+-  CPPFLAGS += -m32
+-else
+-  CPPFLAGS += -m64
++ifdef NO_INTEL_COMPAT
++  else
++  ifdef FORCE_32BIT
++    CPPFLAGS += -m32
++  else
++    CPPFLAGS += -m64
++  endif
+ endif
+ 
+ ifdef FORCE_DYNAMIC
+-- 
+2.13.2
+
-- 
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