From f4d920b9f7ac404b245693fe21b39b7c41a49a61 Mon Sep 17 00:00:00 2001 From: zimoun Date: Mon, 14 Sep 2020 18:07:36 +0200 Subject: gnu: r-fourcseq: Move to (gnu packages bioconductor). * gnu/packages/cran.scm (r-fourcseq): Move from here... * gnu/packages/bioconductor.scm (r-fourcseq): ...to here. Signed-off-by: Ricardo Wurmus --- gnu/packages/cran.scm | 44 -------------------------------------------- 1 file changed, 44 deletions(-) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index a39c0e64cb..5169800fef 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -22575,50 +22575,6 @@ (define-public r-lsd ;; Either version (license (list license:gpl2 license:gpl3)))) -(define-public r-fourcseq - (package - (name "r-fourcseq") - (version "1.22.1") - (source - (origin - (method url-fetch) - (uri (bioconductor-uri "FourCSeq" version)) - (sha256 - (base32 "14q1ijnqnbd9xs60sfvyqjfiypjrvhacpwp2v85yfhcxw870cx5b")))) - (properties `((upstream-name . "FourCSeq"))) - (build-system r-build-system) - (propagated-inputs - `(("r-biobase" ,r-biobase) - ("r-biostrings" ,r-biostrings) - ("r-deseq2" ,r-deseq2) - ("r-fda" ,r-fda) - ("r-genomicalignments" ,r-genomicalignments) - ("r-genomicranges" ,r-genomicranges) - ("r-ggbio" ,r-ggbio) - ("r-ggplot2" ,r-ggplot2) - ("r-gtools" ,r-gtools) - ("r-lsd" ,r-lsd) - ("r-matrix" ,r-matrix) - ("r-reshape2" ,r-reshape2) - ("r-rsamtools" ,r-rsamtools) - ("r-rtracklayer" ,r-rtracklayer) - ("r-summarizedexperiment" ,r-summarizedexperiment))) - (native-inputs - `(("r-knitr" ,r-knitr))) - (home-page - "https://bioconductor.org/packages/release/bioc/html/FourCSeq.html") - (synopsis "Analysis of multiplexed 4C sequencing data") - (description - "This package is an R package dedicated to the analysis of (multiplexed) -4C sequencing data. @code{r-fourcseq} provides a pipeline to detect specific -interactions between DNA elements and identify differential interactions -between conditions. The statistical analysis in R starts with individual bam -files for each sample as inputs. To obtain these files, the package contains -a Python script to demultiplex libraries and trim off primer sequences. With -a standard alignment software the required bam files can be then be -generated.") - (license license:gpl3+))) - (define-public r-phylogram (package (name "r-phylogram") -- cgit v1.2.3 From 3159fcf14519f02c79ad84b441985982cb1efeb9 Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Mon, 14 Sep 2020 21:37:22 +0200 Subject: gnu: r-wgcna: Move to (gnu packages bioconductor). This is a follow-up to commit 6e0ab26f31cd2bb7e5d88719d3d458df68c1963e. * gnu/packages/cran.scm (r-wgcna): Move from here... * gnu/packages/bioconductor.scm (r-wgcna): ...to here. --- gnu/packages/bioconductor.scm | 40 ++++++++++++++++++++++++++++++++++++++++ gnu/packages/cran.scm | 38 -------------------------------------- 2 files changed, 40 insertions(+), 38 deletions(-) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index f52025da91..9d5c69e45e 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -8310,6 +8310,46 @@ (define-public r-preprocesscore routines.") (license license:lgpl2.0+))) +;; This is a CRAN package, but it depends on preprocessorcore, which is a +;; Bioconductor package. +(define-public r-wgcna + (package + (name "r-wgcna") + (version "1.69") + (source + (origin + (method url-fetch) + (uri (cran-uri "WGCNA" version)) + (sha256 + (base32 + "022hkprnrafvggi8pkjffkvk1qlnibmbbxxrni00wkrdbga5589f")))) + (properties `((upstream-name . "WGCNA"))) + (build-system r-build-system) + (propagated-inputs + `(("r-annotationdbi" ,r-annotationdbi) + ("r-doparallel" ,r-doparallel) + ("r-dynamictreecut" ,r-dynamictreecut) + ("r-fastcluster" ,r-fastcluster) + ("r-foreach" ,r-foreach) + ("r-go-db" ,r-go-db) + ("r-hmisc" ,r-hmisc) + ("r-impute" ,r-impute) + ("r-rcpp" ,r-rcpp) + ("r-survival" ,r-survival) + ("r-matrixstats" ,r-matrixstats) + ("r-preprocesscore" ,r-preprocesscore))) + (home-page + "http://www.genetics.ucla.edu/labs/horvath/CoexpressionNetwork/Rpackages/WGCNA/") + (synopsis "Weighted correlation network analysis") + (description + "This package provides functions necessary to perform Weighted +Correlation Network Analysis on high-dimensional data. It includes functions +for rudimentary data cleaning, construction and summarization of correlation +networks, module identification and functions for relating both variables and +modules to sample traits. It also includes a number of utility functions for +data manipulation and visualization.") + (license license:gpl2+))) + (define-public r-rgraphviz (package (name "r-rgraphviz") diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 5169800fef..684244456b 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -14477,44 +14477,6 @@ (define-public r-optparse that accept short and long options.") (license license:gpl2+))) -(define-public r-wgcna - (package - (name "r-wgcna") - (version "1.69") - (source - (origin - (method url-fetch) - (uri (cran-uri "WGCNA" version)) - (sha256 - (base32 - "022hkprnrafvggi8pkjffkvk1qlnibmbbxxrni00wkrdbga5589f")))) - (properties `((upstream-name . "WGCNA"))) - (build-system r-build-system) - (propagated-inputs - `(("r-annotationdbi" ,r-annotationdbi) - ("r-doparallel" ,r-doparallel) - ("r-dynamictreecut" ,r-dynamictreecut) - ("r-fastcluster" ,r-fastcluster) - ("r-foreach" ,r-foreach) - ("r-go-db" ,r-go-db) - ("r-hmisc" ,r-hmisc) - ("r-impute" ,r-impute) - ("r-rcpp" ,r-rcpp) - ("r-survival" ,r-survival) - ("r-matrixstats" ,r-matrixstats) - ("r-preprocesscore" ,r-preprocesscore))) - (home-page - "http://www.genetics.ucla.edu/labs/horvath/CoexpressionNetwork/Rpackages/WGCNA/") - (synopsis "Weighted correlation network analysis") - (description - "This package provides functions necessary to perform Weighted -Correlation Network Analysis on high-dimensional data. It includes functions -for rudimentary data cleaning, construction and summarization of correlation -networks, module identification and functions for relating both variables and -modules to sample traits. It also includes a number of utility functions for -data manipulation and visualization.") - (license license:gpl2+))) - (define-public r-kernlab (package (name "r-kernlab") -- cgit v1.2.3 From 7230f6d5dda8d1351d16c786c0f86eca55aca09a Mon Sep 17 00:00:00 2001 From: Tobias Geerinckx-Rice Date: Tue, 22 Sep 2020 21:31:52 +0200 Subject: gnu: Fix typoes in package descriptions. * gnu/packages/audio.scm (caps-plugins-lv2)[synopsis]: Fix typo. * gnu/packages/bioconductor.scm (r-karyoploter, r-anota, r-gcrma) (r-bigmemoryextras)[description]: Likewise. * gnu/packages/cran.scm (r-geometry)[synopsis]: Likewise. (r-stringdist, r-patchwork, r-depth, r-tea)[description]: Likewise. * gnu/packages/crates-io.scm (rust-assert-fs-0.11, rust-notify-4) (rust-tokio-fs-0.1)[synopsis, description]: Likewise. (rust-blas-sys-0.7)[description]: Likewise. (rust-fs-extra-1.1, rust-xattr-0.2)[synopsis]: Likewise. * gnu/packages/databases.scm (perl-mysql-config)[description]: Likewise. * gnu/packages/disk.scm (hddtemp)[description]: Likewise. * gnu/packages/django.scm (python-djangorestframework)[description]: Likewise. * gnu/packages/documentation.scm (doc++)[description]: Likewise. * gnu/packages/emacs-xyz.scm (emacs-kakoune, emacs-pyim-basedict, eless) (emacs-scpaste)[description]: Likewise. * gnu/packages/file-systems.scm (dbxfs)[description]: Likewise. * gnu/packages/finance.scm (python-stdnum)[description]: Likewise. * gnu/packages/fontutils.scm (woff2)[description]: Likewise. * gnu/packages/games.scm (openttd-opengfx)[description]: Likewise. * gnu/packages/gnome-xyz.scm (gnome-shell-extension-topicons-redux) [description]: Likewise. * gnu/packages/gnome.scm (libgrss)[description]: Likewise. * gnu/packages/golang.scm (go-github-com-mitchellh-reflectwalk) [description]: Likewise. (go-github-com-go-git-go-billy)[synopsis, description]: Likewise. * gnu/packages/haskell-check.scm (ghc-inspection-testing)[description]: Likewise. * gnu/packages/haskell-web.scm (ghc-yesod-form)[description]: Likewise. * gnu/packages/haskell-xyz.scm (ghc-hex)[description]: Likewise. * gnu/packages/hyperledger.scm (hyperledger-iroha-ed25519)[description]: Likewise. * gnu/packages/java.scm (java-mail)[synopsis]: Likewise. (java-native-access-platform)[description]: Likewise. * gnu/packages/kde-frameworks.scm (kactivities-stats)[description]: Likewise. * gnu/packages/kde-utils.scm (krusader)[description]: Likewise. * gnu/packages/language.scm (praat)[description]: Likewise. * gnu/packages/linux.scm (light)[description]: Likewise. * gnu/packages/lisp-xyz.scm (sbcl-hu.dwim.defclass-star)[description]: Likewise. * gnu/packages/mail.scm (dovecot-trees, sieve-connect)[description]: Likewise. * gnu/packages/ocaml.scm (ocaml-opam-file-format, ocaml-cppo) (ocaml4.07-ppx-variants-conv)[description]: Likewise. * gnu/packages/perl.scm (perl-convert-binhex)[description]: Likewise. * gnu/packages/python-crypto.scm (python-ecdsa)[description]: Likewise. * gnu/packages/python-web.scm (python-html5lib)[synopsis, description]: Likewise. (python-venusian)[synopsis]: Likewise. * gnu/packages/python-xyz.scm (python-readlike, python-gssapi) (python-flufl-i18n)[description]: Likewise. (python-pox, python-watchdog, python-xattr)[synopsis, description]: Likewise. * gnu/packages/ruby.scm (ruby-sorcerer)[description]: Likewise. * gnu/packages/rust-apps.scm (watchexec)[description]: Likewise. * gnu/packages/rust.scm (mrustc)[synopsis]: Likewise. * gnu/packages/shells.scm (s-shell)[description]: Likewise. * gnu/packages/ssh.scm (sshpass)[description]: Likewise. * gnu/packages/terminals.scm (beep)[description]: Likewise. * gnu/packages/web.scm (perl-lwp-useragent-cached)[description]: Likewise. * gnu/packages/wv.scm (wv)[description]: Likewise. --- gnu/packages/audio.scm | 2 +- gnu/packages/bioconductor.scm | 8 ++++---- gnu/packages/cran.scm | 10 +++++----- gnu/packages/crates-io.scm | 18 +++++++++--------- gnu/packages/databases.scm | 2 +- gnu/packages/disk.scm | 2 +- gnu/packages/django.scm | 2 +- gnu/packages/documentation.scm | 2 +- gnu/packages/emacs-xyz.scm | 8 ++++---- gnu/packages/file-systems.scm | 2 +- gnu/packages/finance.scm | 2 +- gnu/packages/fontutils.scm | 2 +- gnu/packages/games.scm | 2 +- gnu/packages/gnome-xyz.scm | 2 +- gnu/packages/gnome.scm | 4 ++-- gnu/packages/golang.scm | 12 ++++++------ gnu/packages/haskell-check.scm | 2 +- gnu/packages/haskell-web.scm | 2 +- gnu/packages/haskell-xyz.scm | 4 ++-- gnu/packages/hyperledger.scm | 2 +- gnu/packages/java.scm | 4 ++-- gnu/packages/kde-frameworks.scm | 2 +- gnu/packages/kde-utils.scm | 2 +- gnu/packages/language.scm | 4 ++-- gnu/packages/linux.scm | 6 ++---- gnu/packages/lisp-xyz.scm | 2 +- gnu/packages/mail.scm | 4 ++-- gnu/packages/ocaml.scm | 8 ++++---- gnu/packages/perl.scm | 2 +- gnu/packages/python-crypto.scm | 2 +- gnu/packages/python-web.scm | 6 +++--- gnu/packages/python-xyz.scm | 24 ++++++++++++------------ gnu/packages/ruby.scm | 4 ++-- gnu/packages/rust-apps.scm | 2 +- gnu/packages/rust.scm | 2 +- gnu/packages/shells.scm | 5 +++-- gnu/packages/ssh.scm | 2 +- gnu/packages/terminals.scm | 2 +- gnu/packages/web.scm | 2 +- gnu/packages/wv.scm | 2 +- 40 files changed, 88 insertions(+), 89 deletions(-) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/audio.scm b/gnu/packages/audio.scm index c6734a35f3..f26b3eceae 100644 --- a/gnu/packages/audio.scm +++ b/gnu/packages/audio.scm @@ -1046,7 +1046,7 @@ (define-public caps-plugins-lv2 `(("lv2" ,lv2))) ;; home-page of the original LADSPA version: http://quitte.de/dsp/caps.html (home-page "https://github.com/moddevices/caps-lv2") - (synopsis "LV2 port of the CAPS audio plugin colection") + (synopsis "LV2 port of the CAPS audio plugin collection") (description "LV2 port of CAPS, a collection of audio plugins comprising basic virtual guitar amplification and a small range of classic effects, signal processors and diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index 9d5c69e45e..d655253cf1 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -2736,7 +2736,7 @@ (define-public r-karyoploter (home-page "https://bioconductor.org/packages/karyoploteR/") (synopsis "Plot customizable linear genomes displaying arbitrary data") (description "This package creates karyotype plots of arbitrary genomes and -offers a complete set of functions to plot arbitrary data on them. It mimicks +offers a complete set of functions to plot arbitrary data on them. It mimics many R base graphics functions coupling them with a coordinate change function automatically mapping the chromosome and data coordinates into the plot coordinates.") @@ -3674,7 +3674,7 @@ (define-public r-anota (description "Genome wide studies of translational control is emerging as a tool to study various biological conditions. The output from such analysis is both -the mRNA level (e.g. cytosolic mRNA level) and the levl of mRNA actively +the mRNA level (e.g. cytosolic mRNA level) and the level of mRNA actively involved in translation (the actively translating mRNA level) for each mRNA. The standard analysis of such data strives towards identifying differential translational between two or more sample classes - i.e. differences in @@ -4843,7 +4843,7 @@ (define-public r-gcrma G or C) at each position along the probe determine the affinity of each probe. The parameters of the position-specific base contributions to the probe affinity is estimated in an NSB experiment in which only NSB but no -gene-specific bidning is expected.") +gene-specific binding is expected.") ;; Any version of the LGPL (license license:lgpl2.1+))) @@ -7478,7 +7478,7 @@ (define-public r-bigmemoryextras safety and convenience features to the @code{filebacked.big.matrix} class from the @code{bigmemory} package. @code{BigMatrix} protects against segfaults by monitoring and gracefully restoring the connection to on-disk data and it also -protects against accidental data modification with a filesystem-based +protects against accidental data modification with a file-system-based permissions system. Utilities are provided for using @code{BigMatrix}-derived classes as @code{assayData} matrices within the @code{Biobase} package's @code{eSet} family of classes. @code{BigMatrix} provides some optimizations diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 684244456b..50ce111123 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -3401,7 +3401,7 @@ (define-public r-geometry ("r-rcpp" ,r-rcpp) ("r-rcppprogress" ,r-rcppprogress))) (home-page "http://geometry.r-forge.r-project.org/") - (synopsis "Mesh generation and surface tesselation") + (synopsis "Mesh generator and surface tessellator") (description "This package makes the qhull library available in R, in a similar manner as in Octave. Qhull computes convex hulls, Delaunay triangulations, halfspace @@ -3743,7 +3743,7 @@ (define-public r-stringdist (description "This package implements an approximate string matching version of R's native @code{match} function. It can calculate various string distances based -on edits (Damerau-Levenshtein, Hamming, Levenshtein, optimal sting alignment), +on edits (Damerau-Levenshtein, Hamming, Levenshtein, optimal string alignment), qgrams (q- gram, cosine, jaccard distance) or heuristic metrics (Jaro, Jaro-Winkler). An implementation of soundex is provided as well. Distances can be computed between character vectors while taking proper care of encoding @@ -16497,7 +16497,7 @@ (define-public r-patchwork "The @code{ggplot2} package provides a strong API for sequentially building up a plot, but does not concern itself with composition of multiple plots. Patchwork is a package that expands the API to allow for arbitrarily -complex composition of plots by providing mathmatical operators for combining +complex composition of plots by providing mathematical operators for combining multiple plots.") (license license:expat))) @@ -19616,7 +19616,7 @@ (define-public r-depth "This package provides tools for depth functions methodology applied to multivariate analysis. Besides allowing calculation of depth values and depth-based location estimators, the package includes functions or drawing -contour plots and perspective plots of depth functions. Euclidian and +contour plots and perspective plots of depth functions. Euclidean and spherical depths are supported.") (license license:gpl2))) @@ -22103,7 +22103,7 @@ (define-public r-tea (description "This package provides different approaches for selecting the threshold in generalized Pareto distributions. Most of them are based on minimizing the -AMSE-criterion or atleast by reducing the bias of the assumed GPD-model. +AMSE-criterion or at least by reducing the bias of the assumed GPD-model. Others are heuristically motivated by searching for stable sample paths, i.e. a nearly constant region of the tail index estimator with respect to k, which is the number of data in the tail. The third class is motivated by graphical diff --git a/gnu/packages/crates-io.scm b/gnu/packages/crates-io.scm index ba02406848..96b47394a6 100644 --- a/gnu/packages/crates-io.scm +++ b/gnu/packages/crates-io.scm @@ -984,9 +984,9 @@ (define-public rust-assert-fs-0.11 #:cargo-development-inputs (("rust-docmatic" ,rust-docmatic-0.1)))) (home-page "https://github.com/assert-rs/assert_fs") - (synopsis "Filesystem fixtures and assertions for testing") + (synopsis "File system fixtures and assertions for testing") (description - "Filesystem fixtures and assertions for testing.") + "File system fixtures and assertions for testing.") (license (list license:expat license:asl2.0)))) (define-public rust-assert-matches-1.3 @@ -1977,7 +1977,7 @@ (define-public rust-blas-sys-0.7 (home-page "https://github.com/blas-lapack-rs/blas-sys") (synopsis "Bindings to BLAS (Fortran)") (description - "Ths package provides bindings to BLAS (Fortran).") + "This package provides bindings to BLAS (Fortran).") (license (list license:asl2.0 license:expat)))) @@ -7945,7 +7945,7 @@ (define-public rust-fs-extra-1.1 (build-system cargo-build-system) (arguments '(#:skip-build? #t)) (home-page "https://github.com/webdesus/fs_extra") - (synopsis "Extra filesystem methods") + (synopsis "Extra file system methods") (description "Expanding opportunities standard library @code{std::fs} and @code{std::io}. Recursively copy folders with recept information about process and much more.") @@ -15245,9 +15245,9 @@ (define-public rust-notify-4 #:cargo-development-inputs (("rust-tempfile" ,rust-tempfile-3)))) (home-page "https://github.com/passcod/notify") - (synopsis "Cross-platform filesystem notification library") + (synopsis "Cross-platform file system notification library") (description - "Cross-platform filesystem notification library.") + "Cross-platform file system notification library.") (license license:cc0))) (define-public rust-num-0.2 @@ -27178,8 +27178,8 @@ (define-public rust-tokio-fs-0.1 ("rust-tokio-codec" ,rust-tokio-codec-0.1) ("rust-tokio-io" ,rust-tokio-io-0.1)))) (home-page "https://tokio.rs") - (synopsis "Filesystem API for Tokio") - (description "Filesystem API for Tokio.") + (synopsis "File system API for Tokio") + (description "File system API for Tokio.") (license license:expat))) ;; Cyclic dependencies with tokio and tokio-current-thread @@ -30508,7 +30508,7 @@ (define-public rust-xattr-0.2 #:cargo-development-inputs (("rust-tempfile" ,rust-tempfile-3)))) (home-page "https://github.com/Stebalien/xattr") - (synopsis "Unix extended filesystem attributes") + (synopsis "Unix extended file system attributes") (description "This package provide a small library for setting, getting, and listing extended attributes.") diff --git a/gnu/packages/databases.scm b/gnu/packages/databases.scm index a9798cbc33..c86297b293 100644 --- a/gnu/packages/databases.scm +++ b/gnu/packages/databases.scm @@ -1780,7 +1780,7 @@ (define-public perl-mysql-config (synopsis "Parse and utilize MySQL's /etc/my.cnf and ~/.my.cnf files") (description "@code{MySQL::Config} emulates the @code{load_defaults} function from -libmysqlclient. It will fill an aray with long options, ready to be parsed by +libmysqlclient. It will fill an array with long options, ready to be parsed by @code{Getopt::Long}.") (license license:perl-license))) diff --git a/gnu/packages/disk.scm b/gnu/packages/disk.scm index 79e187e283..1e538ef60e 100644 --- a/gnu/packages/disk.scm +++ b/gnu/packages/disk.scm @@ -1038,6 +1038,6 @@ (define-public hddtemp (home-page "https://savannah.nongnu.org/projects/hddtemp/") (synopsis "Report the temperature of hard drives from S.M.A.R.T. information") (description "@command{hddtemp} is a small utility that gives you the -temperature of your hard drive by reading S.M.A.R.T. informations (for drives +temperature of your hard drive by reading S.M.A.R.T. information (for drives that support this feature).") (license license:gpl2+))) diff --git a/gnu/packages/django.scm b/gnu/packages/django.scm index 3fee18a102..43339720f2 100644 --- a/gnu/packages/django.scm +++ b/gnu/packages/django.scm @@ -1029,7 +1029,7 @@ (define-public python-djangorestframework (synopsis "Toolkit for building Web APIs with Django") (description "The Django REST framework is for building Web APIs with Django. It -provides features like a web browseable API and authentication policies.") +provides features like a Web-browsable API and authentication policies.") (license license:bsd-2))) (define-public python-django-sekizai diff --git a/gnu/packages/documentation.scm b/gnu/packages/documentation.scm index 9c30fc832a..6532bb4704 100644 --- a/gnu/packages/documentation.scm +++ b/gnu/packages/documentation.scm @@ -273,7 +273,7 @@ (define-public doc++ (description "DOC++ is a documentation system for C, C++, IDL, and Java. It can generate both TeX output for high-quality hardcopies or HTML output for online -brwosing. The documentation is extracted directly from the C/C++/IDL source +browsing. The documentation is extracted directly from the C/C++/IDL source or Java class files.") (license gpl2+))) diff --git a/gnu/packages/emacs-xyz.scm b/gnu/packages/emacs-xyz.scm index 43add530af..2957641c14 100644 --- a/gnu/packages/emacs-xyz.scm +++ b/gnu/packages/emacs-xyz.scm @@ -2800,7 +2800,7 @@ (define-public emacs-kakoune (description "This package provides many, but not all of the editing primitives in the Kakoune editor. Unlike Evil mode for Vim, this is a very shallow emulation, which seeks to do as little work as possible, leveraging -Emacs native editing commmands and the work of other packages wherever +Emacs native editing commands and the work of other packages wherever possible.") (license license:expat)))) @@ -11105,7 +11105,7 @@ (define-public emacs-pyim-basedict (home-page "https://github.com/tumashu/pyim-basedict") (synopsis "Input method dictionary of pyim") (description "Pyim-basedict is the default pinyin input method dictionary, -containing words from the rime project.") +containing words from the Rime project.") (license license:gpl2+))) (define-public emacs-pyim @@ -12974,7 +12974,7 @@ (define-public eless (description "@code{eless} provides a combination of Bash script and a minimal Emacs view-mode. -Feautures: +Features: @itemize @item Independent of a user’s Emacs config. @@ -24633,7 +24633,7 @@ (define-public emacs-scpaste buffer on an active webserver to which the user has SSH access. It is similar in purpose to services such as Gist or Pastebin, but is much simpler since it assumes the user has access to a -publically-accessible HTTP server.") +publicly-accessible HTTP server.") (license license:gpl3+)))) (define-public emacs-company-reftex diff --git a/gnu/packages/file-systems.scm b/gnu/packages/file-systems.scm index b8612ac3b2..046deb67ab 100644 --- a/gnu/packages/file-systems.scm +++ b/gnu/packages/file-systems.scm @@ -917,5 +917,5 @@ (define-public dbxfs (synopsis "User-space file system for Dropbox") (description "@code{dbxfs} allows you to mount your Dropbox folder as if it were a -local filesystem using FUSE.") +local file system using FUSE.") (license license:gpl3+))) diff --git a/gnu/packages/finance.scm b/gnu/packages/finance.scm index de3b687410..863914bd35 100644 --- a/gnu/packages/finance.scm +++ b/gnu/packages/finance.scm @@ -1061,7 +1061,7 @@ (define-public python-stdnum personal identity and company identification codes, international standard numbers (ISBN, IBAN, EAN, etc.) and various other formats. -The module also inclused implementations of the Verhoeff, +The module also includes implementations of the Verhoeff, Luhn and family of ISO/IEC 7064 check digit algorithms. ") (license license:lgpl2.1+))) diff --git a/gnu/packages/fontutils.scm b/gnu/packages/fontutils.scm index 96557b963c..94473991f7 100644 --- a/gnu/packages/fontutils.scm +++ b/gnu/packages/fontutils.scm @@ -303,7 +303,7 @@ (define-public woff2 (inputs `(("brotli" ,google-brotli))) (synopsis "Libraries and tools for WOFF2 font format") - (description "WOFF2 provides libraires and tools to handle the Web Open + (description "WOFF2 provides libraries and tools to handle the Web Open Font Format (WOFF).") (home-page "https://w3c.github.io/woff/woff2/") (license license:expat))) diff --git a/gnu/packages/games.scm b/gnu/packages/games.scm index d54a3bd1a9..b819cd104f 100644 --- a/gnu/packages/games.scm +++ b/gnu/packages/games.scm @@ -3903,7 +3903,7 @@ (define openttd-opengfx (home-page "http://dev.openttdcoop.org/projects/opengfx") (synopsis "Base graphics set for OpenTTD") (description - "The OpenGFX projects is an implementation of the OpenTTD base grahics + "The OpenGFX project is an implementation of the OpenTTD base graphics set that aims to ensure the best possible out-of-the-box experience. OpenGFX provides you with... diff --git a/gnu/packages/gnome-xyz.scm b/gnu/packages/gnome-xyz.scm index 75ba0f5636..7f3ae41d17 100644 --- a/gnu/packages/gnome-xyz.scm +++ b/gnu/packages/gnome-xyz.scm @@ -234,7 +234,7 @@ (define-public gnome-shell-extension-topicons-redux close their window. These applications remain accessible by adding an icon to the GNOME Shell Legacy Tray. However, the Legacy Tray was removed in GNOME 3.26. TopIcons Redux brings those icons back into the top panel so that it's -easier to keep track of apps running in the backround.") +easier to keep track of applications running in the background.") (license license:gpl2+))) (define-public gnome-shell-extension-dash-to-dock diff --git a/gnu/packages/gnome.scm b/gnu/packages/gnome.scm index d727f18ed8..762e48f572 100644 --- a/gnu/packages/gnome.scm +++ b/gnu/packages/gnome.scm @@ -357,8 +357,8 @@ (define-public libgrss ("libsoup" ,libsoup) ("libxml2" ,libxml2))) (synopsis "Glib library for feeds") - (description "LibGRSS is a Glib abstaction to handle feeds in RSS, Atom and -other formats.") + (description "LibGRSS is a Glib abstraction to handle feeds in RSS, Atom, +and other formats.") (home-page "https://wiki.gnome.org/Projects/Libgrss") (license license:lgpl3+))) diff --git a/gnu/packages/golang.scm b/gnu/packages/golang.scm index 8723592b51..001c864505 100644 --- a/gnu/packages/golang.scm +++ b/gnu/packages/golang.scm @@ -2822,7 +2822,7 @@ (define-public go-github-com-mitchellh-reflectwalk (synopsis "Walk a value in Go using reflection") (description "reflectwalk is a Go library for \"walking\" a value in Go using reflection, in the same way a directory tree can be \"walked\" on the -filesystem. Walking a complex structure can allow you to do manipulations on +file system. Walking a complex structure can allow you to do manipulations on unknown structures such as those decoded from JSON.") (license license:expat))) @@ -5237,11 +5237,11 @@ (define-public go-github-com-go-git-go-billy (native-inputs `(("go-gopkg-in-check-v1" ,go-gopkg-in-check-v1))) (home-page "https://github.com/go-git/go-billy/") - (synopsis "Filesystem abstraction for Go") - (description "Billy implements an interface based on the os standard -library, allowing to develop applications without dependency on the underlying -storage. Makes it virtually free to implement mocks and testing over -filesystem operations.") + (synopsis "File system abstraction for Go") + (description "Billy implements an interface based on the OS's standard +library to develop applications without depending on the underlying storage. +This makes it virtually free to implement mocks and testing over +file system operations.") (license license:asl2.0))) (define-public go-github-com-jbenet-go-context diff --git a/gnu/packages/haskell-check.scm b/gnu/packages/haskell-check.scm index 7f7bc22da5..b5546f97f8 100644 --- a/gnu/packages/haskell-check.scm +++ b/gnu/packages/haskell-check.scm @@ -1033,7 +1033,7 @@ (define-public ghc-inspection-testing This package provides a disciplined way of specifying such properties, and have them checked by the compiler. This way, this checking can be part of the -ususal development cycle and regressions caught early. +regular development cycle and regressions caught early. See the documentation in \"Test.Inspection\" or the project webpage for more examples and more information.") diff --git a/gnu/packages/haskell-web.scm b/gnu/packages/haskell-web.scm index 98d163566c..a4269599f6 100644 --- a/gnu/packages/haskell-web.scm +++ b/gnu/packages/haskell-web.scm @@ -1349,7 +1349,7 @@ (define-public ghc-yesod-form ("ghc-hspec" ,ghc-hspec))) (home-page "https://www.yesodweb.com") (synopsis "Form handling support for Yesod Web Framework") - (description "This Haskell package provies a set of basic form inputs such + (description "This Haskell package provides a set of basic form inputs such as text, number, time, checkbox, select, textarea, etc through the @code{Yesod.Form.Fields} module. Also, there is @code{Yesod.Form.Nic} module providing richtext field using Nic editor. ") diff --git a/gnu/packages/haskell-xyz.scm b/gnu/packages/haskell-xyz.scm index f4af00283c..5b9da15630 100644 --- a/gnu/packages/haskell-xyz.scm +++ b/gnu/packages/haskell-xyz.scm @@ -5524,8 +5524,8 @@ (define-public ghc-hex (build-system haskell-build-system) (home-page "https://hackage.haskell.org/package/hex") (synopsis "Convert strings into hexadecimal and back") - (description "This package provides conversion functions between -bytestrings and their hexademical representation.") + (description "This package converts between bytestrings and their +hexadecimal string representation.") (license license:bsd-3))) (define-public ghc-highlighting-kate diff --git a/gnu/packages/hyperledger.scm b/gnu/packages/hyperledger.scm index c1b8215584..82680cd5e4 100644 --- a/gnu/packages/hyperledger.scm +++ b/gnu/packages/hyperledger.scm @@ -141,7 +141,7 @@ (define-public hyperledger-iroha-ed25519 @itemize @item digital signature algorithm itself @item SHA512 hash function -@item random number generator, to generate keypairs +@item random number generator, to generate key pairs @end itemize This project offers at least two different C implementations for every diff --git a/gnu/packages/java.scm b/gnu/packages/java.scm index 8c594f5fe2..40b0a8c1dd 100644 --- a/gnu/packages/java.scm +++ b/gnu/packages/java.scm @@ -10949,7 +10949,7 @@ (define-public java-mail `(("junit" ,java-junit) ("hamcrest" ,java-hamcrest-core))) (home-page "https://javaee.github.io/javamail/") - (synopsis "Mail-related functionnalities in Java") + (synopsis "Mail-related functionality in Java") (description "The JavaMail API provides a platform-independent and protocol-independent framework to build mail and messaging applications.") ;; General Public License Version 2 only ("GPL") or the Common Development @@ -12226,7 +12226,7 @@ (define-public java-native-access-platform (inputs `(("java-native-access" ,java-native-access))) (synopsis "Cross-platform mappings for jna") - (description "java-native-access-platfrom has cross-platform mappings + (description "java-native-access-platform has cross-platform mappings and mappings for a number of commonly used platform functions, including a large number of Win32 mappings as well as a set of utility classes that simplify native access."))) diff --git a/gnu/packages/kde-frameworks.scm b/gnu/packages/kde-frameworks.scm index d264ca5bbe..c4479de995 100644 --- a/gnu/packages/kde-frameworks.scm +++ b/gnu/packages/kde-frameworks.scm @@ -2215,7 +2215,7 @@ (define-public kactivities-stats (home-page "https://community.kde.org/Frameworks") (synopsis "Access usage statistics collected by the activity manager") (description "The KActivitiesStats library provides a querying mechanism for -the data that the activitiy manager collects - which documents have been opened +the data that the activity manager collects---which documents have been opened by which applications, and what documents have been linked to which activity.") ;; triple licensed (license (list license:lgpl2.0+ license:lgpl2.1+ license:lgpl3+)))) diff --git a/gnu/packages/kde-utils.scm b/gnu/packages/kde-utils.scm index 5e6a872314..4d9f3736c8 100644 --- a/gnu/packages/kde-utils.scm +++ b/gnu/packages/kde-utils.scm @@ -289,7 +289,7 @@ (define-public krusader Total Commander It provides all the file management features you could possibly want. Plus: -extensive archive handling, mounted filesystem support, FTP, advanced search +extensive archive handling, mounted file system support, FTP, advanced search module, an internal viewer/editor, directory synchronisation, file content comparisons, powerful batch renaming and much much more. It supports a wide variety of archive formats and can handle other KIO slaves such as smb or diff --git a/gnu/packages/language.scm b/gnu/packages/language.scm index 0c59cd1bf7..89e5e307eb 100644 --- a/gnu/packages/language.scm +++ b/gnu/packages/language.scm @@ -1100,7 +1100,7 @@ (define-public praat `(("pkg-config" ,pkg-config))) (home-page "http://www.fon.hum.uva.nl/praat/") (synopsis "Doing phonetics by computer") - (description "Praat is a tool to perform phonetics tasks. It can do speach -analysis (pitch, formant, intensity, ...), speach synthesis, labeling, segmenting + (description "Praat is a tool to perform phonetics tasks. It can do speech +analysis (pitch, formant, intensity, ...), speech synthesis, labelling, segmenting and manipulation.") (license gpl2+))) diff --git a/gnu/packages/linux.scm b/gnu/packages/linux.scm index 2c80bda7ce..f443299dfc 100644 --- a/gnu/packages/linux.scm +++ b/gnu/packages/linux.scm @@ -6008,10 +6008,8 @@ (define-public light @item Light can automatically figure out the best controller to use, making full use of underlying hardware. @item It is possible to set a minimum brightness value, as some controllers -set the screen to be pitch black at a vaĺue of 0 (or higher). -@end itemize - -Light is the successor of lightscript.") +set the screen to be pitch black at a value of 0 (or higher). +@end itemize\n") (license license:gpl3+))) (define-public brightnessctl diff --git a/gnu/packages/lisp-xyz.scm b/gnu/packages/lisp-xyz.scm index ef08960497..69ebdb3eb8 100644 --- a/gnu/packages/lisp-xyz.scm +++ b/gnu/packages/lisp-xyz.scm @@ -13656,7 +13656,7 @@ (define-public sbcl-hu.dwim.defclass-star @itemize @item Automatically export all or select slots at compile time. -@item Define the @code{:initarg} and @code{:accesor} automatically. +@item Define the @code{:initarg} and @code{:accessor} automatically. @item Specify a name transformer for both the @code{:initarg} and @code{:accessor}, etc. @item Specify the @code{:initform} as second slot value. diff --git a/gnu/packages/mail.scm b/gnu/packages/mail.scm index fcdefbb577..70e2fcd76b 100644 --- a/gnu/packages/mail.scm +++ b/gnu/packages/mail.scm @@ -1712,7 +1712,7 @@ (define-public dovecot-trees "Technology for Resting Email Encrypted Storage (TREES) is a NaCL-based Dovecot encryption plugin. This plugin adds individually encrypted mail storage to the Dovecot IMAP server. It is inspired by Posteo's scrambler -which uses OpenSSL and RSA keypairs. TREES works in a similar way, but uses +which uses OpenSSL and RSA key pairs. TREES works in a similar way, but uses the Sodium crypto library (based on NaCL). How it works: @@ -2590,7 +2590,7 @@ (define-public sieve-connect (description "Sieve-connect lets you view, upload, edit, delete, and otherwise manage Sieve scripts on any mail server that speaks the @dfn{ManageSieve} protocol, -as specifed in RFC 5804. +as specified in RFC 5804. @dfn{Sieve} (RFC 5228) is a specialised language for e-mail filtering. Sieve scripts are stored on the server and run whenever mail arrives. They can diff --git a/gnu/packages/ocaml.scm b/gnu/packages/ocaml.scm index 33c3fa0494..f92d62691f 100644 --- a/gnu/packages/ocaml.scm +++ b/gnu/packages/ocaml.scm @@ -429,7 +429,7 @@ (define-public ocaml-opam-file-format (home-page "https://opam.ocaml.org") (synopsis "Parser and printer for the opam file syntax") (description "This package contains a parser and a pretty-printer for -the opam file fomat.") +the opam file format.") ;; With static-linking exception (license license:lgpl2.1+))) @@ -2577,9 +2577,9 @@ (define-public