From 7ce7464934aa9ba26b4ec2708c964af7b1d0deb2 Mon Sep 17 00:00:00 2001
From: Julien Lepiller <julien@lepiller.eu>
Date: Sat, 25 Feb 2023 21:30:29 +0100
Subject: gnu: java-guava: Update to 31.1.

* gnu/packages/patches/java-guava-remove-annotation-deps.patch: New
  file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/java.scm (java-guava): Update to 31.1.
[source]: Use patch.
(java-guava-futures-failureaccess): New variable.
* gnu/packages/bioinformatics.scm (java-picard, java-picard-2.10.3): Fix for
  newer guava.
* gnu/packages/maven.scm (maven): Add java-guava-futures-failureaccess.

Change-Id: Id2553c48e11c6001fb45a0589720cef1551804d9
---
 .../java-guava-remove-annotation-deps.patch        | 37 ++++++++++++++++++++++
 1 file changed, 37 insertions(+)
 create mode 100644 gnu/packages/patches/java-guava-remove-annotation-deps.patch

(limited to 'gnu/packages/patches')

diff --git a/gnu/packages/patches/java-guava-remove-annotation-deps.patch b/gnu/packages/patches/java-guava-remove-annotation-deps.patch
new file mode 100644
index 0000000000..6f038b1ba4
--- /dev/null
+++ b/gnu/packages/patches/java-guava-remove-annotation-deps.patch
@@ -0,0 +1,37 @@
+From 41d216ca7993991d32a077d0650ccfad8a846942 Mon Sep 17 00:00:00 2001
+From: Julien Lepiller <julien@lepiller.eu>
+Date: Sat, 25 Feb 2023 10:02:11 +0100
+Subject: [PATCH] Remove annotation dependencies
+
+This is used to prevent a failure when guix creates the Maven directory
+structure and fails to find these dependencies.
+---
+ guava/pom.xml | 12 ------------
+ 1 file changed, 12 deletions(-)
+
+diff --git a/guava/pom.xml b/guava/pom.xml
+index 81a2005..5237047 100644
+--- a/guava/pom.xml
++++ b/guava/pom.xml
+@@ -31,18 +31,6 @@
+       <groupId>com.google.code.findbugs</groupId>
+       <artifactId>jsr305</artifactId>
+     </dependency>
+-    <dependency>
+-      <groupId>org.checkerframework</groupId>
+-      <artifactId>checker-qual</artifactId>
+-    </dependency>
+-    <dependency>
+-      <groupId>com.google.errorprone</groupId>
+-      <artifactId>error_prone_annotations</artifactId>
+-    </dependency>
+-    <dependency>
+-      <groupId>com.google.j2objc</groupId>
+-      <artifactId>j2objc-annotations</artifactId>
+-    </dependency>
+     <!-- TODO(cpovirk): does this comment belong on the <dependency> in <profiles>? -->
+     <!-- TODO(cpovirk): want this only for dependency plugin but seems not to work there? Maven runs without failure, but the resulting Javadoc is missing the hoped-for inherited text -->
+   </dependencies>
+-- 
+2.38.1
+
-- 
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