From c1a86b666f1a5ece3251bab0be4929167e84b410 Mon Sep 17 00:00:00 2001 From: Marius Bakke Date: Wed, 4 Mar 2020 12:34:34 +0100 Subject: gnu: appstream-glib: Update to 0.7.17. * gnu/packages/patches/appstream-glib-2020.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Adjust accordingly. * gnu/packages/glib.scm (appstream-glib): Update to 0.7.17. [source](patches): Remove. --- gnu/packages/patches/appstream-glib-2020.patch | 31 -------------------------- 1 file changed, 31 deletions(-) delete mode 100644 gnu/packages/patches/appstream-glib-2020.patch (limited to 'gnu/packages/patches') diff --git a/gnu/packages/patches/appstream-glib-2020.patch b/gnu/packages/patches/appstream-glib-2020.patch deleted file mode 100644 index ab8a4bbdee..0000000000 --- a/gnu/packages/patches/appstream-glib-2020.patch +++ /dev/null @@ -1,31 +0,0 @@ -2020 is no longer the future. - -Taken from upstream: -https://github.com/hughsie/appstream-glib/commit/953c8e529d7291e60a95e580967ed79ce2c9ccf0 - -diff --git a/data/tests/broken.appdata.xml b/data/tests/broken.appdata.xml -index f7a5386e..cf80f5b4 100644 ---- a/data/tests/broken.appdata.xml -+++ b/data/tests/broken.appdata.xml -@@ -40,7 +40,7 @@ -

This is a duplicate release on the same day!

- - -- -+ - -

This is a release in the future!

- -diff --git a/libappstream-glib/as-app-validate.c b/libappstream-glib/as-app-validate.c -index c1103ace..f50e4e41 100644 ---- a/libappstream-glib/as-app-validate.c -+++ b/libappstream-glib/as-app-validate.c -@@ -864,7 +864,7 @@ as_app_validate_release (AsApp *app, - AS_PROBLEM_KIND_ATTRIBUTE_MISSING, - " has no timestamp"); - } -- if (timestamp > 20120101 && timestamp < 20251231) { -+ if (timestamp > 20120101 && timestamp < 20351231) { - ai_app_validate_add (helper, - AS_PROBLEM_KIND_ATTRIBUTE_INVALID, - " timestamp should be a UNIX time"); -- cgit v1.2.3 From 0a7aa6922b8ad121bfcf023346f9f9bb97099504 Mon Sep 17 00:00:00 2001 From: Marius Bakke Date: Wed, 4 Mar 2020 12:36:51 +0100 Subject: gnu: libgit2: Update to 0.99.0. * gnu/packages/patches/libgit2-avoid-python.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Adjust accordingly. * gnu/packages/version-control.scm (libgit2): Update to 0.99.0. [source](patches): Remove 'libgit2-avoid-python.patch'. [source](snippet): Preserve bundled copy of http-parser. [arguments]: Remove "-DUSE_SHA1DC" from #:configure-flags, which is no longer optional and enabled by default. Add "-DUSE_NTLMCLIENT=OFF" and "-DREGEX_BACKEND=pcre2". Add phase 'fix-pcre2-reference'. [inputs]: Remove HTTP-PARSER. [propagated-inputs]: Add PCRE2. [native-inputs]: Remove GUILE-2.2. Add PYTHON. --- gnu/packages/patches/libgit2-avoid-python.patch | 322 ------------------------ 1 file changed, 322 deletions(-) delete mode 100644 gnu/packages/patches/libgit2-avoid-python.patch (limited to 'gnu/packages/patches') diff --git a/gnu/packages/patches/libgit2-avoid-python.patch b/gnu/packages/patches/libgit2-avoid-python.patch deleted file mode 100644 index b2e5141563..0000000000 --- a/gnu/packages/patches/libgit2-avoid-python.patch +++ /dev/null @@ -1,322 +0,0 @@ -This provides a Guile reimplementation of clar's "generate.py". -It makes it possible for us to remove Python from libgit2's build-time -dependencies. -libgit2 is used in order to fetch a lot of sources for guix packages. -Both Python2 and Python3 builds acted up in the past. -Hence this patch which makes the number of libgit2 dependencies very -small. -The reimplementation tries to keep as close as possible to the original -in both structure and runtime effect. Some things are thus overly -convoluted just to make them the same as in the original. - -Both implementations basically do: - -grep -r 'test_.