From 8e79d820d0f150106f96a1109e1618bbede10d25 Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Fri, 19 Apr 2019 14:43:10 +0200 Subject: gnu: r-clipr: Update to 0.6.0. * gnu/packages/cran.scm (r-clipr): Update to 0.6.0. --- gnu/packages/cran.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 47cd1d7217..5da23ea414 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -78,14 +78,14 @@ (define-module (gnu packages cran) (define-public r-clipr (package (name "r-clipr") - (version "0.5.0") + (version "0.6.0") (source (origin (method url-fetch) (uri (cran-uri "clipr" version)) (sha256 (base32 - "1grx0lyww1cxmdvsr44wmbhz9i6zmiwxbchb97gxrfi9gy5kyc7x")))) + "0k9kimkmmj9k7290sxiqn4kd1vvm4w7q9a44wp0w30b7yjpavx2m")))) (build-system r-build-system) (home-page "https://github.com/mdlincoln/clipr") (synopsis "Read and write from the system clipboard") -- cgit v1.2.3 From 3d60c80713d36aa3280fe76d181b82801fed4c2c Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Fri, 19 Apr 2019 14:43:17 +0200 Subject: gnu: r-hardyweinberg: Update to 1.6.2. * gnu/packages/cran.scm (r-hardyweinberg): Update to 1.6.2. --- gnu/packages/cran.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 5da23ea414..ec60e283aa 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -3050,14 +3050,14 @@ (define-public r-rsolnp (define-public r-hardyweinberg (package (name "r-hardyweinberg") - (version "1.6.1") + (version "1.6.2") (source (origin (method url-fetch) (uri (cran-uri "HardyWeinberg" version)) (sha256 (base32 - "16n8qanxx0p5ny5zqxafn8hwb1xv94y1wig1iql8as5a5qh8lwcz")))) + "15i7b444hikkfgqmx2ki827998xwra38k9v7a7kavwz6zmq5mmv9")))) (properties `((upstream-name . "HardyWeinberg"))) (build-system r-build-system) (propagated-inputs -- cgit v1.2.3 From 5ac82ee33b20a3cdf95a910e8152d5e8e35e410d Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Fri, 19 Apr 2019 14:43:23 +0200 Subject: gnu: r-sdmtools: Update to 1.1-221.1. * gnu/packages/cran.scm (r-sdmtools): Update to 1.1-221.1. --- gnu/packages/cran.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index ec60e283aa..ec896f4a91 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -3317,14 +3317,14 @@ (define-public r-dtw (define-public r-sdmtools (package (name "r-sdmtools") - (version "1.1-221") + (version "1.1-221.1") (source (origin (method url-fetch) (uri (cran-uri "SDMTools" version)) (sha256 (base32 - "1kacrpamshv7wz83yn45sfbw4m9c44xrrngzcklnwx8gcxx2knm6")))) + "1fsgnlc7glawimzijp11j53g5bnfp1mdq9wb0754idmxcdi8a99q")))) (properties `((upstream-name . "SDMTools"))) (build-system r-build-system) (propagated-inputs `(("r-r-utils" ,r-r-utils))) -- cgit v1.2.3 From f0826fec468d4cf539403b44e27c22b2559c2374 Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Fri, 19 Apr 2019 14:43:29 +0200 Subject: gnu: r-rdpack: Update to 0.11-0. * gnu/packages/cran.scm (r-rdpack): Update to 0.11-0. --- gnu/packages/cran.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index ec896f4a91..bbc83d6b6e 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -5605,14 +5605,14 @@ (define-public r-rjags (define-public r-rdpack (package (name "r-rdpack") - (version "0.10-1") + (version "0.11-0") (source (origin (method url-fetch) (uri (cran-uri "Rdpack" version)) (sha256 (base32 - "0bbjnw88h54v40hzim00i8yd3p4rk9i84zfdmgcbnylscwvsf0av")))) + "11cd27s6zp5cxnwxcvz6rjf00y0r7aq8ywhzwpf1r4xy1z44kd4g")))) (properties `((upstream-name . "Rdpack"))) (build-system r-build-system) (propagated-inputs -- cgit v1.2.3 From 7015ae6881e2cb6cbcb2bcab817c2c751d118416 Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Fri, 19 Apr 2019 14:43:34 +0200 Subject: gnu: r-urltools: Update to 1.7.3. * gnu/packages/cran.scm (r-urltools): Update to 1.7.3. --- gnu/packages/cran.