From bb15b581f74dbf4f06425e3ef0aae1863adca377 Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Fri, 15 Jun 2018 07:24:23 +0200 Subject: gnu: Add r-bayseq. * gnu/packages/bioconductor.scm (r-bayseq): New variable. --- gnu/packages/bioconductor.scm | 26 ++++++++++++++++++++++++++ 1 file changed, 26 insertions(+) (limited to 'gnu/packages/bioconductor.scm') diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index ed35b4c61a..3dba9cbab4 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -371,3 +371,29 @@ filtered to remove spurious regions in the genome. Downstream steps of segmentation and calling are also implemented via packages DNAcopy and CGHcall, respectively.") (license license:gpl2+))) + +(define-public r-bayseq + (package + (name "r-bayseq") + (version "2.14.0") + (source + (origin + (method url-fetch) + (uri (bioconductor-uri "baySeq" version)) + (sha256 + (base32 + "0hbmm01a8libara9mbxknpk0wzarwfngnfwlmhpww91a0cmy5klg")))) + (properties `((upstream-name . "baySeq"))) + (build-system r-build-system) + (propagated-inputs + `(("r-abind" ,r-abind) + ("r-edger" ,r-edger) + ("r-genomicranges" ,r-genomicranges))) + (home-page "https://bioconductor.org/packages/baySeq/") + (synopsis "Bayesian analysis of differential expression patterns in count data") + (description + "This package identifies differential expression in high-throughput count +data, such as that derived from next-generation sequencing machines, +calculating estimated posterior likelihoods of differential expression (or +more complex hypotheses) via empirical Bayesian methods.") + (license license:gpl3))) -- cgit v1.2.3