*__.*' . > clar.suite - -It is important that the directory traversal order of the original and -the reimplementation stay the same. - -diff -ruN orig/libgit2-0.27.7/tests/CMakeLists.txt libgit2-0.27.7/tests/CMakeLists.txt ---- orig/libgit2-0.27.7/tests/CMakeLists.txt 1970-01-01 01:00:00.000000000 +0100 -+++ libgit2-0.27.7/tests/CMakeLists.txt 2019-03-04 11:13:06.640118979 +0100 -@@ -1,10 +1,3 @@ --FIND_PACKAGE(PythonInterp) -- --IF(NOT PYTHONINTERP_FOUND) -- MESSAGE(FATAL_ERROR "Could not find a python interpeter, which is needed to build the tests. " -- "Make sure python is available, or pass -DBUILD_CLAR=OFF to skip building the tests") --ENDIF() -- - SET(CLAR_FIXTURES "${CMAKE_CURRENT_SOURCE_DIR}/resources/") - SET(CLAR_PATH "${CMAKE_CURRENT_SOURCE_DIR}") - ADD_DEFINITIONS(-DCLAR_FIXTURE_PATH=\"${CLAR_FIXTURES}\") -@@ -21,7 +14,7 @@ - - ADD_CUSTOM_COMMAND( - OUTPUT ${CMAKE_CURRENT_BINARY_DIR}/clar.suite -- COMMAND ${PYTHON_EXECUTABLE} generate.py -o "${CMAKE_CURRENT_BINARY_DIR}" -f -xonline -xstress -xperf . -+ COMMAND guile generate.scm -o "${CMAKE_CURRENT_BINARY_DIR}" -f -x online -x stress -x perf . - DEPENDS ${SRC_TEST} - WORKING_DIRECTORY ${CLAR_PATH} - ) -diff -ruN orig/libgit2-0.27.7/tests/generate.scm libgit2-0.27.7/tests/generate.scm ---- orig/libgit2-0.27.7/tests/generate.scm 1970-01-01 01:00:00.000000000 +0100 -+++ libgit2-0.27.7/tests/generate.scm 2019-03-04 12:18:00.688040975 +0100 -@@ -0,0 +1,277 @@ -+;; -*- geiser-scheme-implementation: guile -*- -+ -+;;; Implementation: Danny Milosavljevic -+;;; Based on: Implementation in Python by Vicent Marti. -+;;; License: ISC, like the original generate.py in clar. -+ -+(use-modules (ice-9 ftw)) -+(use-modules (ice-9 regex)) -+(use-modules (ice-9 getopt-long)) -+(use-modules (ice-9 rdelim)) -+(use-modules (ice-9 match)) -+(use-modules (ice-9 textual-ports)) -+(use-modules (srfi srfi-1)) -+ -+(define (render-callback cb) -+ (if cb -+ (string-append " { \"" (assoc-ref cb "short-name") "\", &" -+ (assoc-ref cb "symbol") " }") -+ " { NULL, NULL }")) -+ -+(define (replace needle replacement haystack) -+ "Replace all occurences of NEEDLE in HAYSTACK by REPLACEMENT. -+NEEDLE is a regular expression." -+ (regexp-substitute/global #f needle haystack 'pre replacement 'post)) -+ -+(define (skip-comments* text) -+ (call-with-input-string -+ text -+ (lambda (port) -+ (let loop ((result '()) -+ (section #f)) -+ (define (consume-char) -+ (cons (read-char port) result)) -+ (define (skip-char) -+ (read-char port) -+ result) -+ (match section -+ (#f -+ (match (peek-char port) -+ (#\/ (loop (consume-char) 'almost-in-block-comment)) -+ (#\" (loop (consume-char) 'in-string-literal)) -+ (#\' (loop (consume-char) 'in-character-literal)) -+ ((? eof-object?) result) -+ (_ (loop (consume-char) section)))) -+ ('almost-in-block-comment -+ (match (peek-char port) -+ (#\* (loop (consume-char) 'in-block-comment)) -+ (#\/ (loop (consume-char) 'in-line-comment)) -+ ((? eof-object?) result) -+ (_ (loop (consume-char) #f)))) -+ ('in-line-comment -+ (match (peek-char