From e2cd1d0fb918b55a1ab16271fac758b260057030 Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus <ricardo.wurmus@mdc-berlin.de>
Date: Fri, 18 Dec 2015 12:08:41 +0100
Subject: gnu: Add GenomicRanges.
* gnu/packages/bioinformatics.scm (r-genomicranges): New variable.
---
gnu/packages/bioinformatics.scm | 28 ++++++++++++++++++++++++++++
1 file changed, 28 insertions(+)
(limited to 'gnu/packages/bioinformatics.scm')
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 7a05d639fb..f6bc544a63 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -3309,6 +3309,34 @@ (define-public r-xvector
\"externally\" (behind an R external pointer, or on disk).")
(license license:artistic2.0)))
+(define-public r-genomicranges
+ (package
+ (name "r-genomicranges")
+ (version "1.22.2")
+ (source (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "GenomicRanges" version))
+ (sha256
+ (base32
+ "1jffvcs0jsi7q4l3pvjj6r73vll80csgkljvhqp0g2ixc43jjng9"))))
+ (properties
+ `((upstream-name . "GenomicRanges")
+ (r-repository . bioconductor)))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-biocgenerics" ,r-biocgenerics)
+ ("r-genomeinfodb" ,r-genomeinfodb)
+ ("r-xvector" ,r-xvector)))
+ (home-page "http://bioconductor.org/packages/GenomicRanges")
+ (synopsis "Representation and manipulation of genomic intervals")
+ (description
+ "This package provides tools to efficiently represent and manipulate
+genomic annotations and alignments is playing a central role when it comes to
+analyzing high-throughput sequencing data (a.k.a. NGS data). The
+GenomicRanges package defines general purpose containers for storing and
+manipulating genomic intervals and variables defined along a genome.")
+ (license license:artistic2.0)))
+
(define-public r-qtl
(package
(name "r-qtl")
--
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