ocaml-cppo (home-page "https://github.com/mjambon/cppo") (synopsis "Equivalent of the C preprocessor for OCaml programs") (description "Cppo is an equivalent of the C preprocessor for OCaml -programs. It allows the definition of simple macros and file inclusion. Cpp ois: +programs. It allows the definition of simple macros and file inclusion. Cppo is: @enumerate -@item more OCaml-friendly than cpp +@item more OCaml-friendly than @command{cpp} @item easy to learn without consulting a manual @item reasonably fast @item simple to install and to maintain. @@ -4369,7 +4369,7 @@ (define-public ocaml4.07-ppx-variants-conv "https://github.com/janestreet/ppx_variants_conv") (synopsis "Generation of accessor and iteration functions for OCaml variant types") (description - "This package generates accessors and interation functions for OCaml + "This package generates accessors and iteration functions for OCaml variant types.") (license license:asl2.0))) diff --git a/gnu/packages/perl.scm b/gnu/packages/perl.scm index bd6e746b67..1c3d999d79 100644 --- a/gnu/packages/perl.scm +++ b/gnu/packages/perl.scm @@ -1961,7 +1961,7 @@ (define-public perl-convert-binhex (synopsis "Extract data from Macintosh BinHex files") (description "BinHex is a format for transporting files safely through electronic -mail, as short-lined, 7-bit, semi-compressed data streams. Ths module +mail, as short-lined, 7-bit, semi-compressed data streams. This module provides a means of converting those data streams back into into binary data.") (license license:perl-license))) diff --git a/gnu/packages/python-crypto.scm b/gnu/packages/python-crypto.scm index 22b1a1ebe3..f39695a850 100644 --- a/gnu/packages/python-crypto.scm +++ b/gnu/packages/python-crypto.scm @@ -286,7 +286,7 @@ (define-public python-ecdsa (description "This is an easy-to-use implementation of ECDSA cryptography (Elliptic Curve Digital Signature Algorithm), implemented purely in Python. With this -library, you can quickly create keypairs (signing key and verifying key), sign +library, you can quickly create key pairs (signing key and verifying key), sign messages, and verify the signatures. The keys and signatures are very short, making them easy to handle and incorporate into other protocols.") (license license:expat))) diff --git a/gnu/packages/python-web.scm b/gnu/packages/python-web.scm index c0d0d5662b..aa7d825f2a 100644 --- a/gnu/packages/python-web.scm +++ b/gnu/packages/python-web.scm @@ -730,9 +730,9 @@ (define-public python-html5lib (home-page "https://github.com/html5lib/html5lib-python") (synopsis - "Python HTML parser based on the WHATWG HTML specifcation") + "Python HTML parser based on the WHATWG HTML specification") (description - "Html5lib is an HTML parser based on the WHATWG HTML specifcation + "Html5lib is an HTML parser based on the WHATWG HTML specification and written in Python.") (license license:expat))) @@ -4723,7 +4723,7 @@ (define-public python-venusian ("python-pytest-cov" ,python-pytest-cov))) (arguments '(#:test-target "pytest")) (home-page "https://docs.pylonsproject.org/projects/venusian") - (synopsis "Library for defering decorator actions") + (synopsis "Library for deferring decorator actions") (description "Venusian is a library which allows framework authors to defer decorator actions. Instead of taking actions when a function (or class) decorator is diff --git a/gnu/packages/python-xyz.scm b/gnu/packages/python-xyz.scm index af557fd009..1cd0305fe1 100644 --- a/gnu/packages/python-xyz.scm +++ b/gnu/packages/python-xyz.scm @@ -18940,7 +18940,7 @@ (define-public python-readlike (description "This Python module provides line editing functions similar to the default Emacs-style ones of GNU Readline. Unlike the Python standard library's -@code{readline} package, this one allows access to those capabilties in settings +@code{readline} package, this one allows access to those capabilities in settings outside of a standard command-line interface. It is especially well-suited to interfacing with Urwid, due to a shared syntax for describing key inputs. @@ -20087,11 +20087,11 @@ (define-public python-pox `(("python-pytest" ,python-pytest) ("which" ,which))) (home-page "https://pypi.org/project/pox/") - (synopsis "Python utilities for filesystem exploration and automated builds") + (synopsis "Python utilities for file system exploration and automated builds") (description "Pox provides a collection of utilities for navigating and manipulating -filesystems. This module is designed to facilitate some of the low level -operating system interactions that are useful when exploring a filesystem on a +file systems. This module is designed to facilitate some of the low-level +operating system interactions that are useful when exploring a file system on a remote host. Pox provides Python equivalents of several shell commands such as @command{which} and @command{find}. These commands allow automated discovery of what has been installed on an operating system, and where the @@ -20440,7 +20440,7 @@ (define-public python-gssapi (description "Python-GSSAPI provides both low-level and high level wrappers around the GSSAPI C libraries. While it focuses on the Kerberos mechanism, it should -also be useable with other GSSAPI mechanisms.") +also be usable with other GSSAPI mechanisms.") (license license:isc))) (define-public python-check-manifest @@ -20516,8 +20516,8 @@ (define-public python-watchdog `(("python-pytest-cov" ,python-pytest-cov) ("python-pytest-timeout" ,python-pytest-timeout))) (home-page "https://github.com/gorakhargosh/watchdog") - (synopsis "Filesystem events monitoring") - (description "This package provides a way to monitor filesystem events + (synopsis "File system events monitoring") + (description "This package provides a way to monitor file system events such as a file modification and trigger an action. This is similar to inotify, but portable.") (license license:asl2.0))) @@ -20817,9 +20817,9 @@ (define-public python-xattr `(("python-cffi" ,python-cffi))) (home-page "https://github.com/xattr/xattr") (synopsis - "Python wrapper for extended filesystem attributes") + "Python wrapper for extended file system attributes") (description "This package provides a Python wrapper for using extended -filesystem attributes. Extended attributes extend the basic attributes of files +file system attributes. Extended attributes extend the basic attributes of files and directories in the file system. They are stored as name:data pairs associated with file system objects (files, directories, symlinks, etc).") (license license:expat))) @@ -21832,10 +21832,10 @@ (define-public python-flufl-i18n (home-page "https://flufli18n.readthedocs.io") (synopsis "API for Python internationalization") (description - "This package provides a high level, convenient API for managing -internationalization translation contexts in Python application. There is a + "This package provides a high-level, convenient API for managing +internationalization/translation contexts in Python applications. There is a simple API for single-context applications, such as command line scripts which -only need to translate into one language during the entire course of thei +only need to translate into one language during the entire course of their execution. There is a more flexible, but still convenient API for multi-context applications, such as servers, which may need to switch language contexts for different tasks.") diff --git a/gnu/packages/ruby.scm b/gnu/packages/ruby.scm index c562ade153..3266db3fe8 100644 --- a/gnu/packages/ruby.scm +++ b/gnu/packages/ruby.scm @@ -648,8 +648,8 @@ (define-public ruby-sorcerer (synopsis "Ripper-style abstract syntax tree to Ruby source generator") (description "Sorcerer generates Ruby code from a Ripper-like abstract syntax tree (i.e. S-Expressions). Sorcerer is targeted mainly at small -snippets of Ruby code, expressable in a single line. Longer examples may be -re-sourced, but they will be rendered in a single line format.") +snippets of Ruby code, expressible in a single line. Longer examples may be +re-sourced, but they will be rendered in a single-line format.") (home-page "https://github.com/rspec-given/sorcerer") (license license:expat))) diff --git a/gnu/packages/rust-apps.scm b/gnu/packages/rust-apps.scm index 0700167521..dba1b26e50 100644 --- a/gnu/packages/rust-apps.scm +++ b/gnu/packages/rust-apps.scm @@ -465,7 +465,7 @@ (define-public watchexec Features: @itemize @bullet -@item Coalesces multiple filesystem events into one, for editors that +@item Coalesces multiple file system events into one, for editors that use swap/backup files during saving @item By default, uses @code{.gitignore} and @code{.ignore} to determine which files to ignore notifications for diff --git a/gnu/packages/rust.scm b/gnu/packages/rust.scm index d5914f012b..e44e78de75 100644 --- a/gnu/packages/rust.scm +++ b/gnu/packages/rust.scm @@ -449,7 +449,7 @@ (define rust-1.19 (variable "LIBRARY_PATH") (files '("lib" "lib64"))))) - (synopsis "Compiler for the Rust progamming language") + (synopsis "Compiler for the Rust programming language") (description "Rust is a systems programming language that provides memory safety and thread safety guarantees.") (home-page "https://www.rust-lang.org") diff --git a/gnu/packages/shells.scm b/gnu/packages/shells.scm index 5225e12064..6783af24ee 100644 --- a/gnu/packages/shells.scm +++ b/gnu/packages/shells.scm @@ -701,8 +701,9 @@ (define-public s-shell (home-page "https://github.com/rain-1/s") (synopsis "Extremely minimal shell with the simplest syntax possible") (description - "S is a new shell that aims to be extremely simple. -S does not implemnt the POSIX shell standard. + "S is a new shell that aims to be extremely simple. It does not +implement the POSIX shell standard. + There are no globs or \"splatting\" where a variable $FOO turns into multiple command line arguments. One token stays one token forever. This is a \"no surprises\" straightforward approach. diff --git a/gnu/packages/ssh.scm b/gnu/packages/ssh.scm index 79f8256a3f..4cac75d5fa 100644 --- a/gnu/packages/ssh.scm +++ b/gnu/packages/ssh.scm @@ -694,7 +694,7 @@ (define-public sshpass (base32 "0q7fblaczb7kwbsz0gdy9267z0sllzgmf0c7z5c9mf88wv74ycn6")))) (build-system gnu-build-system) - (description "sshpass is a tool for non-interactivly performing password + (description "sshpass is a tool for non-interactively performing password authentication with SSH's so-called @dfn{interactive keyboard password authentication}.") (license license:gpl2+))) diff --git a/gnu/packages/terminals.scm b/gnu/packages/terminals.scm index 57c84d7718..5d81619646 100644 --- a/gnu/packages/terminals.scm +++ b/gnu/packages/terminals.scm @@ -426,7 +426,7 @@ (define-public beep allowing different sounds to indicate different events. While it can be run quite happily on the command line, its intended place of residence is within scripts, notifying the user when something interesting occurs. Of course, it -has no notion of what's interesing, but it's very good at that notifying part.") +has no notion of what's interesting, but it's very good at that notifying part.") (home-page "https://github.com/spkr-beep/beep") (license license:gpl2+))) diff --git a/gnu/packages/web.scm b/gnu/packages/web.scm index 7ce087866e..21c227d8eb 100644 --- a/gnu/packages/web.scm +++ b/gnu/packages/web.scm @@ -3713,7 +3713,7 @@ (define-public perl-lwp-useragent-cached (home-page "https://metacpan.org/release/LWP-UserAgent-Cached") (synopsis "Simple caching for LWP::UserAgent") (description "LWP::UserAgent::Cached is an LWP::UserAgent subclass with -cache support. It returns responses from the local filesystem if available +cache support. It returns responses from the local file system, if available, instead of making an HTTP request.") (license license:perl-license))) diff --git a/gnu/packages/wv.scm b/gnu/packages/wv.scm index d5888674a7..a8c0d3cbaf 100644 --- a/gnu/packages/wv.scm +++ b/gnu/packages/wv.scm @@ -57,7 +57,7 @@ (define-public wv Word 9, 8, 7, and 6) to HTML or LaTeX. Word 2 documents can still be converted to plain text but will lack formatting. -Othe programs can use wv as a library to convert Word documents to other +Other programs can use wv as a library to convert Word documents to other formats. AbiWord uses it as its Word importer, and KWord uses concepts and code from wv in theirs.") (home-page "http://wvware.sourceforge.net/") -- cgit v1.2.3 From 1628d57bb5c6ab30a04202c229de642b94faac85 Mon Sep 17 00:00:00 2001 From: Efraim Flashner Date: Wed, 30 Sep 2020 08:57:27 +0300 Subject: gnu: Fix package references. * gnu/packages/algebra.scm (iml)[inputs]: Correctly refer to package inputs. * gnu/packages/astronomy.scm (xplanet), * gnu/packages/audio.scm (redkite, libaudec, lv2lint, lv2toweb), * gnu/packages/bioconductor.scm (r-cummerbund), * gnu/packages/chicken.scm (chicken), * gnu/packages/conky.scm (conky), * gnu/packages/cran.scm (r-latex2exp), * gnu/packages/crates-io.scm (rust-rgb), * gnu/packages/databases.scm (mariadb), * gnu/packages/diffoscope.scm (reprotest), * gnu/packages/file-systems.scm (glusterfs), * gnu/packages/finance.scm (electron-cash), * gnu/packages/games.scm (rinutils, ksudoku, kdiamond, kigo), * gnu/packages/geo.scm (grass), * gnu/packages/gnome.scm (libmediaart, gnome-contacts, geoclue), * gnu/packages/gnucash.scm (aqbanking), * gnu/packages/image.scm (mtpaint), * gnu/packages/kde-internet.scm (kopete, ktorrent), * gnu/packages/kde-utils.scm (kmousetool, kmouth, kronometer), * gnu/packages/linphone.scm (liblinphone), * gnu/packages/maths.scm (ppl), * gnu/packages/mercury.scm (mercury-minimal), * gnu/packages/music.scm (bjumblr, bschaffl, lsp-plugins, spectacle-analyzer, helm, tap-lv2, wolf-shaper, shiru-lv2), * gnu/packages/networking.scm (restinio), * gnu/packages/prolog.scm (swi-prolog), * gnu/packages/python-web.scm (gunicorn), * gnu/packages/python-xyz.scm (python-docusign-esign), * gnu/packages/ruby.scm (ruby-cucumber, ruby_version, ruby-addressable), * gnu/packages/sagemath.scm (python-cypari2), * gnu/packages/skarnet.scm (s6-linux-init), * gnu/packages/vpn.scm (sshuttle), * gnu/packages/web.scm (libcyaml), * gnu/packages/xdisorg.scm (kbdd), * gnu/packages/xorg.scm (xpra): Same. --- gnu/packages/algebra.scm | 2 +- gnu/packages/astronomy.scm | 2 +- gnu/packages/audio.scm | 20 ++++++------- gnu/packages/bioconductor.scm | 2 +- gnu/packages/chicken.scm | 2 +- gnu/packages/conky.scm | 2 +- gnu/packages/cran.scm | 2 +- gnu/packages/crates-io.scm | 2 +- gnu/packages/databases.scm | 2 +- gnu/packages/diffoscope.scm | 2 +- gnu/packages/file-systems.scm | 10 +++---- gnu/packages/finance.scm | 4 +-- gnu/packages/games.scm | 8 ++--- gnu/packages/geo.scm | 2 +- gnu/packages/gnome.scm | 6 ++-- gnu/packages/gnucash.scm | 2 +- gnu/packages/image.scm | 6 ++-- gnu/packages/kde-internet.scm | 4 +-- gnu/packages/kde-utils.scm | 8 ++--- gnu/packages/linphone.scm | 2 +- gnu/packages/maths.scm | 4 +-- gnu/packages/mercury.scm | 2 +- gnu/packages/music.scm | 68 +++++++++++++++++++++---------------------- gnu/packages/networking.scm | 4 +-- gnu/packages/prolog.scm | 2 +- gnu/packages/python-web.scm | 2 +- gnu/packages/python-xyz.scm | 14 ++++----- gnu/packages/ruby.scm | 6 ++-- gnu/packages/sagemath.scm | 2 +- gnu/packages/skarnet.scm | 2 +- gnu/packages/vpn.scm | 2 +- gnu/packages/web.scm | 2 +- gnu/packages/xdisorg.scm | 2 +- gnu/packages/xorg.scm | 2 +- 34 files changed, 102 insertions(+), 102 deletions(-) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/algebra.scm b/gnu/packages/algebra.scm index 262a7939df..912ec2fe64 100644 --- a/gnu/packages/algebra.scm +++ b/gnu/packages/algebra.scm @@ -1553,7 +1553,7 @@ (define-public iml "0akwhhz9b40bz6lrfxpamp7r7wkk48p455qbn04mfnl9a1l6db8x")))) (build-system gnu-build-system) (inputs - `(("gmp", gmp) + `(("gmp" ,gmp) ("cblas" ,openblas))) ; or any other BLAS library; the documentation ; mentions ATLAS in particular (arguments diff --git a/gnu/packages/astronomy.scm b/gnu/packages/astronomy.scm index 785d281887..353ba96a32 100644 --- a/gnu/packages/astronomy.scm +++ b/gnu/packages/astronomy.scm @@ -328,7 +328,7 @@ (define-public xplanet ("freetype" ,freetype) ("pango" ,pango) ("giflib" ,giflib) - ("libjpeg", libjpeg-turbo) + ("libjpeg" ,libjpeg-turbo) ("libpng" ,libpng) ("libtiff" ,libtiff) ("netpbm" ,netpbm) diff --git a/gnu/packages/audio.scm b/gnu/packages/audio.scm index a50266965b..0e93a7263e 100644 --- a/gnu/packages/audio.scm +++ b/gnu/packages/audio.scm @@ -4519,7 +4519,7 @@ (define-public redkite (inputs `(("cairo" ,cairo))) (native-inputs - `(("pkg-config", pkg-config))) + `(("pkg-config" ,pkg-config))) (synopsis "Small GUI toolkit") (description "Redkite is a small GUI toolkit developed in C++17 and inspired from other well known GUI toolkits such as Qt and GTK. It is @@ -4665,7 +4665,7 @@ (define-public libaudec `(("libsamplerate" ,libsamplerate) ("libsndfile" ,libsndfile))) (native-inputs - `(("pkg-config", pkg-config))) + `(("pkg-config" ,pkg-config))) (synopsis "Library for reading and resampling audio files") (description "libaudec is a wrapper library over ffmpeg, sndfile and libsamplerate for reading and resampling audio files, based on Robin Gareus' @@ -4693,11 +4693,11 @@ (define-public lv2lint `("-Delf-tests=true" ; for checking symbol visibility "-Donline-tests=true"))) ; for checking URI existence (inputs - `(("curl", curl) - ("libelf", libelf) - ("lilv", lilv))) + `(("curl" ,curl) + ("libelf" ,libelf) + ("lilv" ,lilv))) (native-inputs - `(("pkg-config", pkg-config))) + `(("pkg-config" ,pkg-config))) (synopsis "LV2 plugin lint tool") (description "lv2lint is an LV2 lint-like tool that checks whether a given plugin and its UI(s) match up with the provided metadata and adhere @@ -4728,11 +4728,11 @@ (define-public lv2toweb (modify-phases %standard-phases (delete 'configure)))) (inputs - `(("jalv", jalv) - ("lilv", lilv))) + `(("jalv" ,jalv) + ("lilv" ,lilv))) (native-inputs - `(("help2man", help2man) - ("pkg-config", pkg-config))) + `(("help2man" ,help2man) + ("pkg-config" ,pkg-config))) (synopsis "Documentation generator for LV2 plugins") (description "lv2toweb allows the user to create an xhtml page with information diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index 7eef0485be..4ca0906fbf 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -1115,7 +1115,7 @@ (define-public r-cummerbund (propagated-inputs `(("r-biobase" ,r-biobase) ("r-biocgenerics" ,r-biocgenerics) - ("r-fastcluster", r-fastcluster) + ("r-fastcluster" ,r-fastcluster) ("r-ggplot2" ,r-ggplot2) ("r-gviz" ,r-gviz) ("r-plyr" ,r-plyr) diff --git a/gnu/packages/chicken.scm b/gnu/packages/chicken.scm index 7b86a58012..729cf25a6c 100644 --- a/gnu/packages/chicken.scm +++ b/gnu/packages/chicken.scm @@ -59,7 +59,7 @@ (define-public chicken ;; Parallel builds are not supported, as noted in README. #:parallel-build? #f)) - (propagated-inputs `(("gcc-toolchain", gcc-toolchain))) + (propagated-inputs `(("gcc-toolchain" ,gcc-toolchain))) (home-page "https://www.call-cc.org/") (synopsis "R5RS Scheme implementation that compiles native code via C") (description diff --git a/gnu/packages/conky.scm b/gnu/packages/conky.scm index 6bae336b1c..0df6d1f760 100644 --- a/gnu/packages/conky.scm +++ b/gnu/packages/conky.scm @@ -79,7 +79,7 @@ (define-public conky ("libxext" ,libxext) ("libxft" ,libxft) ("libxinerama" ,libxinerama) - ("pulseaudio", pulseaudio) + ("pulseaudio" ,pulseaudio) ("lua" ,lua) ("ncurses" ,ncurses) ("curl" ,curl))) diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 50ce111123..0939c4d5a6 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -21899,7 +21899,7 @@ (define-public r-latex2exp (build-system r-build-system) (propagated-inputs `(("r-stringr" ,r-stringr) - ("r-magrittr", r-magrittr))) + ("r-magrittr" ,r-magrittr))) (home-page "https://github.com/stefano-meschiari/latex2exp/") (synopsis "Use LaTeX expressions in plots") (description "@code{latex2exp} parses and converts LaTeX math formulas to diff --git a/gnu/packages/crates-io.scm b/gnu/packages/crates-io.scm index 5c31a66208..37e4e69d3f 100644 --- a/gnu/packages/crates-io.scm +++ b/gnu/packages/crates-io.scm @@ -21255,7 +21255,7 @@ (define-public rust-rgb-0.8 (arguments `(#:cargo-inputs (("rust-bytemuck" ,rust-bytemuck-1) - ("rust-serde", rust-serde-1)) + ("rust-serde" ,rust-serde-1)) #:cargo-development-inputs (("rust-serde-json" ,rust-serde-json-1)))) (home-page "https://lib.rs/crates/rgb") diff --git a/gnu/packages/databases.scm b/gnu/packages/databases.scm index c86297b293..a3eef034a6 100644 --- a/gnu/packages/databases.scm +++ b/gnu/packages/databases.scm @@ -944,7 +944,7 @@ (define-public mariadb `(("bison" ,bison) ;; XXX: On armhf, use GCC 5 to work around . ,@(if (string-prefix? "armhf" (%current-system)) - `(("gcc@5", gcc-5)) + `(("gcc@5" ,gcc-5)) '()) ("perl" ,perl))) (inputs diff --git a/gnu/packages/diffoscope.scm b/gnu/packages/diffoscope.scm index 9480f1f226..3e7ab7d7ba 100644 --- a/gnu/packages/diffoscope.scm +++ b/gnu/packages/diffoscope.scm @@ -254,7 +254,7 @@ (define-public reprotest (inputs `(("python-debian" ,python-debian) ("python-distro" ,python-distro) - ("python-libarchive-c", python-libarchive-c) + ("python-libarchive-c" ,python-libarchive-c) ("python-rstr" ,python-rstr))) (native-inputs `(("diffoscope" ,diffoscope) diff --git a/gnu/packages/file-systems.scm b/gnu/packages/file-systems.scm index 046deb67ab..0d897a6307 100644 --- a/gnu/packages/file-systems.scm +++ b/gnu/packages/file-systems.scm @@ -504,8 +504,8 @@ (define-public glusterfs (lambda _ (invoke "./autogen.sh")))))) (native-inputs `(("pkg-config" ,pkg-config) - ("libtirpc", libtirpc) - ("rpcsvc-proto", rpcsvc-proto) + ("libtirpc" ,libtirpc) + ("rpcsvc-proto" ,rpcsvc-proto) ("python-2" ,python-2) ; must be version 2 ("flex" ,flex) ("bison" ,bison) @@ -515,15 +515,15 @@ (define-public glusterfs ("cmocka" ,cmocka))) (inputs `(("acl" ,acl) - ("fuse", fuse) + ("fuse" ,fuse) ("openssl" ,openssl) ("liburcu" ,liburcu) ("libuuid" ,util-linux "lib") ("libxml2" ,libxml2) ("readline" ,readline) ("zlib" ,zlib) - ("libaio", libaio) - ("rdma-core", rdma-core))) + ("libaio" ,libaio) + ("rdma-core" ,rdma-core))) (home-page "https://www.gluster.org") (synopsis "Distributed file system") (description "GlusterFS is a distributed scalable network file system diff --git a/gnu/packages/finance.scm b/gnu/packages/finance.scm index 863914bd35..05cb0ad88b 100644 --- a/gnu/packages/finance.scm +++ b/gnu/packages/finance.scm @@ -493,10 +493,10 @@ (define-public electron-cash (build-system python-build-system) (inputs `(("libevent" ,libevent) - ("libsecp256k1", libsecp256k1-bitcoin-cash) + ("libsecp256k1" ,libsecp256k1-bitcoin-cash) ("openssl" ,openssl) ("python-cython" ,python-cython) - ("python-dateutil", python-dateutil) + ("python-dateutil" ,python-dateutil) ("python-dnspython" ,python-dnspython) ("python-ecdsa" ,python-ecdsa) ("python-hidapi" ,python-hidapi) diff --git a/gnu/packages/games.scm b/gnu/packages/games.scm index a90e708ab3..4423d51336 100644 --- a/gnu/packages/games.scm +++ b/gnu/packages/games.scm @@ -7180,7 +7180,7 @@ (define-public rinutils ("pkg-config" ,pkg-config))) (inputs `(("cmocka" ,cmocka) - ("perl-env-path", perl-env-path) + ("perl-env-path" ,perl-env-path) ("perl-inline" ,perl-inline) ("perl-inline-c" ,perl-inline-c) ("perl-string-shellquote" ,perl-string-shellquote) @@ -10176,7 +10176,7 @@ (define-public ksudoku `(("extra-cmake-modules" ,extra-cmake-modules) ("kdoctools" ,kdoctools))) (inputs - `(("karchive", karchive) + `(("karchive" ,karchive) ("kconfig" ,kconfig) ("kconfigwidgets" ,kconfigwidgets) ("kcoreaddons" ,kcoreaddons) @@ -10322,7 +10322,7 @@ (define-public kdiamond `(("extra-cmake-modules" ,extra-cmake-modules) ("kdoctools" ,kdoctools))) (inputs - `(("kcompletion", kcompletion) + `(("kcompletion" ,kcompletion) ("kconfig" ,kconfig) ("kconfigwidgets" ,kconfigwidgets) ("kcoreaddons" ,kcoreaddons) @@ -10714,7 +10714,7 @@ (define-public kigo ("kdbusaddons" ,kdbusaddons) ("ki18n" ,ki18n) ("kio" ,kio) - ("knewstuff", knewstuff) + ("knewstuff" ,knewstuff) ("ktextwidgets" ,ktextwidgets) ("kxmlgui" ,kxmlgui) ("libkdegames" ,libkdegames) diff --git a/gnu/packages/geo.scm b/gnu/packages/geo.scm index 291b928338..0605d84c0e 100644 --- a/gnu/packages/geo.scm +++ b/gnu/packages/geo.scm @@ -1776,7 +1776,7 @@ (define-public grass (base32 "1fwsm99kz0bxvjk7442qq1h45ikrmhba8bqclafb61gqg1q6ymrk")))) (build-system gnu-build-system) (inputs - `(("bzip2", bzip2) + `(("bzip2" ,bzip2) ("cairo" ,cairo) ("fftw" ,fftw) ("freetype" ,freetype) diff --git a/gnu/packages/gnome.scm b/gnu/packages/gnome.scm index 77ed6678cd..da4b2771e8 100644 --- a/gnu/packages/gnome.scm +++ b/gnu/packages/gnome.scm @@ -1299,7 +1299,7 @@ (define-public libmediaart `(("gdk-pixbuf" ,gdk-pixbuf) ("gettext" ,gettext-minimal) ("gobject-introspection" ,gobject-introspection) - ("gtk+:doc", gtk+ "doc") + ("gtk+:doc" ,gtk+ "doc") ("vala" ,vala))) (synopsis "Media art library for the GNOME desktop") (description @@ -1961,7 +1961,7 @@ (define goa ("telepathy-glib" ,telepathy-glib) ("vala" ,vala))) (propagated-inputs - `(("folks", folks) + `(("folks" ,folks) ("telepathy-mission-control" ,telepathy-mission-control))) (synopsis "GNOME's integrated address book") (description @@ -5025,7 +5025,7 @@ (define-public geoclue ("gobject-introspection" ,gobject-introspection) ("modem-manager" ,modem-manager) ("libnotify" ,libnotify) - ("gtk-doc", gtk-doc) + ("gtk-doc" ,gtk-doc) ("intltool" ,intltool))) (inputs `(("avahi" ,avahi) diff --git a/gnu/packages/gnucash.scm b/gnu/packages/gnucash.scm index 43aad3ed02..8f58ce332a 100644 --- a/gnu/packages/gnucash.scm +++ b/gnu/packages/gnucash.scm @@ -293,7 +293,7 @@ (define-public aqbanking ("gnutls" ,gnutls))) (native-inputs `(("pkg-config" ,pkg-config) - ("gettext-minimal", gettext-minimal) + ("gettext-minimal" ,gettext-minimal) ("libltdl" ,libltdl))) (home-page "https://www.aquamaniac.de/sites/aqbanking/index.php") (synopsis "Interface for online banking tasks") diff --git a/gnu/packages/image.scm b/gnu/packages/image.scm index bec03886a6..8fbdd0b4ae 100644 --- a/gnu/packages/image.scm +++ b/gnu/packages/image.scm @@ -2180,12 +2180,12 @@ (define-public mtpaint `(("imlib2" ,imlib2) ("libtiff" ,libtiff) ("libpng" ,libpng) - ("libungif", libungif) - ("libjpeg", libjpeg-turbo) + ("libungif" ,libungif) + ("libjpeg" ,libjpeg-turbo) ("libwebp" ,libwebp) ("openjpeg" ,openjpeg) ("lcms" ,lcms) - ("zlib", zlib) + ("zlib" ,zlib) ("glib" ,glib) ;; Support for gtk3 is in the testing stage. ("gtk+" ,gtk+-2))) diff --git a/gnu/packages/kde-internet.scm b/gnu/packages/kde-internet.scm index f9cd29e9b8..800554a36e 100644 --- a/gnu/packages/kde-internet.scm +++ b/gnu/packages/kde-internet.scm @@ -297,7 +297,7 @@ (define-public kopete ("libxml2" ,libxml2) ("libxstl" ,libxslt) ;; TODO: Mediastreamer - ("openssl", openssl) + ("openssl" ,openssl) ("ortp" ,ortp) ("phonon" ,phonon) ("qca" ,qca) @@ -403,7 +403,7 @@ (define-public ktorrent ("knotifyconfig" ,knotifyconfig) ("kparts" ,kparts) ("kplotting" ,kplotting) - ("kross", kross) + ("kross" ,kross) ("kwidgetsaddons" ,kwidgetsaddons) ("kwindowsystem" ,kwindowsystem) ("kxmlgui" ,kxmlgui) diff --git a/gnu/packages/kde-utils.scm b/gnu/packages/kde-utils.scm index 4d9f3736c8..00ef15b9d9 100644 --- a/gnu/packages/kde-utils.scm +++ b/gnu/packages/kde-utils.scm @@ -149,7 +149,7 @@ (define-public kmousetool (inputs `(("kauth" ,kauth) ("kcoreaddons" ,kcoreaddons) - ("kconfigwidgets", kconfigwidgets) + ("kconfigwidgets" ,kconfigwidgets) ("kdbusaddons" ,kdbusaddons) ("ki18n" ,ki18n) ("kiconthemes" ,kiconthemes) @@ -187,8 +187,8 @@ (define-public kmouth ("kdoctools" ,kdoctools))) (inputs `(("kcompletion" ,kcompletion) - ("kconfig", kconfig) - ("kconfigwidgets", kconfigwidgets) + ("kconfig" ,kconfig) + ("kconfigwidgets" ,kconfigwidgets) ("kcoreaddons" ,kcoreaddons) ("kcrash" ,kcrash) ("ki18n" ,ki18n) @@ -228,7 +228,7 @@ (define-public kronometer (inputs `(("kauth" ,kauth) ("kconfig" ,kconfig) - ("kconfigwidgets", kconfigwidgets) + ("kconfigwidgets" ,kconfigwidgets) ("kcoreaddons" ,kcoreaddons) ("kcrash" ,kcrash) ("ki18n" ,ki18n) diff --git a/gnu/packages/linphone.scm b/gnu/packages/linphone.scm index a6492893c8..777485b9ea 100644 --- a/gnu/packages/linphone.scm +++ b/gnu/packages/linphone.scm @@ -483,7 +483,7 @@ (define-public liblinphone `(("bctoolbox" ,bctoolbox) ("belcard" ,belcard) ("bellesip" ,belle-sip) - ("bzrtp", bzrtp) + ("bzrtp" ,bzrtp) ("iconv" ,libiconv) ("glib" ,glib) ("gtk2" ,gtk+-2) diff --git a/gnu/packages/maths.scm b/gnu/packages/maths.scm index ce393cba80..93ee2db60a 100644 --- a/gnu/packages/maths.scm +++ b/gnu/packages/maths.scm @@ -5764,10 +5764,10 @@ (define-public ppl "1j5aji1g2vmdvc0gqz45n2ll2l2f6czca04wiyfl5g3sm3a6vhvb")))) (build-system gnu-build-system) (native-inputs - `(("m4", m4))) + `(("m4" ,m4))) (inputs `(("glpk" ,glpk) - ("gmp", gmp))) + ("gmp" ,gmp))) (home-page "https://www.bugseng.com/parma-polyhedra-library") (synopsis "Parma Polyhedra Library for computations with polyhedra") diff --git a/gnu/packages/mercury.scm b/gnu/packages/mercury.scm index a6ae451e63..bab8909862 100644 --- a/gnu/packages/mercury.scm +++ b/gnu/packages/mercury.scm @@ -138,7 +138,7 @@ (define-public mercury-minimal (native-inputs `(("texinfo" ,texinfo) ("flex" ,flex) - ("tcsh", tcsh) + ("tcsh" ,tcsh) ("bison" ,bison) ("readline" ,readline) ("libatomic-ops" ,(package-source diff --git a/gnu/packages/music.scm b/gnu/packages/music.scm index 54c8e14669..1727bac7b8 100644 --- a/gnu/packages/music.scm +++ b/gnu/packages/music.scm @@ -1391,9 +1391,9 @@ (define-public bjumblr (base32 "0kl6hrxmqrdf0195bfnzsa2h1073fgiqrfhg2276fm1954sm994v")))) (inputs - `(("cairo", cairo) - ("libsndfile", libsndfile) - ("lv2", lv2))) + `(("cairo" ,cairo) + ("libsndfile" ,libsndfile) + ("lv2" ,lv2))) (synopsis "Pattern-controlled audio stream/sample re-sequencer LV2 plugin") (description "B.Jumblr is a pattern-controlled audio stream / sample re-sequencer LV2 plugin.") @@ -1416,11 +1416,11 @@ (define-public bschaffl (base32 "1c09acqrbd387ba41f8ch1qykdap5h6cg9if5pgd16i4dmjnpghj")))) (inputs - `(("cairo", cairo) + `(("cairo" ,cairo) ("fontconfig" ,fontconfig) - ("libsndfile", libsndfile) + ("libsndfile" ,libsndfile) ("libx11" ,libx11) - ("lv2", lv2))) + ("lv2" ,lv2))) (home-page "https://github.com/sjaehn/BSchaffl") (synopsis "Pattern-controlled MIDI amp & time stretch LV2 plugin") (description "This package provides an LV2 plugin that allows for @@ -5098,15 +5098,15 @@ (define-public lsp-plugins (delete 'configure)) ; no configure #:test-target "test")) (inputs - `(("cairo", cairo) - ("hicolor-icon-theme", hicolor-icon-theme) - ("jack", jack-1) - ("ladspa", ladspa) - ("libsndfile", libsndfile) - ("lv2", lv2) - ("mesa", mesa))) + `(("cairo" ,cairo) + ("hicolor-icon-theme" ,hicolor-icon-theme) + ("jack" ,jack-1) + ("ladspa" ,ladspa) + ("libsndfile" ,libsndfile) + ("lv2" ,lv2) + ("mesa" ,mesa))) (native-inputs - `(("pkg-config", pkg-config))) + `(("pkg-config" ,pkg-config))) (synopsis "Audio plugin collection") (description "LSP (Linux Studio Plugins) is a collection of audio plugins available as LADSPA/LV2 plugins and as standalone JACK @@ -5216,12 +5216,12 @@ (define-public spectacle-analyzer `(("pkg-config" ,pkg-config) ("xxd" ,xxd))) (inputs - `(("cairo", cairo) - ("fftw", fftw) - ("fftwf", fftwf) - ("jack", jack-1) - ("lv2", lv2) - ("mesa", mesa))) + `(("cairo" ,cairo) + ("fftw" ,fftw) + ("fftwf" ,fftwf) + ("jack" ,jack-1) + ("lv2" ,lv2) + ("mesa" ,mesa))) (synopsis "Realtime graphical spectrum analyzer") (description "Spectacle is a real-time spectral analyzer using the short-time Fourier transform, available as LV2 audio plugin and JACK client.") @@ -5515,12 +5515,12 @@ (define-public helm ("freetype2" ,freetype) ("hicolor-icon-theme" ,hicolor-icon-theme) ("libxcursor" ,libxcursor) - ("libxinerama", libxinerama) - ("jack", jack-1) + ("libxinerama" ,libxinerama) + ("jack" ,jack-1) ("mesa" ,mesa))) (native-inputs `(("pkg-config" ,pkg-config) - ("lv2", lv2))) + ("lv2" ,lv2))) (home-page "https://tytel.org/helm/") (synopsis "Polyphonic synth with lots of modulation") (description "Helm is a cross-platform polyphonic synthesizer available standalone @@ -5845,9 +5845,9 @@ (define-public tap-lv2 "/lib/lv2") "install")))))) (inputs - `(("lv2", lv2))) + `(("lv2" ,lv2))) (native-inputs - `(("pkg-config", pkg-config))) + `(("pkg-config" ,pkg-config))) (synopsis "Audio plugin collection") (description "TAP (Tom's Audio Processing) plugins is a collection of audio effect plugins originally released as LADSPA plugins. This package @@ -5903,9 +5903,9 @@ (define-public wolf-shaper (native-inputs `(("pkg-config" ,pkg-config))) (inputs - `(("jack", jack-1) - ("lv2", lv2) - ("mesa", mesa))) + `(("jack" ,jack-1) + ("lv2" ,lv2) + ("mesa" ,mesa))) (synopsis "Waveshaper plugin") (description "Wolf Shaper is a waveshaper plugin with a graph editor. It is provided as an LV2 plugin and as a standalone Jack application.") @@ -5985,12 +5985,12 @@ (define-public shiru-lv2 (native-inputs `(("pkg-config" ,pkg-config))) (inputs - `(("cairo", cairo) - ("glu", glu) - ("jack", jack-1) - ("lv2", lv2) - ("mesa", mesa) - ("pango", pango))) + `(("cairo" ,cairo) + ("glu" ,glu) + ("jack" ,jack-1) + ("lv2" ,lv2) + ("mesa" ,mesa) + ("pango" ,pango))) (synopsis "Audio plugin collection") (description "Shiru plugins is a collection of audio plugins created by Shiru, ported to LV2 by the Linux MAO project using the DISTRHO plugin diff --git a/gnu/packages/networking.scm b/gnu/packages/networking.scm index 8b46bd7d24..7679d62059 100644 --- a/gnu/packages/networking.scm +++ b/gnu/packages/networking.scm @@ -3275,9 +3275,9 @@ (define-public restinio ("pcre2" ,pcre2) ("sobjectizer" ,sobjectizer))) (propagated-inputs - `(("asio", asio) + `(("asio" ,asio) ("fmt" ,fmt) - ("http-parser", http-parser))) + ("http-parser" ,http-parser))) (arguments `(#:configure-flags '("-DRESTINIO_INSTALL=on") #:tests? #f ; TODO: The tests are called from the root CMakelist, need RESTINIO_TEST=on. diff --git a/gnu/packages/prolog.scm b/gnu/packages/prolog.scm index 86b4bd2107..0e5f4b9b01 100644 --- a/gnu/packages/prolog.scm +++ b/gnu/packages/prolog.scm @@ -125,7 +125,7 @@ (define-public swi-prolog ("texinfo" ,texinfo) ("libarchive" ,libarchive) ("libunwind" ,libunwind) - ("libjpeg", libjpeg-turbo) + ("libjpeg" ,libjpeg-turbo) ("libxft" ,libxft) ("fontconfig" ,fontconfig) ("perl" ,perl) diff --git a/gnu/packages/python-web.scm b/gnu/packages/python-web.scm index bb2fc850c9..dde0e447e3 100644 --- a/gnu/packages/python-web.scm +++ b/gnu/packages/python-web.scm @@ -4118,7 +4118,7 @@ (define-public gunicorn #t))))) (native-inputs `(("binutils" ,binutils) ;; for ctypes.util.find_library() - ("python-aiohttp", python-aiohttp) + ("python-aiohttp" ,python-aiohttp) ("python-pytest" ,python-pytest) ("python-pytest-cov" ,python-pytest-cov) ("python-sphinx" ,python-sphinx) diff --git a/gnu/packages/python-xyz.scm b/gnu/packages/python-xyz.scm index 6c3e991de8..22a356d11b 100644 --- a/gnu/packages/python-xyz.scm +++ b/gnu/packages/python-xyz.scm @@ -20788,13 +20788,13 @@ (define-public python-docusign-esign ;; Testing requires undocumented setup changes, and so testing is disabled here. (arguments `(#:tests? #f)) (propagated-inputs - `(("python-certifi", python-certifi) - ("python-six", python-six) - ("python-dateutil", python-dateutil) - ("python-urllib3", python-urllib3) - ("python-pyjwt", python-pyjwt) - ("python-cryptography", python-cryptography) - ("python-nose", python-nose))) + `(("python-certifi" ,python-certifi) + ("python-six" ,python-six) + ("python-dateutil" ,python-dateutil) + ("python-urllib3" ,python-urllib3) + ("python-pyjwt" ,python-pyjwt) + ("python-cryptography" ,python-cryptography) + ("python-nose" ,python-nose))) (synopsis "DocuSign Python Client") (description "The Official DocuSign Python Client Library used to interact with the eSign REST API. Send, sign, and approve documents using this client.") diff --git a/gnu/packages/ruby.scm b/gnu/packages/ruby.scm index 3266db3fe8..7348f29eb1 100644 --- a/gnu/packages/ruby.scm +++ b/gnu/packages/ruby.scm @@ -7792,7 +7792,7 @@ (define-public ruby-cucumber (native-inputs `(;; Use a untested version of aruba, to avoid a circular dependency, as ;; ruby-aruba depends on ruby-cucumber. - ("ruby-aruba", ruby-aruba-without-tests) + ("ruby-aruba" ,ruby-aruba-without-tests) ("ruby-rspec" ,ruby-rspec) ("ruby-pry" ,ruby-pry) ("ruby-nokogiri" ,ruby-nokogiri) @@ -8851,7 +8851,7 @@ (define-public ruby_version (native-inputs `(("ruby-rdoc" ,ruby-rdoc) ("ruby-rspec" ,ruby-rspec) - ("ruby-rubygems-tasks", ruby-rubygems-tasks))) + ("ruby-rubygems-tasks" ,ruby-rubygems-tasks))) (synopsis "Ruby library to help check the Ruby version") (description "@code{ruby_version} provides a @code{RubyVersion} module to simplify checking for the right Ruby version in software.") @@ -9963,7 +9963,7 @@ (define-public ruby-addressable ("bundler" ,bundler) ("ruby-idn-ruby" ,ruby-idn-ruby) ("ruby-sporkmonger-rack-mount" ,ruby-sporkmonger-rack-mount) - ("ruby-rspec-its", ruby-rspec-its-minimal) + ("ruby-rspec-its" ,ruby-rspec-its-minimal) ("ruby-yard" ,ruby-yard) ("ruby-simplecov" ,ruby-simplecov))) (propagated-inputs diff --git a/gnu/packages/sagemath.scm b/gnu/packages/sagemath.scm index 8c837fdaeb..943e9ba5b9 100644 --- a/gnu/packages/sagemath.scm +++ b/gnu/packages/sagemath.scm @@ -59,7 +59,7 @@ (define-public python-cypari2 `(("python-cysignals" ,python-cysignals))) (inputs `(("gmp" ,gmp) - ("pari-gp", pari-gp))) + ("pari-gp" ,pari-gp))) (home-page "https://cypari2.readthedocs.io/") (synopsis "Python interface to the number theory library libpari") diff --git a/gnu/packages/skarnet.scm b/gnu/packages/skarnet.scm index 8032a5e505..f171967957 100644 --- a/gnu/packages/skarnet.scm +++ b/gnu/packages/skarnet.scm @@ -307,7 +307,7 @@ (define-public s6-linux-init (build-system gnu-build-system) (inputs `(("execline" ,execline) - ("s6", s6) + ("s6" ,s6) ("skalibs" ,skalibs))) (arguments '(#:configure-flags diff --git a/gnu/packages/vpn.scm b/gnu/packages/vpn.scm index c704106221..d22f9ccd5d 100644 --- a/gnu/packages/vpn.scm +++ b/gnu/packages/vpn.scm @@ -405,7 +405,7 @@ (define-public sshuttle (native-inputs `(("python-setuptools-scm" ,python-setuptools-scm) ;; For tests only. - ("python-flake8", python-flake8) + ("python-flake8" ,python-flake8) ("python-mock" ,python-mock) ("python-pytest-cov" ,python-pytest-cov) ("python-pytest-runner" ,python-pytest-runner))) diff --git a/gnu/packages/web.scm b/gnu/packages/web.scm index 21c227d8eb..ab8daf31cf 100644 --- a/gnu/packages/web.scm +++ b/gnu/packages/web.scm @@ -5050,7 +5050,7 @@ (define-public libcyaml (inputs `(("libyaml" ,libyaml))) (native-inputs - `(("pkg-config", pkg-config))) + `(("pkg-config" ,pkg-config))) (synopsis "C library for reading and writing YAML") (description "LibCYAML is a C library written in ISO C11 for reading and writing diff --git a/gnu/packages/xdisorg.scm b/gnu/packages/xdisorg.scm index bbbbd0d7f5..5398761c65 100644 --- a/gnu/packages/xdisorg.scm +++ b/gnu/packages/xdisorg.scm @@ -2437,7 +2437,7 @@ (define-public kbdd ("glib" ,glib "bin") ("pkg-config" ,pkg-config))) (inputs - `(("dbus-glib", dbus-glib) + `(("dbus-glib" ,dbus-glib) ("glib" ,glib) ("libx11" ,libx11))) (home-page "https://github.com/qnikst/kbdd") diff --git a/gnu/packages/xorg.scm b/gnu/packages/xorg.scm index 8df6407e26..8ff62a1a84 100644 --- a/gnu/packages/xorg.scm +++ b/gnu/packages/xorg.scm @@ -6339,7 +6339,7 @@ (define-public xpra ("python-pillow" ,python-pillow) ;; Optional dependencies. ("python-rencode" ,python-rencode) ; For speed. - ("python-numpy", python-numpy) + ("python-numpy" ,python-numpy) ("python-pyopengl" ,python-pyopengl) ; Drawing acceleration. ("python-pyopengl-accelerate" ,python-pyopengl-accelerate) ; Same. ("python-paramiko" ,python-paramiko) ; Tunneling over SSH. -- cgit v1.2.3 From f5defed0df4bb8654e5e58018ce1e0a6383381b6 Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Mon, 5 Oct 2020 22:08:10 +0200 Subject: gnu: Add r-rle. * gnu/packages/cran.scm (r-rle): New variable. --- gnu/packages/cran.scm | 21 +++++++++++++++++++++ 1 file changed, 21 insertions(+) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 0939c4d5a6..fdada68edc 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -4774,6 +4774,27 @@ (define-public r-stabs arbitrary user specified variable selection approaches.") (license license:gpl2))) +(define-public r-rle + (package + (name "r-rle") + (version "0.9.2") + (source + (origin + (method url-fetch) + (uri (cran-uri "rle" version)) + (sha256 + (base32 + "0sagl0jggg40lihzy7pfq4593rfvc3b3f7g6ggi85s7n18qvwg40")))) + (properties `((upstream-name . "rle"))) + (build-system r-build-system) + (home-page "https://cran.r-project.org/web/packages/rle/") + (synopsis "Common functions for run-length encoded vectors") + (description + "This package provides common @code{base} and @code{stats} methods for +@code{rle} objects, aiming to make it possible to treat them transparently as +vectors.") + (license license:gpl3))) + (define-public r-statnet-common (package (name "r-statnet-common") -- cgit v1.2.3 From 64d4816881baf25432ec9ffaaf151023fd0f115c Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Mon, 5 Oct 2020 22:09:09 +0200 Subject: gnu: Add r-warp. * gnu/packages/cran.scm (r-warp): New variable. --- gnu/packages/cran.scm | 25 +++++++++++++++++++++++++ 1 file changed, 25 insertions(+) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index fdada68edc..e4ddd87649 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -23775,6 +23775,31 @@ (define-public r-yardstick and regression metrics (e.g., RMSE).") (license license:gpl2))) +(define-public r-warp + (package + (name "r-warp") + (version "0.1.0") + (source + (origin + (method url-fetch) + (uri (cran-uri "warp" version)) + (sha256 + (base32 + "16bmym91h0sbbh4iqasqs0f4kp3jqlm3sqgc356mznhxwnsm8dm2")))) + (properties `((upstream-name . "warp"))) + (build-system r-build-system) + (native-inputs `(("r-knitr" ,r-knitr))) + (home-page "https://github.com/DavisVaughan/warp") + (synopsis "Group dates") + (description + "This package provides tooling to group dates by a variety of periods +including: yearly, monthly, by second, by week of the month, and more. The +groups are defined in such a way that they also represent the distance between +dates in terms of the period. This extracts valuable information that can be +used in further calculations that rely on a specific temporal spacing between +observations.") + (license license:expat))) + (define-public r-rsample (package (name "r-rsample") -- cgit v1.2.3 From b0728c4d7e24da01dd44d654e2cdbaf29bc2b821 Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Mon, 5 Oct 2020 22:09:20 +0200 Subject: gnu: Add r-slider. * gnu/packages/cran.scm (r-slider): New variable. --- gnu/packages/cran.scm | 28 ++++++++++++++++++++++++++++ 1 file changed, 28 insertions(+) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index e4ddd87649..92ce7287c4 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -23800,6 +23800,34 @@ (define-public r-warp observations.") (license license:expat))) +(define-public r-slider + (package + (name "r-slider") + (version "0.1.5") + (source + (origin + (method url-fetch) + (uri (cran-uri "slider" version)) + (sha256 + (base32 + "1x4jwfxam4czfkb1s5qds5krfw1h2p5a4rh6f5z4yvhsv0d81xck")))) + (properties `((upstream-name . "slider"))) + (build-system r-build-system) + (propagated-inputs + `(("r-glue" ,r-glue) + ("r-rlang" ,r-rlang) + ("r-vctrs" ,r-vctrs) + ("r-warp" ,r-warp))) + (native-inputs `(("r-knitr" ,r-knitr))) + (home-page "https://github.com/DavisVaughan/slider") + (synopsis "Sliding window functions") + (description + "This package provides type-stable rolling window functions over any R +data type. Cumulative and expanding windows are also supported. For more +advanced usage, an index can be used as a secondary vector that defines how +sliding windows are to be created.") + (license license:expat))) + (define-public r-rsample (package (name "r-rsample") -- cgit v1.2.3 From 5f9f23f43cd6efd18ae431ddd0a10f9e94124f5b Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Mon, 5 Oct 2020 22:12:19 +0200 Subject: gnu: r-rticles: Update to 0.16. * gnu/packages/cran.scm (r-rticles): Update to 0.16. --- gnu/packages/cran.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 92ce7287c4..9ff27c3a7c 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -99,14 +99,14 @@ (define-module (gnu packages cran) (define-public r-rticles (package (name "r-rticles") - (version "0.15") + (version "0.16") (source (origin (method url-fetch) (uri (cran-uri "rticles" version)) (sha256 (base32 - "0svh2bcqnlqdxdpw5afz1b980i2q13k8cxpq6flfqbi3dlwf3h8l")))) + "1ca3k5sdy9mnm6frcimqwf5k18j14wn69x5iagjnjwhq711l8dv0")))) (properties `((upstream-name . "rticles"))) (build-system r-build-system) (propagated-inputs -- cgit v1.2.3 From 1b3d184e67d8120e0c9eefa5e0e89cd0d004d1e4 Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Mon, 5 Oct 2020 22:12:23 +0200 Subject: gnu: r-htmlwidgets: Update to 1.5.2. * gnu/packages/cran.scm (r-htmlwidgets): Update to 1.5.2. [native-inputs]: Add r-knitr. --- gnu/packages/cran.scm | 6 ++++-- 1 file changed, 4 insertions(+), 2 deletions(-) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 9ff27c3a7c..1aeed1d309 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -989,18 +989,20 @@ (define-public r-htmltools (define-public r-htmlwidgets (package (name "r-htmlwidgets") - (version "1.5.1") + (version "1.5.2") (source (origin (method url-fetch) (uri (cran-uri "htmlwidgets" version)) (sha256 (base32 - "10fp306l1nybkah6jrlrqwwdb6zvklbddp8i3w9v9naj8la5jbnl")))) + "0072wlkl58lav3qszzqw6pmx8qra4784r0yb6rx4lg7rbrik6335")))) (build-system r-build-system) (propagated-inputs `(("r-htmltools" ,r-htmltools) ("r-jsonlite" ,r-jsonlite) ("r-yaml" ,r-yaml))) + (native-inputs + `(("r-knitr" ,r-knitr))) (home-page "https://github.com/ramnathv/htmlwidgets") (synopsis "HTML Widgets for R") (description -- cgit v1.2.3 From 4fcf7626f7bfdc4c3ab7cfb5fef49ef4f96b447f Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Mon, 5 Oct 2020 22:12:26 +0200 Subject: gnu: r-htmltable: Update to 2.1.0. * gnu/packages/cran.scm (r-htmltable): Update to 2.1.0. --- gnu/packages/cran.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 1aeed1d309..2e1083f338 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -1014,13 +1014,13 @@ (define-public r-htmlwidgets (define-public r-htmltable (package (name "r-htmltable") - (version "2.0.1") + (version "2.1.0") (source (origin (method url-fetch) (uri (cran-uri "htmlTable" version)) (sha256 - (base32 "0ma52kajzxfg9w811d6ldhghzn9xhyr8bh7k5v265k82bzx7rac6")))) + (base32 "1gzh0bdxi55p1ckxv4k0a41b1j0grwv2w3lkqz4c3gkw66dk6ja0")))) (properties `((upstream-name . "htmlTable"))) (build-system r-build-system) (propagated-inputs -- cgit v1.2.3 From 271e4a325ec432769af883dfe680a8eac9c16171 Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Mon, 5 Oct 2020 22:12:29 +0200 Subject: gnu: r-getoptlong: Update to 1.0.3. * gnu/packages/cran.scm (r-getoptlong): Update to 1.0.3. --- gnu/packages/cran.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 2e1083f338..1b3983fd1e 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -2411,14 +2411,14 @@ (define-public r-dendextend (define-public r-getoptlong (package (name "r-getoptlong") - (version "1.0.2") + (version "1.0.3") (source (origin (method url-fetch) (uri (cran-uri "GetoptLong" version)) (sha256 (base32 - "1p89v2qzqfxyrmqzkv245716n9i4bllnq77a6gw811mgdhxbd51l")))) + "142gi3ifpcz1rhqrbw4wh326jn2q61s659wkzf92ys4dybs43dky")))) (properties `((upstream-name . "GetoptLong"))) (build-system r-build-system) (inputs -- cgit v1.2.3 From f8ca0afa19af170b607d72788f0ff95f8b0e5f13 Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Mon, 5 Oct 2020 22:12:34 +0200 Subject: gnu: r-lava: Update to 1.6.8. * gnu/packages/cran.scm (r-lava): Update to 1.6.8. [native-inputs]: Add r-knitr. --- gnu/packages/cran.scm | 6 ++++-- 1 file changed, 4 insertions(+), 2 deletions(-) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 1b3983fd1e..4298b41433 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -3173,19 +3173,21 @@ (define-public r-squarem (define-public r-lava (package (name "r-lava") - (version "1.6.7") + (version "1.6.8") (source (origin (method url-fetch) (uri (cran-uri "lava" version)) (sha256 (base32 - "0ffzxbb8pvfh1m6j61az4ga37snyhylq2941fyc76w7w9i2sixv3")))) + "0jdmjjs894mfncswmzz7sa6cy7hqbqii5fcvl3zqkmzpbadb2za2")))) (build-system r-build-system) (propagated-inputs `(("r-numderiv" ,r-numderiv) ("r-squarem" ,r-squarem) ("r-survival" ,r-survival))) + (native-inputs + `(("r-knitr" ,r-knitr))) (home-page "https://github.com/kkholst/lava") (synopsis "Latent variable models") (description -- cgit v1.2.3 From 6016d52f42cff031ade0d926c44a43e2ef9e462a Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Mon, 5 Oct 2020 22:12:37 +0200 Subject: gnu: r-psych: Update to 2.0.9. * gnu/packages/cran.scm (r-psych): Update to 2.0.9. --- gnu/packages/cran.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 4298b41433..c800c7cd6b 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -3529,14 +3529,14 @@ (define-public r-ipred (define-public r-psych (package (name "r-psych") - (version "2.0.8") + (version "2.0.9") (source (origin (method url-fetch) (uri (cran-uri "psych" version)) (sha256 (base32 - "0ymds7ql2dv994m73h68dnhbsws8bl09p2rqvl6xsq6c6xr0yryg")))) + "0wdh580a0psbdil28n0d85hnp42wmn11hcbnihjq8r7h54drgzpn")))) (build-system r-build-system) (propagated-inputs `(("r-lattice" ,r-lattice) -- cgit v1.2.3 From fec04395bb6bca3ad2b9fede4a8e952f09fceac8 Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Mon, 5 Oct 2020 22:12:40 +0200 Subject: gnu: r-broom: Update to 0.7.1. * gnu/packages/cran.scm (r-broom): Update to 0.7.1. --- gnu/packages/cran.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index c800c7cd6b..de73218007 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -3582,14 +3582,14 @@ (define-public r-generics (define-public r-broom (package (name "r-broom") - (version "0.7.0") + (version "0.7.1") (source (origin (method url-fetch) (uri (cran-uri "broom" version)) (sha256 (base32 - "0bq8w1ckrladzck2g0mgiyjdrzi06kbqalk5q3pfvj1607fdv3d5")))) + "12xnpmm1cyhksv4gwcrwgrpw7c0xf1c7chlpng9lk8arifbfvqpg")))) (build-system r-build-system) (propagated-inputs `(("r-backports" ,r-backports) -- cgit v1.2.3 From daba9cffc26f10e3979d7d325876765a2730fd63 Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Mon, 5 Oct 2020 22:12:43 +0200 Subject: gnu: r-hardyweinberg: Update to 1.6.8. * gnu/packages/cran.scm (r-hardyweinberg): Update to 1.6.8. --- gnu/packages/cran.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index de73218007..1d679ab916 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -3990,14 +3990,14 @@ (define-public r-rsolnp (define-public r-hardyweinberg (package (name "r-hardyweinberg") - (version "1.6.6") + (version "1.6.8") (source (origin (method url-fetch) (uri (cran-uri "HardyWeinberg" version)) (sha256 (base32 - "1qn1bbzfk4w3mqrzisshw5xx7x249sgmj6qdi39lkqb58a4mf4kh")))) + "0b6j1mkpr7ck2nr9fmpnsjdv29jc6vg4b91cg50skmcgky1j0zi7")))) (properties `((upstream-name . "HardyWeinberg"))) (build-system r-build-system) (propagated-inputs -- cgit v1.2.3 From 54753cf0ee4381a62c8698a4e5015ac5800d27a9 Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Mon, 5 Oct 2020 22:12:46 +0200 Subject: gnu: r-vcd: Update to 1.4-8. * gnu/packages/cran.scm (r-vcd): Update to 1.4-8. --- gnu/packages/cran.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 1d679ab916..198bcc94f6 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -4190,14 +4190,14 @@ (define-public r-laeken (define-public r-vcd (package (name "r-vcd") - (version "1.4-7") + (version "1.4-8") (source (origin (method url-fetch) (uri (cran-uri "vcd" version)) (sha256 (base32 - "16aj688nhlcvdxzfsqh4s375v8f8vl8997dl8h1xg29b42nv52gc")))) + "030yyhpzsj4ivwrla7p9kgvmyjh6b8fr7czf678ykxjj64ccnvr3")))) (build-system r-build-system) (propagated-inputs `(("r-colorspace" ,r-colorspace) -- cgit v1.2.3 From e3199b4b4d4b57c100634b021ba7023ba9c04b2a Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Mon, 5 Oct 2020 22:12:49 +0200 Subject: gnu: r-dtw: Update to 1.22-3. * gnu/packages/cran.scm (r-dtw): Update to 1.22-3. --- gnu/packages/cran.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 198bcc94f6..1c8337ff36 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -4236,14 +4236,14 @@ (define-public r-ica (define-public r-dtw (package (name "r-dtw") - (version "1.21-3") + (version "1.22-3") (source (origin (method url-fetch) (uri (cran-uri "dtw" version)) (sha256 (base32 - "02hyhx1sy5h3vzh9zixy18a7d47df4k5d0wyflcvlcbsbcl6p90s")))) + "004gm4mzgdzdj807j3bwqsv5lizmnmz5jq514bdjshhkysnzjz6z")))) (build-system r-build-system) (propagated-inputs `(("r-proxy" ,r-proxy))) (home-page "http://dtw.r-forge.r-project.org/") -- cgit v1.2.3 From c4eff84f769b4dd7298c5dc9279778839a64202f Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Mon, 5 Oct 2020 22:12:53 +0200 Subject: gnu: r-seriation: Update to 1.2-9. * gnu/packages/cran.scm (r-seriation): Update to 1.2-9. --- gnu/packages/cran.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 1c8337ff36..5e475c5ca1 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -4526,14 +4526,14 @@ (define-public r-webshot (define-public r-seriation (package (name "r-seriation") - (version "1.2-8") + (version "1.2-9") (source (origin (method url-fetch) (uri (cran-uri "seriation" version)) (sha256 (base32 - "1zbdxq0s5rc5v307b69fw9k52m0654ls7pf22lh35ggirig6lwsk")))) + "1glxn098ar1v96xlwp85kjxzfd1nyfzp2f82x5z3fm87yv57k4lb")))) (build-system r-build-system) (propagated-inputs `(("r-cluster" ,r-cluster) -- cgit v1.2.3 From 5f777b5ff2b43275d75b3efff7be7158c02a5c5d Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Mon, 5 Oct 2020 22:12:56 +0200 Subject: gnu: r-xfun: Update to 0.18. * gnu/packages/cran.scm (r-xfun): Update to 0.18. --- gnu/packages/cran.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 5e475c5ca1..7c0bab2793 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -4560,13 +4560,13 @@ (define-public r-seriation (define-public r-xfun (package (name "r-xfun") - (version "0.17") + (version "0.18") (source (origin (method url-fetch) (uri (cran-uri "xfun" version)) (sha256 - (base32 "1zd5qi1rrz3b1lpisapa2yscanz39ghaamf28g7aq3z9ai2a2ymj")))) + (base32 "0iqh9b0a5wlc4lmqf7r169h4m2xji5l1viwwi47qf094rl5r3ddr")))) (build-system r-build-system) ;; knitr itself depends on xfun #; -- cgit v1.2.3 From 4cd4cf0925cbf4de5b991fcfc746f3b31b2ccd45 Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Mon, 5 Oct 2020 22:12:59 +0200 Subject: gnu: r-tinytex: Update to 0.26. * gnu/packages/cran.scm (r-tinytex): Update to 0.26. --- gnu/packages/cran.