port) -+ (#\newline (loop (consume-char) #f)) -+ ((? eof-object?) result) -+ (_ (loop (skip-char) section)))) -+ ('in-block-comment -+ (match (peek-char port) -+ (#\* (loop (skip-char) 'almost-out-of-block-comment)) -+ ((? eof-object?) result) -+ (_ (loop (skip-char) section)))) -+ ('almost-out-of-block-comment -+ (match (peek-char port) -+ (#\/ (loop (cons (read-char port) (cons #\* result)) #f)) -+ (#\* (loop (skip-char) 'almost-out-of-block-comment)) -+ ((? eof-object?) result) -+ (_ (loop (skip-char) 'in-block-comment)))) -+ ('in-string-literal -+ (match (peek-char port) -+ (#\\ (loop (consume-char) 'in-string-literal-escape)) -+ (#\" (loop (consume-char) #f)) -+ ((? eof-object?) result) -+ (_ (loop (consume-char) section)))) -+ ('in-string-literal-escape -+ (match (peek-char port) -+ ((? eof-object?) result) -+ (_ (loop (consume-char) 'in-string-literal)))) -+ ('in-character-literal -+ (match (peek-char port) -+ (#\\ (loop (consume-char) 'in-character-literal-escape)) -+ (#\' (loop (consume-char) #f)) -+ ((? eof-object?) result) -+ (_ (loop (consume-char) section)))) -+ ('in-character-literal-escape -+ (match (peek-char port) -+ ((? eof-object?) result) -+ (_ (loop (consume-char) 'in-character-literal))))))))) -+ -+(define (skip-comments text) -+ (list->string (reverse (skip-comments* text)))) -+ -+(define (maybe-only items) -+ (match items -+ ((a) a) -+ (_ #f))) -+ -+(define (Module name path excludes) -+ (let* ((clean-name (replace "_" "::" name)) -+ (enabled (not (any (lambda (exclude) -+ (string-prefix? exclude clean-name)) -+ excludes)))) -+ (define (parse contents) -+ (define (cons-match match prev) -+ (cons -+ `(("declaration" . ,(match:substring match 1)) -+ ("symbol" . ,(match:substring match 2)) -+ ("short-name" . ,(match:substring match 3))) -+ prev)) -+ (let* ((contents (skip-comments contents)) -+ (entries (fold-matches (make-regexp -+ (string-append "^(void\\s+(test_" -+ name -+ "__(\\w+))\\s*\\(\\s*void\\s*\\))\\s*\\{") -+ regexp/newline) -+ contents -+ '() -+ cons-match)) -+ (entries (reverse entries)) -+ (callbacks (filter (lambda (entry) -+ (match (assoc-ref entry "short-name") -+ ("initialize" #f) -+ ("cleanup" #f) -+ (_ #t))) -+ entries))) -+ (if (> (length callbacks) 0) -+ `(("name" . ,name) -+ ("enabled" . ,(if enabled "1" "0")) -+ ("clean-name" . ,clean-name) -+ ("initialize" . ,(maybe-only (filter-map (lambda (entry) -+ (match (assoc-ref entry "short-name") -+ ("initialize" entry) -+ (_ #f))) -+ entries))) -+ ("cleanup" . ,(maybe-only (filter-map (lambda (entry) -+ (match (assoc-ref entry "short-name") -+ ("cleanup" entry) -+ (_ #f))) -+ entries))) -+ ("callbacks" . ,callbacks)) -+ #f))) -+ -+ (define (refresh path) -+ (and (file-exists? path) -+ (parse (call-with-input-file path get-string-all)))) -+ (refresh path))) -+ -+(define (generate-TestSuite path output excludes) -+ (define (load) -+ (define enter? (const #t)) -+ (define (leaf file stat result) -+ (let* ((module-root (string-drop (dirname file) -+ (string-length path))) -+ (module-root (filter-map (match-lambda -+ ("" #f) -+ (a a)) -+ (string-split module-root #\/)))) -+ (define (make-module path) -+ (let* ((name (string-join (append module-root (list (string-drop-right (basename path) (string-length ".c")))) "_")) -+ (name (replace "-" "_" name))) -+ (Module name path excludes))) -+ (if (string-suffix? ".c" file) -+ (let ((module (make-module file))) -+ (if module -+ (cons module result) -+ result)) -+ result))) -+ (define (down dir stat result) -+ result) -+ (define (up file state result) -+ result) -+ (define skip (const #f)) -+ (file-system-fold enter? leaf down up skip error '() path)) -+ -+ (define (CallbacksTemplate module) -+ (string-append "static const struct clar_func _clar_cb_" -+ (assoc-ref module "name") "[] = {\n" -+ (string-join (map render-callback -+ (assoc-ref module "callbacks")) -+ ",\n") -+ "\n};\n")) -+ -+ (define (DeclarationTemplate module) -+ (string-append (string-join (map (lambda (cb) -+ (string-append "extern " -+ (assoc-ref cb "declaration") -+ ";")) -+ (assoc-ref module "callbacks")) -+ "\n") -+ "\n" -+ (if (assoc-ref module "initialize") -+ (string-append "extern " (assoc-ref (assoc-ref module "initialize") "declaration") ";\n") -+ "") -+ (if (assoc-ref module "cleanup") -+ (string-append "extern " (assoc-ref (assoc-ref module "cleanup") "declaration") ";\n") -+ ""))) -+ -+ (define (InfoTemplate module) -+ (string-append " -+ { -+ \"" (assoc-ref module "clean-name") "\", -+ " (render-callback (assoc-ref module "initialize")) ", -+ " (render-callback (assoc-ref module "cleanup")) ", -+ _clar_cb_" (assoc-ref module "name") ", " -+ (number->string (length (assoc-ref module "callbacks"))) -+ ", " (assoc-ref module "enabled") " -+ }")) -+ -+ (define (Write data) -+ (define (name< module-a module-b) -+ (stringstring (suite-count))) -+ (callback-count-str (number->string (callback-count)))) -+ (display-x "static const size_t _clar_suite_count = ") -+ (display-x suite-count-str) -+ (display-x ";\n") -+ -+ (display-x "static const size_t _clar_callback_count = ") -+ (display-x callback-count-str) -+ (display-x ";\n") -+ -+ (display (string-append "Written `clar.suite` (" -+ callback-count-str -+ " tests in " -+ suite-count-str -+ " suites)")) -+ (newline)) -+ #t) -+ -+ (call-with-output-file (string-append output "/clar.suite") Write)) -+ -+;;; main -+ -+(define (main) -+ (define option-spec -+ '((force (single-char #\f) (value #f)) -+ (exclude (single-char #\x) (value #t)) -+ (output (single-char #\o) (value #t)) -+ (help (single-char #\h) (value #f)))) -+ -+ (define options (getopt-long (command-line) option-spec #:stop-at-first-non-option #t)) -+ (define args (reverse (option-ref options '() '()))) -+ (when (> (length args) 1) -+ (display "More than one path given\n") -+ (exit 1)) -+ -+ (if (< (length args) 1) -+ (set! args '("."))) -+ -+ (let* ((path (car args)) -+ (output (option-ref options 'output path)) -+ (excluded (filter-map (match-lambda -+ (('exclude . value) value) -+ (_ #f)) -+ options))) -+ (generate-TestSuite path output excluded))) -+ -+(main) -- cgit v1.2.3 From c2d7e800e6788277bc56f31d5836f9d507dc1506 Mon Sep 17 00:00:00 2001 From: Marius Bakke Date: Wed, 4 Mar 2020 13:07:14 +0100 Subject: gnu: ceph: Update to 14.2.8. * gnu/packages/patches/ceph-boost-compat.patch, gnu/packages/patches/ceph-volume-respect-PATH.patch: Delete files. * gnu/local.mk (dist_patch_DATA): Adjust accordingly. * gnu/packages/storage.scm (ceph): Update to 14.2.8. [source](patches): Remove obsolete. --- gnu/packages/patches/ceph-boost-compat.patch | 81 ---------------------- .../patches/ceph-volume-respect-PATH.patch | 22 ------ 2 files changed, 103 deletions(-) delete mode 100644 gnu/packages/patches/ceph-boost-compat.patch