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index bbc83d6b6e..8816b2082b 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -13253,14 +13253,14 @@ (define-public r-polyclip (define-public r-urltools (package (name "r-urltools") - (version "1.7.2") + (version "1.7.3") (source (origin (method url-fetch) (uri (cran-uri "urltools" version)) (sha256 (base32 - "18lp66f2l504b8q3j4xy8j9pyzzlljw9f112sn6qii1cg83072wm")))) + "04x3my655dd287cbsszbnf75q0swmjlxxrblcsay7a8n3df3a830")))) (build-system r-build-system) (propagated-inputs `(("r-rcpp" ,r-rcpp) -- cgit v1.2.3 From 9b86fea05f223a3215e19cccc75d3504f707a1c2 Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Fri, 19 Apr 2019 15:38:25 +0200 Subject: gnu: Add r-sctransform. * gnu/packages/cran.scm (r-sctransform): New variable. --- gnu/packages/cran.scm | 32 ++++++++++++++++++++++++++++++++ 1 file changed, 32 insertions(+) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 8816b2082b..5ea36cfdd6 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -13888,3 +13888,35 @@ (define-public r-rex they are often difficult to interpret. Rex allows you to build complex regular expressions from human readable expressions") (license license:expat))) + +(define-public r-sctransform + (package + (name "r-sctransform") + (version "0.2.0") + (source + (origin + (method url-fetch) + (uri (cran-uri "sctransform" version)) + (sha256 + (base32 + "1r5kiqqs318q59h2i8m7c6nhghp9w6q26ss2y5a390lkhsawgx6p")))) + (build-system r-build-system) + (propagated-inputs + `(("r-future" ,r-future) + ("r-future-apply" ,r-future-apply) + ("r-ggplot2" ,r-ggplot2) + ("r-gridextra" ,r-gridextra) + ("r-mass" ,r-mass) + ("r-matrix" ,r-matrix) + ("r-rcpp" ,r-rcpp) + ("r-rcppeigen" ,r-rcppeigen) + ("r-reshape2" ,r-reshape2))) + (home-page "https://github.com/ChristophH/sctransform") + (synopsis "Variance stabilizing transformations for Single Cell UMI Data") + (description + "This package provides a normalization method for single-cell UMI count +data using a variance stabilizing transformation. The transformation is based +on a negative binomial regression model with regularized parameters. As part +of the same regression framework, this package also provides functions for +batch correction, and data correction.") + (license license:gpl3))) -- cgit v1.2.3 From 107850b3915c007fe1227bcb396cfe377e661e0f Mon Sep 17 00:00:00 2001 From: Nicolò Balzarotti Date: Fri, 1 Mar 2019 09:07:57 +0100 Subject: gnu: Add r-styler. * gnu/packages/cran.scm (r-styler): New variable. Signed-off-by: Ricardo Wurmus --- gnu/packages/cran.scm | 30 ++++++++++++++++++++++++++++++ 1 file changed, 30 insertions(+) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 5ea36cfdd6..2f9e4770ef 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -13920,3 +13920,33 @@ (define-public r-sctransform of the same regression framework, this package also provides functions for batch correction, and data correction.") (license license:gpl3))) + +(define-public r-styler + (package + (name "r-styler") + (version "1.1.0") + (source + (origin + (method url-fetch) + (uri (cran-uri "styler" version)) + (sha256 + (base32 + "1z24mi88snbz1avjw9phq0lzmigddvycc56s83nxzr9w9z85mh05")))) + (build-system r-build-system) + (propagated-inputs + `(("r-backports" ,r-backports) + ("r-cli" ,r-cli) + ("r-magrittr" ,r-magrittr) + ("r-purrr" ,r-purrr) + ("r-rematch2" ,r-rematch2) + ("r-rlang" ,r-rlang) + ("r-rprojroot" ,r-rprojroot) + ("r-tibble" ,r-tibble) + ("r-withr" ,r-withr) + ("r-xfun" ,r-xfun))) + (home-page "https://github.com/r-lib/styler") + (synopsis "Non-invasive pretty printing of R code") + (description + "This is a package for pretty-printing R code without changing the user's +formatting intent.") + (license license:gpl3))) -- cgit v1.2.3 From 17ae31b7a80e0794a5b621bc04f8dec5b88fef96 Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Sun, 21 Apr 2019 10:16:17 +0200 Subject: gnu: r-hdf5r: Update to 1.2.0. * gnu/packages/cran.scm (r-hdf5r): Update to 1.2.0. --- gnu/packages/cran.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 2f9e4770ef..742bc5f663 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -5489,14 +5489,14 @@ (define-public r-nbclust (define-public r-hdf5r (package (name "r-hdf5r") - (version "1.1.1") + (version "1.2.0") (source (origin (method url-fetch) (uri (cran-uri "hdf5r" version)) (sha256 (base32 - "1cq4rdfd0rqvy29ml3x1iid142ljnscs8f4d2y1na13hlvkl3k05")))) + "10gynjwaaxks8y9c2fl8k040j0nbwn372nil70009yfk9wrkx0aq")))) (build-system r-build-system) (inputs `(("hdf5" ,hdf5) -- cgit v1.2.3