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 7c0bab2793..ca935648dd 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -4710,14 +4710,14 @@ (define-public r-uuid (define-public r-tinytex (package (name "r-tinytex") - (version "0.25") + (version "0.26") (source (origin (method url-fetch) (uri (cran-uri "tinytex" version)) (sha256 (base32 - "0zbhzxxjlkdj9byxyab477p7cnws5y87nyg989lkzarxdc7dglza")))) + "02b0v8ydbfspma3rgsdpkf2cm6jl9qm3l9jsrl0xng482b06bb0q")))) (build-system r-build-system) (propagated-inputs `(("r-xfun" ,r-xfun))) -- cgit v1.2.3 From e010576266220efa47572ef61b2f8c83d833c3b0 Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Mon, 5 Oct 2020 22:13:03 +0200 Subject: gnu: r-statnet-common: Update to 4.4.1. * gnu/packages/cran.scm (r-statnet-common): Update to 4.4.1. [propagated-inputs]: Add r-rle. --- gnu/packages/cran.scm | 7 ++++--- 1 file changed, 4 insertions(+), 3 deletions(-) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index ca935648dd..63e64758dc 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -4802,19 +4802,20 @@ (define-public r-rle (define-public r-statnet-common (package (name "r-statnet-common") - (version "4.3.0") + (version "4.4.1") (source (origin (method url-fetch) (uri (cran-uri "statnet.common" version)) (sha256 (base32 - "0ng90i0wm9wlyhjbnmnylc1bbqw396p1dr7f402dyry9x9ck6jl3")))) + "1z89an46xcl1d7dacj4irhk6pkajdz7v85b2347vczwdf622pksf")))) (properties `((upstream-name . "statnet.common"))) (build-system r-build-system) (propagated-inputs - `(("r-coda" ,r-coda))) + `(("r-coda" ,r-coda) + ("r-rle" ,r-rle))) (home-page "https://statnet.org") (synopsis "R scripts and utilities used by the Statnet software") (description "This package provides non-statistical utilities used by the -- cgit v1.2.3 From 6fbb3c9abe8b789bfed5071c2454fcac17e95a70 Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Mon, 5 Oct 2020 22:13:06 +0200 Subject: gnu: r-trend: Update to 1.1.4. * gnu/packages/cran.scm (r-trend): Update to 1.1.4. --- gnu/packages/cran.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 63e64758dc..4acfc09c7e 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -5227,14 +5227,14 @@ (define-public r-cubature (define-public r-trend (package (name "r-trend") - (version "1.1.3") + (version "1.1.4") (source (origin (method url-fetch) (uri (cran-uri "trend" version)) (sha256 (base32 - "0bj40acr1sc7vfxdcsdja3g28xsmrclmgb3n94p89gfjcgp8nv1d")))) + "1mr5g5gaxiqj6x83ngcbwwh57vhrhcz0x9dh0rmvs9y2ivk29ccs")))) (build-system r-build-system) (propagated-inputs `(("r-extradistr" ,r-extradistr))) -- cgit v1.2.3 From e3b821456bce7c0e0a535394e260c089f5c2ba32 Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Mon, 5 Oct 2020 22:13:11 +0200 Subject: gnu: r-import: Update to 1.2.0. * gnu/packages/cran.scm (r-import): Update to 1.2.0. [native-inputs]: Add r-knitr. --- gnu/packages/cran.scm | 6 ++++-- 1 file changed, 4 insertions(+), 2 deletions(-) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 4acfc09c7e..15cfa4ebe8 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -5497,15 +5497,17 @@ (define-public r-cgdsr (define-public r-import (package (name "r-import") - (version "1.1.0") + (version "1.2.0") (source (origin (method url-fetch) (uri (cran-uri "import" version)) (sha256 (base32 - "0blf9539rbfwcmw8zsb4k58slb4pdnc075v34vmyjw752fznhcji")))) + "018s0x224gqnv4cjfh0fwliyfg6ma9vslmwybrlizfsmqcc5wp37")))) (build-system r-build-system) + (native-inputs + `(("r-knitr" ,r-knitr))) (home-page "https://github.com/smbache/import") (synopsis "Import mechanism for R") (description -- cgit v1.2.3 From 794a6bc342356939507abe5306893a6c9e41c521 Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Mon, 5 Oct 2020 22:13:14 +0200 Subject: gnu: r-openxlsx: Update to 4.2.2. * gnu/packages/cran.scm (r-openxlsx): Update to 4.2.2. --- gnu/packages/cran.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 15cfa4ebe8..4fb9460bc9 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -6081,14 +6081,14 @@ (define-public r-zip (define-public r-openxlsx (package (name "r-openxlsx") - (version "4.1.5") + (version "4.2.2") (source (origin (method url-fetch) (uri (cran-uri "openxlsx" version)) (sha256 (base32 - "0wkpa3wsd8rs0pib7cp67iv0s6jn99frcrw7clypqxmvvdwyb9kq")))) + "12sjarcmbdww6jmkcqy8c6id94zv3lwmm15ns1y0xj3ipr8qmphb")))) (build-system r-build-system) (propagated-inputs `(("r-rcpp" ,r-rcpp) -- cgit v1.2.3 From 75c394abbffb7663e9fff7ed5df4c40ade73ba74 Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Mon, 5 Oct 2020 22:13:17 +0200 Subject: gnu: r-bibtex: Update to 0.4.2.3. * gnu/packages/cran.scm (r-bibtex): Update to 0.4.2.3. --- gnu/packages/cran.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 4fb9460bc9..4a5efd7a74 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -6416,14 +6416,14 @@ (define-public r-reticulate (define-public r-bibtex (package (name "r-bibtex") - (version "0.4.2.2") + (version "0.4.2.3") (source (origin (method url-fetch) (uri (cran-uri "bibtex" version)) (sha256 (base32 - "140hkjzdp3033cvji861rd06z1ixgpnn4n5amygqsmhnixk8ff07")))) + "0vdwx6808r73pk15263f33bkqbfmb08d8jkmr4d7h4ml414ikbbv")))) (build-system r-build-system) (propagated-inputs `(("r-stringr" ,r-stringr))) (home-page "https://github.com/romainfrancois/bibtex") -- cgit v1.2.3 From b8b75e46b517d208c86469941f5b630040f97b2e Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Mon, 5 Oct 2020 22:13:20 +0200 Subject: gnu: r-insight: Update to 0.9.6. * gnu/packages/cran.scm (r-insight): Update to 0.9.6. --- gnu/packages/cran.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 4a5efd7a74..f7bf271b4d 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -7154,14 +7154,14 @@ (define-public r-prediction (define-public r-insight (package (name "r-insight") - (version "0.9.5") + (version "0.9.6") (source (origin (method url-fetch) (uri (cran-uri "insight" version)) (sha256 (base32 - "0853kq4j8kic8z2gh5mxfqkwxjs4bdphlajzyvxka7af4r04bfmi")))) + "15mws316qfbq3nn6gb7s0m0a6jk2zi056g43yqiw4gp2ar92wd0h")))) (build-system r-build-system) (native-inputs `(("r-knitr" ,r-knitr))) -- cgit v1.2.3 From 5522640faf2ccc62fc0d5acdb9e6279d4ed0798a Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Mon, 5 Oct 2020 22:13:24 +0200 Subject: gnu: r-sjlabelled: Update to 1.1.7. * gnu/packages/cran.scm (r-sjlabelled): Update to 1.1.7. --- gnu/packages/cran.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index f7bf271b4d..241bc8d3dc 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -7182,14 +7182,14 @@ (define-public r-insight (define-public r-sjlabelled (package (name "r-sjlabelled") - (version "1.1.6") + (version "1.1.7") (source (origin (method url-fetch) (uri (cran-uri "sjlabelled" version)) (sha256 (base32 - "0xvb0yi7c7wiiqjbnbisyb2cjinm11i373jacfv1yzyc9cznzyzq")))) + "0d3fsjd2gxchv8mlx9l5pf8xvkmx4pgvizam83f3qss07bmvpzwg")))) (build-system r-build-system) (propagated-inputs `(("r-insight" ,r-insight))) -- cgit v1.2.3 From 0ac936ea21b6c41f59d3bc0a905a016a58ea1d69 Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Mon, 5 Oct 2020 22:13:27 +0200 Subject: gnu: r-deriv: Update to 4.1.0. * gnu/packages/cran.scm (r-deriv): Update to 4.1.0. --- gnu/packages/cran.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 241bc8d3dc..03d888f764 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -7510,14 +7510,14 @@ (define-public r-orddom (define-public r-deriv (package (name "r-deriv") - (version "4.0.1") + (version "4.1.0") (source (origin (method url-fetch) (uri (cran-uri "Deriv" version)) (sha256 (base32 - "16rq65x1xhxvqwn4p427divay3b9fgam2lxccxb8529adnrxmw6p")))) + "1n5d10g9qv4fvl8q0q6yc0mzdbba10jniid6k3br3bfqvdp2a4pq")))) (properties `((upstream-name . "Deriv"))) (build-system r-build-system) (home-page "https://cran.r-project.org/web/packages/Deriv") -- cgit v1.2.3 From 65f463d3d81f94c6b6fba5c7393d443137ae7542 Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Mon, 5 Oct 2020 22:13:30 +0200 Subject: gnu: r-sandwich: Update to 3.0-0. * gnu/packages/cran.scm (r-sandwich): Update to 3.0-0. --- gnu/packages/cran.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 03d888f764..8716e23544 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -8944,14 +8944,14 @@ (define-public r-aspi (define-public r-sandwich (package (name "r-sandwich") - (version "2.5-1") + (version "3.0-0") (source (origin (method url-fetch) (uri (cran-uri "sandwich" version)) (sha256 (base32 - "1mk685b9wq7k566pbml52rj96i5h6b3vf215k9picgmq296nzvyv")))) + "0afm6snak7r11dxyl3qirqdjah6d9pdv4afmxwam1nq9bqxyb3w2")))) (build-system r-build-system) (propagated-inputs `(("r-zoo" ,r-zoo))) -- cgit v1.2.3 From 336804fc1d86e954a2f8780f9991b6cbbf810eae Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Mon, 5 Oct 2020 22:13:33 +0200 Subject: gnu: r-multcomp: Update to 1.4-14. * gnu/packages/cran.scm (r-multcomp): Update to 1.4-14. --- gnu/packages/cran.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 8716e23544..ecc1d56596 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -8989,14 +8989,14 @@ (define-public r-th-data (define-public r-multcomp (package (name "r-multcomp") - (version "1.4-13") + (version "1.4-14") (source (origin (method url-fetch) (uri (cran-uri "multcomp" version)) (sha256 (base32 - "1nszi22rcc551yc75h9cdfkdqsxw1rz30vadazmpyzihp1bh63yk")))) + "14a55isy1sp745s109nirlk5fryy144cri6dl8y9d9wjhfxz336a")))) (build-system r-build-system) (propagated-inputs `(("r-codetools" ,r-codetools) -- cgit v1.2.3 From d7beb6da1c997adf9088c88e7f635e7771fd45d7 Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Mon, 5 Oct 2020 22:13:36 +0200 Subject: gnu: r-emmeans: Update to 1.5.1. * gnu/packages/cran.scm (r-emmeans): Update to 1.5.1. --- gnu/packages/cran.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index ecc1d56596..8d9815b56d 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -9017,14 +9017,14 @@ (define-public r-multcomp (define-public r-emmeans (package (name "r-emmeans") - (version "1.5.0") + (version "1.5.1") (source (origin (method url-fetch) (uri (cran-uri "emmeans" version)) (sha256 (base32 - "09nap4aazpbsswqzk0d4kjngwd8sib222s31yd08sd1sqw432c6k")))) + "05z3vvykn56g50zhzsphdhfjzdw8g8xfindcas08hbhv5y7izhs8")))) (build-system r-build-system) (propagated-inputs `(("r-estimability" ,r-estimability) -- cgit v1.2.3 From 08f7d7d71b7b842d039a0d014e09da047f7d91b8 Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Mon, 5 Oct 2020 22:13:39 +0200 Subject: gnu: r-effectsize: Update to 0.3.3. * gnu/packages/cran.scm (r-effectsize): Update to 0.3.3. --- gnu/packages/cran.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 8d9815b56d..918f13ac46 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -9337,14 +9337,14 @@ (define-public r-ggeffects (define-public r-effectsize (package (name "r-effectsize") - (version "0.3.2") + (version "0.3.3") (source (origin (method url-fetch) (uri (cran-uri "effectsize" version)) (sha256 (base32 - "0h9f260gb8707pcssf8dq7dakpq1ggkxr5kpbrbl8sn8h3qbvws9")))) + "00c9j6lc58ls1vrwlpzk3h1lgvxpkcrh7b4ym6kmy4fg4f08izp7")))) (properties `((upstream-name . "effectsize"))) (build-system r-build-system) (propagated-inputs -- cgit v1.2.3 From aed63a8731e4b857c65bf4abcb18a8e0ce1ba4eb Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Mon, 5 Oct 2020 22:13:43 +0200 Subject: gnu: r-sjplot: Update to 2.8.5. * gnu/packages/cran.scm (r-sjplot): Update to 2.8.5. --- gnu/packages/cran.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 918f13ac46..b953b64f42 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -9364,13 +9364,13 @@ (define-public r-effectsize (define-public r-sjplot (package (name "r-sjplot") - (version "2.8.4") + (version "2.8.5") (source (origin (method url-fetch) (uri (cran-uri "sjPlot" version)) (sha256 - (base32 "0b7k0mshkk8k26w11xbxkb5v0klhq279zn2xdz83cn8k791xkqyd")))) + (base32 "07fwa6ga9430irk68g9wcfpn9g24pf8qc2i127nrydm865y7ri24")))) (properties `((upstream-name . "sjPlot"))) (build-system r-build-system) (propagated-inputs -- cgit v1.2.3 From bc249d37d9d73ad0ccca3728a0b82fd6eb147c2d Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Mon, 5 Oct 2020 22:13:46 +0200 Subject: gnu: r-usethis: Update to 1.6.3. * gnu/packages/cran.scm (r-usethis): Update to 1.6.3. --- gnu/packages/cran.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index b953b64f42..d88bf77ee4 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -9494,14 +9494,14 @@ (define-public r-clisymbols (define-public r-usethis (package (name "r-usethis") - (version "1.6.1") + (version "1.6.3") (source (origin (method url-fetch) (uri (cran-uri "usethis" version)) (sha256 (base32 - "0vwxsnq615mwc706a4a71gyy0hmvnllbh249gzm7vl3ym5cr0cv0")))) + "09lk04kycvf5x9ggrb6pwc7bx5mzqxwialm2w9vn1a0w0gh2gcfc")))) (build-system r-build-system) (propagated-inputs `(("r-cli" ,r-cli) -- cgit v1.2.3 From f7730afb5e0b453013e434b46cf9f504fb420c42 Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Mon, 5 Oct 2020 22:13:49 +0200 Subject: gnu: r-lsei: Update to 1.3-0. * gnu/packages/cran.scm (r-lsei): Update to 1.3-0. --- gnu/packages/cran.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index d88bf77ee4..c86e59ea50 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -9717,14 +9717,14 @@ (define-public r-summarytools (define-public r-lsei (package (name "r-lsei") - (version "1.2-0.1") + (version "1.3-0") (source (origin (method url-fetch) (uri (cran-uri "lsei" version)) (sha256 (base32 - "1rvzdb33x9ykl5qfwxkps1iylxqzlf1qla3l88420nbq7pxp7m87")))) + "1dka0rigfw4vj809qma2dkiwjb3nw5635ynnba5cm299cn7hb2b2")))) (build-system r-build-system) (native-inputs `(("gfortran" ,gfortran))) -- cgit v1.2.3 From 7e0e3a6512393b6a5fdf5ac7cdddf10a27bf7c2f Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Mon, 5 Oct 2020 22:13:52 +0200 Subject: gnu: r-npsurv: Update to 0.5-0. * gnu/packages/cran.scm (r-npsurv): Update to 0.5-0. --- gnu/packages/cran.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index c86e59ea50..12426e5a90 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -9740,14 +9740,14 @@ (define-public r-lsei (define-public r-npsurv (package (name "r-npsurv") - (version "0.4-0.1") + (version "0.5-0") (source (origin (method url-fetch) (uri (cran-uri "npsurv" version)) (sha256 (base32 - "09nxibp93bp9v8qcx0gnazk7fkvyh0fq9vlgxl639m6ndr7fwp88")))) + "1ihxhb42cga1hssj2jv4ah0f4hlwsky899ij5261fzh1wxvdp1xw")))) (build-system r-build-system) (propagated-inputs `(("r-lsei" ,r-lsei))) -- cgit v1.2.3 From f273105b748c51ae242290355cfa4bc4ce46cb39 Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Mon, 5 Oct 2020 22:13:56 +0200 Subject: gnu: r-afex: Update to 0.28-0. * gnu/packages/cran.scm (r-afex): Update to 0.28-0. --- gnu/packages/cran.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 12426e5a90..b512958bed 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -9857,14 +9857,14 @@ (define-public r-mvabund (define-public r-afex (package (name "r-afex") - (version "0.27-2") + (version "0.28-0") (source (origin (method url-fetch) (uri (cran-uri "afex" version)) (sha256 (base32 - "0qsmcddy4449qjj3ajmqvdiqdkhkswmz5dqf150wxwq897p3bvf2")))) + "0c47bq2llzw2b4avhkxyhmf1m2zjh9jsjiw2kww9n1bhwqsyr4ci")))) (build-system r-build-system) (propagated-inputs `(("r-car" ,r-car) -- cgit v1.2.3 From 405c7e65508a1078b5d22290bf94949adb47cb31 Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Mon, 5 Oct 2020 22:13:59 +0200 Subject: gnu: r-fftwtools: Update to 0.9-9. * gnu/packages/cran.scm (r-fftwtools): Update to 0.9-9. --- gnu/packages/cran.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index b512958bed..d538607fd7 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -10439,14 +10439,14 @@ (define-public r-softimpute (define-public r-fftwtools (package (name "r-fftwtools") - (version "0.9-8") + (version "0.9-9") (source (origin (method url-fetch) (uri (cran-uri "fftwtools" version)) (sha256 (base32 - "1nqvpzda281rxi1cmwajxxsn3sc3gz7scv8bvs5jm34kf36whha6")))) + "0h8lyl2i6zq16ir7xnfj9dhyivxvwikm8lml19s8s8jx95z3n9x9")))) (build-system r-build-system) (inputs `(("fftw" ,fftw))) (home-page "https://github.com/krahim/fftwtools") -- cgit v1.2.3 From 876a326a0f3a7c4651894c513065d1427f988ad7 Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Mon, 5 Oct 2020 22:14:02 +0200 Subject: gnu: r-bigrquery: Update to 1.3.2. * gnu/packages/cran.scm (r-bigrquery): Update to 1.3.2. --- gnu/packages/cran.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index d538607fd7..1178e45e11 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -11405,14 +11405,14 @@ (define-public r-gargle (define-public r-bigrquery (package (name "r-bigrquery") - (version "1.3.1") + (version "1.3.2") (source (origin (method url-fetch) (uri (cran-uri "bigrquery" version)) (sha256 (base32 - "0mq03sqv5lkyn3dlxvyd6lqqwnryfdaqh05pjvngzp194fxmd9cy")))) + "16whccv7f94vf57dvbbrhdskz3nnbmpa11a14kp7aynckldlfy0v")))) (build-system r-build-system) (propagated-inputs `(("r-assertthat" ,r-assertthat) -- cgit v1.2.3 From 79f1b40303bc42db25bc1455e2fd7b9d365754b8 Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Mon, 5 Oct 2020 22:14:05 +0200 Subject: gnu: r-gmp: Update to 0.6-1. * gnu/packages/cran.scm (r-gmp): Update to 0.6-1. --- gnu/packages/cran.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 1178e45e11..75c361c856 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -11438,14 +11438,14 @@ (define-public r-bigrquery (define-public r-gmp (package (name "r-gmp") - (version "0.6-0") + (version "0.6-1") (source (origin (method url-fetch) (uri (cran-uri "gmp" version)) (sha256 (base32 - "1c9vpr6j6h5f6dm9l535nscl66rvr8sba5az2kswjhmzwb9xpjxc")))) + "11rl7qmfrpp1974f0vzsi3zjyx147wlb82ydxak2b60khfvhrn90")))) (build-system r-build-system) (arguments '(#:phases -- cgit v1.2.3 From 882ae6dcaa103feabf56dbcef041743e362d6543 Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Mon, 5 Oct 2020 22:14:08 +0200 Subject: gnu: r-fields: Update to 11.5. * gnu/packages/cran.scm (r-fields): Update to 11.5. --- gnu/packages/cran.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 75c361c856..25631d768c 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -11963,13 +11963,13 @@ (define-public r-spam (define-public r-fields (package (name "r-fields") - (version "11.4") + (version "11.5") (source (origin (method url-fetch) (uri (cran-uri "fields" version)) (sha256 - (base32 "0x8hbl0rn7gnhn7w45wd757g9in27884qr6vy30xrk150qaq941y")))) + (base32 "1mgg5l6w4yvz7cccgfz3h19k11ng1s1hy26rl2h215gnfb24mnga")))) (build-system r-build-system) (propagated-inputs `(("r-maps" ,r-maps) -- cgit v1.2.3 From b4c0634116302b1ade051583f399ff49a9d47237 Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Mon, 5 Oct 2020 22:14:11 +0200 Subject: gnu: r-spatialextremes: Update to 2.0-9. * gnu/packages/cran.scm (r-spatialextremes): Update to 2.0-9. --- gnu/packages/cran.