delete mode 100644 gnu/packages/patches/ceph-volume-respect-PATH.patch (limited to 'gnu/packages/patches') diff --git a/gnu/packages/patches/ceph-boost-compat.patch b/gnu/packages/patches/ceph-boost-compat.patch deleted file mode 100644 index b3df659d6b..0000000000 --- a/gnu/packages/patches/ceph-boost-compat.patch +++ /dev/null @@ -1,81 +0,0 @@ -Fix compatibility with Boost 1.70. - -Adapted for 14.2.5 from these upstream commits: -https://github.com/ceph/ceph/commit/064f142746ae97f54865069cdacf5aae2b1b14f6 -https://github.com/ceph/ceph/commit/f1651b8c509d60787d10c4115e29fecfd2da237c - -diff --git a/src/rgw/rgw_asio_frontend.cc b/src/rgw/rgw_asio_frontend.cc ---- a/src/rgw/rgw_asio_frontend.cc -+++ b/src/rgw/rgw_asio_frontend.cc -@@ -83,7 +83,8 @@ - using SharedMutex = ceph::async::SharedMutex; - - template --void handle_connection(RGWProcessEnv& env, Stream& stream, -+void handle_connection(boost::asio::io_context& context, -+ RGWProcessEnv& env, Stream& stream, - parse_buffer& buffer, bool is_ssl, - SharedMutex& pause_mutex, - rgw::dmclock::Scheduler *scheduler, -@@ -160,7 +161,7 @@ - rgw::io::add_conlen_controlling( - &real_client)))); - RGWRestfulIO client(cct, &real_client_io); -- auto y = optional_yield{socket.get_io_context(), yield}; -+ auto y = optional_yield{context, yield}; - process_request(env.store, env.rest, &req, env.uri_prefix, - *env.auth_registry, &client, env.olog, y, scheduler); - } -@@ -604,7 +605,7 @@ - return; - } - buffer->consume(bytes); -- handle_connection(env, stream, *buffer, true, pause_mutex, -+ handle_connection(context, env, stream, *buffer, true, pause_mutex, - scheduler.get(), ec, yield); - if (!ec) { - // ssl shutdown (ignoring errors) -@@ -622,7 +623,7 @@ - auto c = connections.add(conn); - auto buffer = std::make_unique(); - boost::system::error_code ec; -- handle_connection(env, s, *buffer, false, pause_mutex, -+ handle_connection(context, env, s, *buffer, false, pause_mutex, - scheduler.get(), ec, yield); - s.shutdown(tcp::socket::shutdown_both, ec); - }); -diff --git a/src/rgw/rgw_dmclock_async_scheduler.h b/src/rgw/rgw_dmclock_async_scheduler.h ---- a/src/rgw/rgw_dmclock_async_scheduler.h -+++ b/src/rgw/rgw_dmclock_async_scheduler.h -@@ -82,7 +82,12 @@ class AsyncScheduler : public md_config_obs_t, public Scheduler { - using Completion = async::Completion>; - - using Clock = ceph::coarse_real_clock; -+#if BOOST_VERSION < 107000 - using Timer = boost::asio::basic_waitable_timer; -+#else -+ using Timer = boost::asio::basic_waitable_timer, executor_type>; -+#endif - Timer timer; //< timer for the next scheduled request - - CephContext *const cct; -diff --git a/src/rgw/rgw_reshard.h b/src/rgw/rgw_reshard.h ---- a/src/rgw/rgw_reshard.h -+++ b/src/rgw/rgw_reshard.h -@@ -183,7 +183,14 @@ class RGWReshardWait { - ceph::condition_variable cond; - - struct Waiter : boost::intrusive::list_base_hook<> { -- boost::asio::basic_waitable_timer timer; -+#if BOOST_VERSION < 107000 -+ using Timer = boost::asio::basic_waitable_timer; -+#else -+ using Executor = boost::asio::io_context::executor_type; -+ using Timer = boost::asio::basic_waitable_timer, Executor>; -+#endif -+ Timer timer; - explicit Waiter(boost::asio::io_context& ioc) : timer(ioc) {} - }; - boost::intrusive::list waiters; diff --git a/gnu/packages/patches/ceph-volume-respect-PATH.patch b/gnu/packages/patches/ceph-volume-respect-PATH.patch deleted file mode 100644 index 08a9a15ddd..0000000000 --- a/gnu/packages/patches/ceph-volume-respect-PATH.patch +++ /dev/null @@ -1,22 +0,0 @@ -Look for required tools in $PATH instead of just a handful locations. - -diff --git a/src/ceph-volume/ceph_volume/util/system.py b/src/ceph-volume/ceph_volume/util/system.py -index b637f023a4..14516e1c65 100644 ---- a/src/ceph-volume/ceph_volume/util/system.py -+++ b/src/ceph-volume/ceph_volume/util/system.py -@@ -33,14 +33,7 @@ def generate_uuid(): - - def which(executable): - """find the location of an executable""" -- locations = ( -- '/usr/local/bin', -- '/bin', -- '/usr/bin', -- '/usr/local/sbin', -- '/usr/sbin', -- '/sbin', -- ) -+ locations = os.getenv('PATH').split(':') - - for location in locations: - executable_path = os.path.join(location, executable) -- cgit v1.2.3 From aac148a87b9a79b9992b8b1a9d76c217175d4a88 Mon Sep 17 00:00:00 2001 From: Felix Gruber Date: Wed, 4 Mar 2020 22:41:08 +0100 Subject: gnu: SuiteSparse: Update to 5.7.1. * gnu/packages/maths.scm (suitesparse): Update to 5.7.1. [source]: The latest releases of SuiteSparse have only been published on GitHub. Fetch from git tag as GitHub releases page only contains autogenerated tarballs that guix lint complains about. Apply new patch for Mongoose's CMakeList.txt to find SuiteSparse_config. [arguments]: Add CMake flags used by new components GraphBLAS and Mongoose. [native-inputs]: Add CMake and m4 needed to build GraphBLAS and Mongoose. * gnu/packages/patches/suitesparse-mongoose-cmake.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. Signed-off-by: Leo Famulari --- .../patches/suitesparse-mongoose-cmake.patch | 27 ++++++++++++++++++++++ 1 file changed, 27 insertions(+) create mode 100644 gnu/packages/patches/suitesparse-mongoose-cmake.patch (limited to 'gnu/packages/patches') diff --git a/gnu/packages/patches/suitesparse-mongoose-cmake.patch b/gnu/packages/patches/suitesparse-mongoose-cmake.patch new file mode 100644 index 0000000000..e5062f9aaa --- /dev/null +++ b/gnu/packages/patches/suitesparse-mongoose-cmake.patch @@ -0,0 +1,27 @@ +Fix required by suitesparse to build Mongoose + +The CMakeLists.txt of Mongoose assumes that SuiteSparse_config has been +installed into the suitesparse source directory, which is not the case +for us, as we are building suitesparse out-of-tree. + +SuiteSparse_config can instead be found in the ${CMAKE_INSTALL_PREFIX} +directory. + +diff --git a/Mongoose/CMakeLists.txt b/Mongoose/CMakeLists.txt +index 7e134ab..76fa9e2 100644 +--- a/Mongoose/CMakeLists.txt ++++ b/Mongoose/CMakeLists.txt +@@ -148,10 +148,10 @@ set(CMAKE_CXX_STANDARD 11) + #set(CMAKE_CXX_STANDARD_REQUIRED ON) + + # determine which SuiteSparse_config to use +-if (EXISTS ${PROJECT_SOURCE_DIR}/../SuiteSparse_config) +- message(STATUS "External ../SuiteSparse_config" ${BoldBlue} " found" ${ColourReset} ".") ++if (EXISTS ${CMAKE_INSTALL_PREFIX}) ++ message(STATUS "External SuiteSparse_config" ${BoldBlue} " found" ${ColourReset} ".") + set ( SUITESPARSE_CONFIG_DIR ${PROJECT_SOURCE_DIR}/../SuiteSparse_config ) +- link_directories ( ${PROJECT_SOURCE_DIR}/../lib ) ++ link_directories ( ${CMAKE_INSTALL_PREFIX}/lib ) + message ( STATUS "Note: ../SuiteSparse_config must be compiled before compiling Mongoose" ) + set ( SUITESPARSE_CONFIG_LIBRARY suitesparseconfig ) + else () -- cgit v1.2.3