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 25631d768c..1a91789d26 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -11988,14 +11988,14 @@ (define-public r-fields (define-public r-spatialextremes (package (name "r-spatialextremes") - (version "2.0-8") + (version "2.0-9") (source (origin (method url-fetch) (uri (cran-uri "SpatialExtremes" version)) (sha256 (base32 - "0r2byz5xxc46zqnigdax28q7446ibmzmsmi10lmm2hdks3ml6sl3")))) + "1mhn1c8n3bmgf0fjyac3wji4790zswzkqliqcv3n8kv9806crb0y")))) (properties `((upstream-name . "SpatialExtremes"))) (build-system r-build-system) -- cgit v1.2.3 From eae0e04a281bab62c65d7ac77cfe53837eebf173 Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Mon, 5 Oct 2020 22:14:14 +0200 Subject: gnu: r-globals: Update to 0.13.0. * gnu/packages/cran.scm (r-globals): Update to 0.13.0. --- gnu/packages/cran.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 1a91789d26..21fef41589 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -12412,14 +12412,14 @@ (define-public r-listenv (define-public r-globals (package (name "r-globals") - (version "0.12.5") + (version "0.13.0") (source (origin (method url-fetch) (uri (cran-uri "globals" version)) (sha256 (base32 - "1ha8iasgijp4q3v2b0b17y1wh7cd3nvzd9b03w49qm2bidkaf68m")))) + "0gqh7dbd38wqyjy9qm85v5k60vld97pyc46wf4xkgi4mr7y0ixg3")))) (build-system r-build-system) (propagated-inputs `(("r-codetools" ,r-codetools))) -- cgit v1.2.3 From 112947d1c66ef2487a0eca7ce2d3a5114d97ac77 Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Mon, 5 Oct 2020 22:14:18 +0200 Subject: gnu: r-future: Update to 1.19.1. * gnu/packages/cran.scm (r-future): Update to 1.19.1. --- gnu/packages/cran.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 21fef41589..208ed84786 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -12436,14 +12436,14 @@ (define-public r-globals (define-public r-future (package (name "r-future") - (version "1.18.0") + (version "1.19.1") (source (origin (method url-fetch) (uri (cran-uri "future" version)) (sha256 (base32 - "01fp8kgjf0k6c83q1w3dy9z90g72cc9d0004d1qw6n1j65nwxg4f")))) + "12f483h7g172ygafbg7h43vykv0f7xz9miwqf5q8dyv7gpgqi5fl")))) (build-system r-build-system) (propagated-inputs `(("r-digest" ,r-digest) -- cgit v1.2.3 From 53e2817fa949de39a9cf27b201d67f3f825da27c Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Mon, 5 Oct 2020 22:44:06 +0200 Subject: gnu: r-colourpicker: Update to 1.1.0. * gnu/packages/cran.scm (r-colourpicker): Update to 1.1.0. [native-inputs]: Add r-knitr. --- gnu/packages/cran.scm | 7 ++++--- 1 file changed, 4 insertions(+), 3 deletions(-) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 208ed84786..13b8a1f6ca 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -12915,14 +12915,14 @@ (define-public r-shinyjs (define-public r-colourpicker (package (name "r-colourpicker") - (version "1.0") + (version "1.1.0") (source (origin (method url-fetch) (uri (cran-uri "colourpicker" version)) (sha256 (base32 - "0z3v2083g7kwdp21x9s2n1crfh24agpdq3yxkcdzc2awn2pwpnpi")))) + "1qjispj7i12m02js5cm5xlgn5lyff0kc5ybz6lbknz8q5lkbdyrd")))) (build-system r-build-system) (arguments `(#:modules ((guix build utils) @@ -12963,7 +12963,8 @@ (define-public r-colourpicker ("r-shiny" ,r-shiny) ("r-shinyjs" ,r-shinyjs))) (native-inputs - `(("uglify-js" ,uglify-js) + `(("r-knitr" ,r-knitr) + ("uglify-js" ,uglify-js) ("js-jquery" ,(origin (method url-fetch) -- cgit v1.2.3 From 3a2f2219b296cdfd985f4015a3eb1f9eeeed3693 Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Mon, 5 Oct 2020 22:44:09 +0200 Subject: gnu: r-pegas: Update to 0.14. * gnu/packages/cran.scm (r-pegas): Update to 0.14. --- gnu/packages/cran.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 13b8a1f6ca..b014deecdb 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -14056,13 +14056,13 @@ (define-public r-adegenet (define-public r-pegas (package (name "r-pegas") - (version "0.13") + (version "0.14") (source (origin (method url-fetch) (uri (cran-uri "pegas" version)) (sha256 - (base32 "002i7s4g0nhnq0v05gs0yssqiyhpq2f7rw2rhn31hsbgxc86frvy")))) + (base32 "0lr06gajzdanj8ax91kgpxsj863m367v2s1z5gnxps3999n0xybx")))) (build-system r-build-system) (propagated-inputs `(("r-adegenet" ,r-adegenet) -- cgit v1.2.3 From 0532a4fd1e0acb2434e2d899d6be20941e2d9aed Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Mon, 5 Oct 2020 22:44:13 +0200 Subject: gnu: r-msigdbr: Update to 7.2.1. * gnu/packages/cran.scm (r-msigdbr): Update to 7.2.1. [propagated-inputs]: Add r-tidyselect. --- gnu/packages/cran.scm | 7 ++++--- 1 file changed, 4 insertions(+), 3 deletions(-) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index b014deecdb..19c4d339a8 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -14820,20 +14820,21 @@ (define-public r-xkcd (define-public r-msigdbr (package (name "r-msigdbr") - (version "7.1.1") + (version "7.2.1") (source (origin (method url-fetch) (uri (cran-uri "msigdbr" version)) (sha256 (base32 - "0jvi49qa7616s58p0rx66pcw7h12rc8kgcg9225jk7pc3934hnzh")))) + "1rc2p9vw57pn4prmfgay4w18qd53ggq7wxfsi9kp7w25ciip1dq1")))) (build-system r-build-system) (propagated-inputs `(("r-dplyr" ,r-dplyr) ("r-magrittr" ,r-magrittr) ("r-rlang" ,r-rlang) - ("r-tibble" ,r-tibble))) + ("r-tibble" ,r-tibble) + ("r-tidyselect" ,r-tidyselect))) (native-inputs `(("r-knitr" ,r-knitr))) (home-page "https://github.com/igordot/msigdbr") -- cgit v1.2.3 From 4c40cd72e6f82987182514c5a83990e75ca15553 Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Mon, 5 Oct 2020 22:44:16 +0200 Subject: gnu: r-ggvis: Update to 0.4.6. * gnu/packages/cran.scm (r-ggvis): Update to 0.4.6. --- gnu/packages/cran.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 19c4d339a8..ce8d74a3e6 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -15211,14 +15211,14 @@ (define-public r-rda (define-public r-ggvis (package (name "r-ggvis") - (version "0.4.5") + (version "0.4.6") (source (origin (method url-fetch) (uri (cran-uri "ggvis" version)) (sha256 (base32 - "091i9f17912j8qcyxppjgwzjnyqj7769ixs9d2gjg6f2clskqdw2")))) + "1k40mkfxj66qvwbsp849maihv6vxkdprhhzjkwffwn0lwl78lsz1")))) (build-system r-build-system) (propagated-inputs `(("r-assertthat" ,r-assertthat) -- cgit v1.2.3 From 6f44e14b0f4f1bfc9f548c2d78eb9b0f85779e22 Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Mon, 5 Oct 2020 22:44:20 +0200 Subject: gnu: r-sctransform: Update to 0.3. * gnu/packages/cran.scm (r-sctransform): Update to 0.3. [propagated-inputs]: Add r-future. --- gnu/packages/cran.scm | 7 ++++--- 1 file changed, 4 insertions(+), 3 deletions(-) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index ce8d74a3e6..4884c6d242 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -15748,17 +15748,18 @@ (define-public r-lintr (define-public r-sctransform (package (name "r-sctransform") - (version "0.2.1") + (version "0.3") (source (origin (method url-fetch) (uri (cran-uri "sctransform" version)) (sha256 (base32 - "07v3lzccsrkh1glfxd1q20r8f8gl9ls5az0s1dvxm4vcls0hlhyn")))) + "1vyjxzghfvw57pwncvkfg3lbcsqfdsiplh1h4vscxpnd3872nrq3")))) (build-system r-build-system) (propagated-inputs - `(("r-future-apply" ,r-future-apply) + `(("r-future" ,r-future) + ("r-future-apply" ,r-future-apply) ("r-ggplot2" ,r-ggplot2) ("r-gridextra" ,r-gridextra) ("r-mass" ,r-mass) -- cgit v1.2.3 From 57d41e9045496be0ded4cac592fa51db9feb8dfc Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Mon, 5 Oct 2020 22:44:23 +0200 Subject: gnu: r-ggfortify: Update to 0.4.11. * gnu/packages/cran.scm (r-ggfortify): Update to 0.4.11. --- gnu/packages/cran.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 4884c6d242..226524a7de 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -16168,14 +16168,14 @@ (define-public r-plot3d (define-public r-ggfortify (package (name "r-ggfortify") - (version "0.4.10") + (version "0.4.11") (source (origin (method url-fetch) (uri (cran-uri "ggfortify" version)) (sha256 (base32 - "0wmcwp63h90v3f00ixszvis4z28im621jickvc0wgi6qvjvnayq0")))) + "1wfm7l9bz6msh7rflgfv9dgbxh1ikz2ay0v7sgk9nkc24y6lhbpk")))) (build-system r-build-system) (propagated-inputs `(("r-dplyr" ,r-dplyr) -- cgit v1.2.3 From 2cab0e12b4bab3f79f11cf89598bcd8b167e5ba5 Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Mon, 5 Oct 2020 22:44:27 +0200 Subject: gnu: r-covr: Update to 3.5.1. * gnu/packages/cran.scm (r-covr): Update to 3.5.1. --- gnu/packages/cran.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 226524a7de..21e96553cc 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -16652,13 +16652,13 @@ (define-public r-harmony (define-public r-covr (package (name "r-covr") - (version "3.5.0") + (version "3.5.1") (source (origin (method url-fetch) (uri (cran-uri "covr" version)) (sha256 - (base32 "1pvr95h7jg9hqq1qq1cccy323pkxldrwafl08151cc410499k4fb")))) + (base32 "0v5cv3cw2kpdr6wxmkbd3wclavr17zipypdcb10hhmpa4cvgqk55")))) (properties `((upstream-name . "covr"))) (build-system r-build-system) (propagated-inputs -- cgit v1.2.3 From 158e72308dc0d0b4af1c99ad0b542601f69a7543 Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Mon, 5 Oct 2020 22:44:30 +0200 Subject: gnu: r-systemfonts: Update to 0.3.2. * gnu/packages/cran.scm (r-systemfonts): Update to 0.3.2. --- gnu/packages/cran.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 21e96553cc..743469d926 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -16685,14 +16685,14 @@ (define-public r-covr (define-public r-systemfonts (package (name "r-systemfonts") - (version "0.3.1") + (version "0.3.2") (source (origin (method url-fetch) (uri (cran-uri "systemfonts" version)) (sha256 (base32 - "0ldxgcayyisp2gcbv4xw9zpb48bp4czi8016kq5nqdqhv1qb3sz0")))) + "12hdvv66kkd3b4rs82blc3c4ifz2dw1048sqpkbz6vkk1zqpc53x")))) (properties `((upstream-name . "systemfonts"))) (build-system r-build-system) (propagated-inputs -- cgit v1.2.3 From 50946de9b1dc4b028d16feec85e45f9525657e82 Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Mon, 5 Oct 2020 22:44:33 +0200 Subject: gnu: r-parameters: Update to 0.8.6. * gnu/packages/cran.scm (r-parameters): Update to 0.8.6. --- gnu/packages/cran.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 743469d926..d5754cc899 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -16833,14 +16833,14 @@ (define-public r-assertr (define-public r-parameters (package (name "r-parameters") - (version "0.8.5") + (version "0.8.6") (source (origin (method url-fetch) (uri (cran-uri "parameters" version)) (sha256 (base32 - "1vax5p1znq2ddbks2i614hbrnn2x6x71942xx49p813qk8dh284l")))) + "0z4qy62pxiwnsgi77ydymlc12ss9p9gbqljik2h0rwlmkpmk016w")))) (properties `((upstream-name . "parameters"))) (build-system r-build-system) (propagated-inputs -- cgit v1.2.3 From e29530c2d8bc6b6de46d663b0d7e9087d4a30ff6 Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Mon, 5 Oct 2020 22:44:36 +0200 Subject: gnu: r-bios2cor: Update to 2.2. * gnu/packages/cran.scm (r-bios2cor): Update to 2.2. --- gnu/packages/cran.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index d5754cc899..027a6dc1d3 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -17116,14 +17116,14 @@ (define-public r-bio3d (define-public r-bios2cor (package (name "r-bios2cor") - (version "2.1") + (version "2.2") (source (origin (method url-fetch) (uri (cran-uri "Bios2cor" version)) (sha256 (base32 - "04wk1cjrrxhpv1kdhd67r1qvjv268xxi0z0r105wy912110z9m6x")))) + "1wkj9vr33m9jilidil9jpw5rzr3pf7gkimxdvch22ks4bgkx7l1w")))) (properties `((upstream-name . "Bios2cor"))) (build-system r-build-system) (propagated-inputs -- cgit v1.2.3 From dd91969866db94478eb5a1c22a76a1327128b50a Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Mon, 5 Oct 2020 22:44:39 +0200 Subject: gnu: r-lhs: Update to 1.1.1. * gnu/packages/cran.scm (r-lhs): Update to 1.1.1. --- gnu/packages/cran.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 027a6dc1d3..7bd09a9cec 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -18021,14 +18021,14 @@ (define-public r-randtoolbox (define-public r-lhs (package (name "r-lhs") - (version "1.0.2") + (version "1.1.1") (source (origin (method url-fetch) (uri (cran-uri "lhs" version)) (sha256 (base32 - "0n0i1hr9gmc0hfcs2cvpjvdfgm6k26rhcq3q22r8ic0gfj953572")))) + "1p4h03qlijs2a59wfd4rlvdlb9i87pw2zm8xsjd6yzz8vlm9yglh")))) (properties `((upstream-name . "lhs"))) (build-system r-build-system) (propagated-inputs `(("r-rcpp" ,r-rcpp))) -- cgit v1.2.3 From f3f0a6c138ae80157bbc9459faee54cd50523c9f Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Mon, 5 Oct 2020 22:44:42 +0200 Subject: gnu: r-acebayes: Update to 1.10. * gnu/packages/cran.scm (r-acebayes): Update to 1.10. --- gnu/packages/cran.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 7bd09a9cec..21d27e0556 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -18044,14 +18044,14 @@ (define-public r-lhs (define-public r-acebayes (package (name "r-acebayes") - (version "1.9") + (version "1.10") (source (origin (method url-fetch) (uri (cran-uri "acebayes" version)) (sha256 (base32 - "1imfwm1vpbb24vfmfn1nljhmaz8429mwjihw34892p387s8h7xz2")))) + "11bffz430gdfdaxjx3simig66vhynmx6l1ylac4q2shcmj52nx73")))) (properties `((upstream-name . "acebayes"))) (build-system r-build-system) (propagated-inputs -- cgit v1.2.3 From 2959b3597aeddb1f4ba6ac66f2d39b373d3b10b7 Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Mon, 5 Oct 2020 22:44:45 +0200 Subject: gnu: r-diagram: Update to 1.6.5. * gnu/packages/cran.scm (r-diagram): Update to 1.6.5. --- gnu/packages/cran.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 21d27e0556..0f34c4c5c2 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -19900,14 +19900,14 @@ (define-public r-poibin (define-public r-diagram (package (name "r-diagram") - (version "1.6.4") + (version "1.6.5") (source (origin (method url-fetch) (uri (cran-uri "diagram" version)) (sha256 (base32 - "0f6ffprn5k0ir1s7m9s7izc64aa17r3gnygagz5bihrlsvawaavw")))) + "1r3lyl0h7mk9cfg8smr3jydfkjdawaphnxibkxfjqa7029vkxh79")))) (properties `((upstream-name . "diagram"))) (build-system r-build-system) (propagated-inputs -- cgit v1.2.3 From cb347b2cbff8da1e6868c4eafe0025239de14f54 Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Mon, 5 Oct 2020 22:44:49 +0200 Subject: gnu: r-quanteda: Update to 2.1.2. * gnu/packages/cran.scm (r-quanteda): Update to 2.1.2. --- gnu/packages/cran.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 0f34c4c5c2..629332b459 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -20478,14 +20478,14 @@ (define-public r-snowballc (define-public r-quanteda (package (name "r-quanteda") - (version "2.1.1") + (version "2.1.2") (source (origin (method url-fetch) (uri (cran-uri "quanteda" version)) (sha256 (base32 - "1wlrd7g2b459pnkqhihxhn74f37py1c9pxrdzp5xzp4mnbdxcsj8")))) + "13rjwgmg5v1dbryrs9ifyy76s5ib6wrbrm2y5af44vhf1h6p9cvy")))) (properties `((upstream-name . "quanteda"))) (build-system r-build-system) (propagated-inputs -- cgit v1.2.3 From b68f77fc8dfd4e3d7b10b291e2ed2386dda5b46c Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Mon, 5 Oct 2020 22:44:52 +0200 Subject: gnu: r-stm: Update to 1.3.6. * gnu/packages/cran.scm (r-stm): Update to 1.3.6. --- gnu/packages/cran.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 629332b459..456e948916 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -20554,14 +20554,14 @@ (define-public r-topicmodels (define-public r-stm (package (name "r-stm") - (version "1.3.5") + (version "1.3.6") (source (origin (method url-fetch) (uri (cran-uri "stm" version)) (sha256 (base32 - "1yyfxaxqc6yq0yq68zhdnhpwpvsyp71dlmivn7zxixfmp932s6cn")))) + "0qwq4nin2n9fjd06852r8k7arvcgh46kcfb3lm21swgx6j8bgrhb")))) (properties `((upstream-name . "stm"))) (build-system r-build-system) (propagated-inputs -- cgit v1.2.3 From 860841b7ffd7f5f0782f468af516bad560e9211f Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Mon, 5 Oct 2020 22:44:56 +0200 Subject: gnu: r-regsem: Update to 1.6.2. * gnu/packages/cran.scm (r-regsem): Update to 1.6.2. [native-inputs]: Add r-knitr. --- gnu/packages/cran.scm | 6 ++++-- 1 file changed, 4 insertions(+), 2 deletions(-) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 456e948916..2a67f1feb6 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -20763,14 +20763,14 @@ (define-public r-semtools (define-public r-regsem (package (name "r-regsem") - (version "1.5.2") + (version "1.6.2") (source (origin (method url-fetch) (uri (cran-uri "regsem" version)) (sha256 (base32 - "0ch057010xfsw0nqcsarzakdbiplvxaldyqlbbacspqs65ax1yk7")))) + "14nrzyrkrijdrr4jwkri5zra2wh36w68wy6xs600l2z1633h2lmn")))) (properties `((upstream-name . "regsem"))) (build-system r-build-system) (propagated-inputs @@ -20778,6 +20778,8 @@ (define-public r-regsem ("r-rcpp" ,r-rcpp) ("r-rcpparmadillo" ,r-rcpparmadillo) ("r-rsolnp" ,r-rsolnp))) + (native-inputs + `(("r-knitr" ,r-knitr))) (home-page "https://cran.r-project.org/package=regsem") (synopsis "Regularized structural equation modeling") (description -- cgit v1.2.3 From e05869ba23145308668781449a416802bfc3b353 Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Mon, 5 Oct 2020 22:44:59 +0200 Subject: gnu: r-rpf: Update to 1.0.5. * gnu/packages/cran.scm (r-rpf): Update to 1.0.5. --- gnu/packages/cran.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 2a67f1feb6..c6fec96334 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -20834,14 +20834,14 @@ (define-public r-stanheaders (define-public r-rpf (package (name "r-rpf") - (version "1.0.4") + (version "1.0.5") (source (origin (method url-fetch) (uri (cran-uri "rpf" version)) (sha256 (base32 - "17crcgsbcsh0c00n7bgdqfnd7n1vzz7drfxjs7d18253yl5x44pl")))) + "0kz7i7g3l16irz6bxgnkxdmmd931m1fk6rl72dvs21ir5brr010l")))) (properties `((upstream-name . "rpf"))) (build-system r-build-system) (propagated-inputs -- cgit v1.2.3 From 56e52ad97d7d8c761ab39cbb853e9bcddff91802 Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Mon, 5 Oct 2020 22:45:02 +0200 Subject: gnu: r-aws: Update to 2.5. * gnu/packages/cran.scm (r-aws): Update to 2.5. --- gnu/packages/cran.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index c6fec96334..7efb3e9f28 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -22169,14 +22169,14 @@ (define-public r-awsmethods (define-public r-aws (package (name "r-aws") - (version "2.4-3") + (version "2.5") (source (origin (method url-fetch) (uri (cran-uri "aws" version)) (sha256 (base32 - "0ccm8ffjf8bylhfr64j9wzi49hzigz4bs172pvkb0bi4d5vdr0l5")))) + "1mwg1q7l4a07g5aa9c6kh3fpl9lakk01pbzlk7ixbpy12yfvj9nm")))) (properties `((upstream-name . "aws"))) (build-system r-build-system) -- cgit v1.2.3 From 34c8d0df591f2cbd7b925872ccf7e060a833c172 Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Mon, 5 Oct 2020 22:45:06 +0200 Subject: gnu: r-rxnat: Update to 1.0.14. * gnu/packages/cran.scm (r-rxnat): Update to 1.0.14. [propagated-inputs]: Add r-tibble. --- gnu/packages/cran.scm | 7 ++++--- 1 file changed, 4 insertions(+), 3 deletions(-) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 7efb3e9f28..c8affd2810 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -22333,21 +22333,22 @@ (define-public r-rcdd (define-public r-rxnat (package (name "r-rxnat") - (version "1.0.12") + (version "1.0.14") (source (origin (method url-fetch) (uri (cran-uri "Rxnat" version)) (sha256 (base32 - "06w99b5lvpycykzlga6grw33zkajwbb04s89s37wy9zxy42vc4cb")))) + "00fl68pa0c2vy4xlny67pn41lzgm7b97wgg3dwm6z35izca62l11")))) (properties `((upstream-name . "Rxnat"))) (build-system r-build-system) (propagated-inputs `(("r-dplyr" ,r-dplyr) ("r-httr" ,r-httr) - ("r-rcurl" ,r-rcurl))) + ("r-rcurl" ,r-rcurl) + ("r-tibble" ,r-tibble))) (native-inputs `(("r-knitr" ,r-knitr))) (home-page "https://cran.r-project.org/web/packages/Rxnat/") -- cgit v1.2.3 From ad3f4b13eb1beca50b0cc76eff7af5dd5388ef71 Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Mon, 5 Oct 2020 22:45:09 +0200 Subject: gnu: r-binman: Update to 0.1.2. * gnu/packages/cran.scm (r-binman): Update to 0.1.2. --- gnu/packages/cran.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index c8affd2810..acc91ad42d 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -22738,14 +22738,14 @@ (define-public r-semver (define-public r-binman (package (name "r-binman") - (version "0.1.1") + (version "0.1.2") (source (origin (method url-fetch) (uri (cran-uri "binman" version)) (sha256 (base32 - "0hm0h285p4v9lhrqjy8s22f1s1vmfpfla5iaycpj8vw3qb3632az")))) + "00l7m98h41r67gf0qxqis3vx63j7wylnk9vlgcyk41szkrz8ikkc")))) (properties `((upstream-name . "binman"))) (build-system r-build-system) (propagated-inputs -- cgit v1.2.3 From aac676e996a49f267d3c617f763829462404dbff Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Mon, 5 Oct 2020 22:45:13 +0200 Subject: gnu: r-gaston: Update to 1.5.7. * gnu/packages/cran.scm (r-gaston): Update to 1.5.7. --- gnu/packages/cran.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index acc91ad42d..7b088cec0b 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -23090,14 +23090,14 @@ (define-public r-spatstat (define-public r-gaston (package (name "r-gaston") - (version "1.5.6") + (version "1.5.7") (source (origin (method url-fetch) (uri (cran-uri "gaston" version)) (sha256 (base32 - "1bx6iqfjb9lf3vn0z7v8wjv9m7issvqsnymm4qsgl3622s6qz6rg")))) + "14z94dpln4dvgrv2w7w9ik7h6rpvbf02qhq1hqzx8c2cndzxr21i")))) (properties `((upstream-name . "gaston"))) (build-system r-build-system) (inputs `(("zlib" ,zlib))) -- cgit v1.2.3 From 31a97a662aa10c8a68379d57c495b9637e20b494 Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Mon, 5 Oct 2020 22:45:16 +0200 Subject: gnu: r-cpp11: Update to 0.2.2. * gnu/packages/cran.scm (r-cpp11): Update to 0.2.2. --- gnu/packages/cran.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 7b088cec0b..8edfc9bbab 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -23118,14 +23118,14 @@ (define-public r-gaston (define-public r-cpp11 (package (name "r-cpp11") - (version "0.2.1") + (version "0.2.2") (source (origin (method url-fetch) (uri (cran-uri "cpp11" version)) (sha256 (base32 - "1113y61lj4cg1d2yjavdx9zih5rzb4pnxmj5v3sr4bhzlxz2scda")))) + "1b1h7kjl3xrd4nfly7wd6v8mbyancm632r4k37pafs8xi6cqm848")))) (properties `((upstream-name . "cpp11"))) (build-system r-build-system) (native-inputs `(("r-knitr" ,r-knitr))) -- cgit v1.2.3 From cca2c6e590360df899aa9473f7a23a17122deb94 Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Mon, 5 Oct 2020 22:45:20 +0200 Subject: gnu: r-workflows: Update to 0.2.0. * gnu/packages/cran.scm (r-workflows): Update to 0.2.0. [propagated-inputs]: Add r-tidyselect. --- gnu/packages/cran.scm | 7 ++++--- 1 file changed, 4 insertions(+), 3 deletions(-) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 8edfc9bbab..cc5d61f58c 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -23696,14 +23696,14 @@ (define-public r-igraph (define-public r-workflows (package (name "r-workflows") - (version "0.1.3") + (version "0.2.0") (source (origin (method url-fetch) (uri (cran-uri "workflows" version)) (sha256 (base32 - "1d5njd1xdl8kghlbar4acgl9hxq83p6k7yks592cvakmcz7f853m")))) + "1mj0ibl6myzw5vl5n4gcfy7fz8wd1755kp8sdy18isxg8h5h23ya")))) (properties `((upstream-name . "workflows"))) (build-system r-build-system) (propagated-inputs @@ -23713,7 +23713,8 @@ (define-public r-workflows ("r-glue" ,r-glue) ("r-hardhat" ,r-hardhat) ("r-parsnip" ,r-parsnip) - ("r-rlang" ,r-rlang))) + ("r-rlang" ,r-rlang) + ("r-tidyselect" ,r-tidyselect))) (native-inputs `(("r-knitr" ,r-knitr))) (home-page "https://github.com/tidymodels/workflows") -- cgit v1.2.3 From ce35e06563b38caf5e9ebfaff0c687fcf00e1e9d Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Mon, 5 Oct 2020 22:45:26 +0200 Subject: gnu: r-rsample: Update to 0.0.8. * gnu/packages/cran.scm (r-rsample): Update to 0.0.8. [propagated-inputs]: Add r-ellipsis, r-modeldata, and r-slider. --- gnu/packages/cran.scm | 7 +++++-- 1 file changed, 5 insertions(+), 2 deletions(-) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index cc5d61f58c..a3cce7d22d 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -23845,22 +23845,25 @@ (define-public r-slider (define-public r-rsample (package (name "r-rsample") - (version "0.0.7") + (version "0.0.8") (source (origin (method url-fetch) (uri (cran-uri "rsample" version)) (sha256 (base32 - "0s6hgq0rcv3ianyidq3n9z34y5ww51gaggqkwmwns9yyxmwfjcm8")))) + "1psmxk16d4bz1v05x0gb9hn4brkdjxw8hjbxmj62snichnix3q3i")))) (properties `((upstream-name . "rsample"))) (build-system r-build-system) (propagated-inputs `(("r-dplyr" ,r-dplyr) + ("r-ellipsis" ,r-ellipsis) ("r-furrr" ,r-furrr) ("r-generics" ,r-generics) + ("r-modeldata" ,r-modeldata) ("r-purrr" ,r-purrr) ("r-rlang" ,r-rlang) + ("r-slider" ,r-slider) ("r-tibble" ,r-tibble) ("r-tidyr" ,r-tidyr) ("r-tidyselect" ,r-tidyselect) -- cgit v1.2.3 From 0918539051c1ff7345dab64f891fed5b8f410585 Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Mon, 5 Oct 2020 22:45:29 +0200 Subject: gnu: r-dials: Update to 0.0.9. * gnu/packages/cran.scm (r-dials): Update to 0.0.9. --- gnu/packages/cran.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index a3cce7d22d..c50f7a3182 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -23900,14 +23900,14 @@ (define-public r-dicedesign (define-public r-dials (package (name "r-dials") - (version "0.0.8") + (version "0.0.9") (source (origin (method url-fetch) (uri (cran-uri "dials" version)) (sha256 (base32 - "0jxmlcy20y57chflx91fqz6c4pbdckzr7jirq4s72vp723avrr4p")))) + "0g9wj2py4wz703rh4p7hk8qxqnkm7zyrypv4qz4vaqziazjsmxks")))) (properties `((upstream-name . "dials"))) (build-system r-build-system) (propagated-inputs -- cgit v1.2.3 From 2bf383bacaa7ca90f2adbbd5e8a6a6294e8478f8 Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Mon, 5 Oct 2020 22:45:34 +0200 Subject: gnu: r-tidypredict: Update to 0.4.7. * gnu/packages/cran.scm (r-tidypredict): Update to 0.4.7. [propagated-inputs]: Add r-stringr and r-tidyr. --- gnu/packages/cran.scm | 8 +++++--- 1 file changed, 5 insertions(+), 3 deletions(-) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index c50f7a3182..173094b64d 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -24012,14 +24012,14 @@ (define-public r-tidyposterior (define-public r-tidypredict (package (name "r-tidypredict") - (version "0.4.6") + (version "0.4.7") (source (origin (method url-fetch) (uri (cran-uri "tidypredict" version)) (sha256 (base32 - "1fx1nr8fry3nwy2391g26zkqakdf8f3j7zyrihbc0qhscvbdskiy")))) + "0z0wr0ssl1h0smr9431cy1ik5kxfy1nvkdcyyq9c0355h828hybh")))) (properties `((upstream-name . "tidypredict"))) (build-system r-build-system) (propagated-inputs @@ -24028,7 +24028,9 @@ (define-public r-tidypredict ("r-knitr" ,r-knitr) ("r-purrr" ,r-purrr) ("r-rlang" ,r-rlang) - ("r-tibble" ,r-tibble))) + ("r-stringr" ,r-stringr) + ("r-tibble" ,r-tibble) + ("r-tidyr" ,r-tidyr))) (native-inputs `(("r-knitr" ,r-knitr))) (home-page "https://tidypredict.tidymodels.org") -- cgit v1.2.3 From affd0272506705d39b155000472eb68e97e24383 Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Mon, 5 Oct 2020 22:45:37 +0200 Subject: gnu: r-tidytext: Update to 0.2.6. * gnu/packages/cran.scm (r-tidytext): Update to 0.2.6. --- gnu/packages/cran.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 173094b64d..93a6a03448 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -24136,14 +24136,14 @@ (define-public r-hunspell (define-public r-tidytext (package (name "r-tidytext") - (version "0.2.5") + (version "0.2.6") (source (origin (method url-fetch) (uri (cran-uri "tidytext" version)) (sha256 (base32 - "0kwbpffdnqrb6hgrrmrfnx890imbzvp5bs6sj1k72if28qijarm5")))) + "0xmjkab7p13ncfglf3a9hvndf8fh96mmxw3l7hcpbnaq9qkiwk29")))) (properties `((upstream-name . "tidytext"))) (build-system r-build-system) (propagated-inputs -- cgit v1.2.3 From 2429ba00479e37cc10e74bce11140ab13a932a61 Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Mon, 5 Oct 2020 22:45:40 +0200 Subject: gnu: r-seurat: Update to 3.2.2. * gnu/packages/cran.scm (r-seurat): Update to 3.2.2. --- gnu/packages/cran.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 93a6a03448..a135a8dcf3 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -24448,13 +24448,13 @@ (define-public r-maldiquant (define-public r-seurat (package (name "r-seurat") - (version "3.2.1") + (version "3.2.2") (source (origin (method url-fetch) (uri (cran-uri "Seurat" version)) (sha256 (base32 - "0jipc4xpmx56jzc31w6nsl77ah8x8wq7jclg2mxhjql4ixkwmz54")))) + "048vnj0c3mrwhr6yq3jqhgnkg68w99nj1ccsmgnd8rl694w26spj")))) (properties `((upstream-name . "Seurat"))) (build-system r-build-system) (propagated-inputs -- cgit v1.2.3 From 265b2bc5d37b57ced243522e370191c42363409f Mon Sep 17 00:00:00 2001 From: Arun Isaac Date: Sun, 23 Feb 2020 00:46:32 +0530 Subject: gnu: r-rgdal: Replace proj.4 with proj. * gnu/packages/cran.scm (r-rgdal)[inputs]: Replace proj.4 with proj. --- gnu/packages/cran.scm | 3 ++- 1 file changed, 2 insertions(+), 1 deletion(-) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index a135a8dcf3..e774782146 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -29,6 +29,7 @@ ;;; Copyright © 2020 Lars-Dominik Braun ;;; Copyright © 2020 Vinicius Monego ;;; Copyright © 2020 Antoine Côté +;;; Copyright © 2020 Arun Isaac ;;; ;;; This file is part of GNU Guix. ;;; @@ -16873,7 +16874,7 @@ (define-public r-rgdal (build-system r-build-system) (inputs `(("gdal" ,gdal) - ("proj.4" ,proj.4) + ("proj" ,proj) ("zlib" ,zlib))) (propagated-inputs `(("r-sp" ,r-sp))) -- cgit v1.2.3 From 328cf4e9a90cf98eb126eec35c17c020590be422 Mon Sep 17 00:00:00 2001 From: Arun Isaac Date: Mon, 12 Oct 2020 15:45:40 +0530 Subject: gnu: r-rgdal: Update to 1.5-17. * gnu/packages/cran.scm (r-rgdal): Update to 1.5-17. --- gnu/packages/cran.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index e774782146..59a409f8e9 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -16863,13 +16863,13 @@ (define-public r-parameters (define-public r-rgdal (package (name "r-rgdal") - (version "1.5-16") + (version "1.5-17") (source (origin (method url-fetch) (uri (cran-uri "rgdal" version)) (sha256 - (base32 "0rwlsafqxgqflfid4ciaa9qz3f75fgw8hilhaqj558gdxg8bzigp")))) + (base32 "16vk3a8azbqhv4m598i78hs9m1nlfcls6lx011v0wgiw6ksq64zw")))) (properties `((upstream-name . "rgdal"))) (build-system r-build-system) (inputs -- cgit v1.2.3 From 997abda92b75a1173130f45ea840c390db2b1a23 Mon Sep 17 00:00:00 2001 From: Marius Bakke Date: Mon, 12 Oct 2020 17:23:11 +0200 Subject: gnu: Remove redundant MariaDB inputs. For well-behaved build systems, including the "dev" output suffices. * gnu/packages/bioinformatics.scm (kentutils)[inputs]: Remove MARIADB:LIB. * gnu/packages/cran.scm (r-rmysql)[inputs]: Likewise. * gnu/packages/databases.scm (python-mysqlclient, soci)[inputs]: Likewise. * gnu/packages/qt.scm (qt-4, qtbase): Likewise. * gnu/packages/ruby.scm (ruby-mysql2)[inputs]: Likewise. --- gnu/packages/bioinformatics.scm | 1 - gnu/packages/cran.scm | 3 +-- gnu/packages/databases.scm | 6 ++---- gnu/packages/kodi.scm | 2 +- gnu/packages/qt.scm | 2 -- gnu/packages/ruby.scm | 3 +-- 6 files changed, 5 insertions(+), 12 deletions(-) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index b0edfa8403..0d5e6e3d20 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -11154,7 +11154,6 @@ (define-public kentutils ("tcsh" ,tcsh) ("perl" ,perl) ("libpng" ,libpng) - ("mariadb" ,mariadb "lib") ("mariadb-dev" ,mariadb "dev") ("openssl" ,openssl-1.0))) (home-page "https://genome.cse.ucsc.edu/index.html") diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 59a409f8e9..463e9d4279 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -3327,8 +3327,7 @@ (define-public r-rmysql (properties `((upstream-name . "RMySQL"))) (build-system r-build-system) (inputs - `(("mariadb" ,mariadb "lib") - ("mariadb-dev" ,mariadb "dev") + `(("mariadb-dev" ,mariadb "dev") ("zlib" ,zlib))) (propagated-inputs `(("r-dbi" ,r-dbi))) diff --git a/gnu/packages/databases.scm b/gnu/packages/databases.scm index 7bce37c3e9..2d4b5cf129 100644 --- a/gnu/packages/databases.scm +++ b/gnu/packages/databases.scm @@ -2990,8 +2990,7 @@ (define-public python-mysqlclient (build-system python-build-system) (arguments '(#:tests? #f)) ;XXX: requires a live database (inputs - `(("mysql" ,mariadb "lib") - ("mysql-dev" ,mariadb "dev"))) + `(("mysql-dev" ,mariadb "dev"))) (home-page "https://github.com/PyMySQL/mysqlclient-python") (synopsis "MySQLdb is an interface to the popular MySQL database server for Python") (description "MySQLdb is an interface to the popular MySQL database server @@ -3672,8 +3671,7 @@ (define-public soci ("sqlite" ,sqlite) ("odbc" ,unixodbc) ("boost" ,boost) - ("mariadb:dev" ,mariadb "dev") - ("mariadb:lib" ,mariadb "lib"))) + ("mariadb:dev" ,mariadb "dev"))) (arguments `(#:tests? #f ; Tests may require running database management systems. #:phases diff --git a/gnu/packages/kodi.scm b/gnu/packages/kodi.scm index 2edf5c0614..9ccdea46ef 100644 --- a/gnu/packages/kodi.scm +++ b/gnu/packages/kodi.scm @@ -435,7 +435,7 @@ (define-public kodi ("libxrender" ,libxrender) ("libxslt" ,libxslt) ("lzo" ,lzo) - ("mariadb" ,mariadb "lib") + ("mariadb-dev" ,mariadb "lib") ("mariadb-dev" ,mariadb "dev") ("openssl" ,openssl) ("pcre" ,pcre) diff --git a/gnu/packages/qt.scm b/gnu/packages/qt.scm index a596ca4ce6..aabbdc308f 100644 --- a/gnu/packages/qt.scm +++ b/gnu/packages/qt.scm @@ -195,7 +195,6 @@ (define-public qt-4 ("libxslt" ,libxslt) ("libxtst" ,libxtst) ("mtdev" ,mtdev) - ("mariadb" ,mariadb "lib") ("mariadb-dev" ,mariadb "dev") ("nss" ,nss) ("postgresql" ,postgresql) @@ -406,7 +405,6 @@ (define-public qtbase ("libxslt" ,libxslt) ("libxtst" ,libxtst) ("mtdev" ,mtdev) - ("mariadb" ,mariadb "lib") ("mariadb-dev" ,mariadb "dev") ("nss" ,nss) ("openssl" ,openssl) diff --git a/gnu/packages/ruby.scm b/gnu/packages/ruby.scm index 7348f29eb1..cd452f88d3 100644 --- a/gnu/packages/ruby.scm +++ b/gnu/packages/ruby.scm @@ -3795,8 +3795,7 @@ (define-public ruby-mysql2 (invoke "rspec")) #t))))) (inputs - `(("mariadb" ,mariadb "lib") - ("mariadb-dev" ,mariadb "dev") + `(("mariadb-dev" ,mariadb "dev") ("zlib" ,zlib))) (native-inputs `(("ruby-rspec" ,ruby-rspec) -- cgit v1.2.3 From ae6a61d7311cde7ccb863bcff57e26f7674ebc18 Mon Sep 17 00:00:00 2001 From: Wiktor Żelazny Date: Wed, 14 Oct 2020 19:24:05 +0200 Subject: gnu: r-sf: Use proj instead of proj.4. This addresses segfaults while loading vector GIS data from a file. * gnu/packages/cran.scm (r-sf)[inputs]: Replace proj.4 with proj, and add sqlite. Signed-off-by: Christopher Baines --- gnu/packages/cran.scm | 6 ++++-- 1 file changed, 4 insertions(+), 2 deletions(-) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 59a409f8e9..252699c691 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -17,7 +17,7 @@ ;;; Copyright © 2018 Marius Bakke ;;; Copyright © 2018, 2019 Brett Gilio ;;; Copyright © 2019 Nicolò Balzarotti -;;; Copyright © 2019 Wiktor Żelazny +;;; Copyright © 2019, 2020 Wiktor Żelazny ;;; Copyright © 2019 Arne Babenhauserheide ;;; Copyright © 2019, 2020 Efraim Flashner ;;; Copyright © 2020 Todor Kondić @@ -90,6 +90,7 @@ (define-module (gnu packages cran) #:use-module (gnu packages pulseaudio) ;libsndfile #:use-module (gnu packages python) #:use-module (gnu packages python-xyz) + #:use-module (gnu packages sqlite) #:use-module (gnu packages statistics) #:use-module (gnu packages tcl) #:use-module (gnu packages tls) @@ -13957,7 +13958,8 @@ (define-public r-sf (inputs `(("gdal" ,gdal) ("geos" ,geos) - ("proj" ,proj.4) + ("proj" ,proj) + ("sqlite" ,sqlite) ("zlib" ,zlib))) (propagated-inputs `(("r-classint" ,r-classint) -- cgit v1.2.3 From 633b0242d08279f493d4812ead7e4f6efcf9924d Mon Sep 17 00:00:00 2001 From: Magali Lemes Date: Fri, 16 Oct 2020 15:51:07 -0300 Subject: gnu: Add r-calculus. MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit * gnu/packages/cran.scm (r-calculus): New variable. Signed-off-by: Ludovic Courtès --- gnu/packages/cran.scm | 30 ++++++++++++++++++++++++++++++ 1 file changed, 30 insertions(+) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 252699c691..fea560f7a1 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -30,6 +30,7 @@ ;;; Copyright © 2020 Vinicius Monego ;;; Copyright © 2020 Antoine Côté ;;; Copyright © 2020 Arun Isaac +;;; Copyright © 2020 Magali Lemes ;;; ;;; This file is part of GNU Guix. ;;; @@ -24598,3 +24599,32 @@ (define-public r-absfiltergsea Without filtering, users can perform (original) two-tailed or one-tailed absolute GSEA.") (license license:gpl2))) + +(define-public r-calculus + (package + (name "r-calculus") + (version "0.2.1") + (source + (origin + (method url-fetch) + (uri (cran-uri "calculus" version)) + (sha256 + (base32 + "0hs7hzjl6xjza20v9zx9a1piywxa6w3h2rskr52d1dcbc0vwhinp")))) + (properties `((upstream-name . "calculus"))) + (build-system r-build-system) + (propagated-inputs + `(("r-rcpp" ,r-rcpp))) + (home-page "https://github.com/guidotti/calculus") + (synopsis "High dimensional numerical and symbolic calculus") + (description + "Efficient C++ optimized functions for numerical and symbolic calculus. +It includes basic symbolic arithmetic, tensor calculus, Einstein summing +convention, fast computation of the Levi-Civita symbol and generalized +Kronecker delta, Taylor series expansion, multivariate Hermite polynomials, +accurate high-order derivatives, differential operators (Gradient, Jacobian, +Hessian, Divergence, Curl, Laplacian) and numerical integration in arbitrary +orthogonal coordinate systems: cartesian, polar, spherical, cylindrical, +parabolic or user defined by custom scale factors.") + (license license:gpl3))) + -- cgit v1.2.3