From 838db0de5e185b49c6d61d5785aaf71e5310c330 Mon Sep 17 00:00:00 2001 From: zimoun Date: Wed, 23 Dec 2020 19:06:26 +0100 Subject: gnu: r-sushi: Move to (gnu packages bioconductor). * gnu/packages/bioinformatics.scm (r-sushi): Move from here... * gnu/packages/bioconductor.scm (r-sushi): ...to here. --- gnu/packages/bioconductor.scm | 22 ++++++++++++++++++++++ gnu/packages/bioinformatics.scm | 22 ---------------------- 2 files changed, 22 insertions(+), 22 deletions(-) diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index 33f66ce8be..3dd34e7f24 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -9300,3 +9300,25 @@ graph with the mapped data. In addition, @code{r-pathview} also seamlessly integrates with pathway and gene set (enrichment) analysis tools for large-scale and fully automated analysis.") (license license:gpl3+))) + +(define-public r-sushi + (package + (name "r-sushi") + (version "1.28.0") + (source (origin + (method url-fetch) + (uri (bioconductor-uri "Sushi" version)) + (sha256 + (base32 + "0ksj4f9z14mjsv6ssg5dwhpldw4r7wpdsln2if5g486mm1c56r8p")))) + (properties `((upstream-name . "Sushi"))) + (build-system r-build-system) + (propagated-inputs + `(("r-biomart" ,r-biomart) + ("r-zoo" ,r-zoo))) + (home-page "https://bioconductor.org/packages/Sushi") + (synopsis "Tools for visualizing genomics data") + (description + "This package provides flexible, quantitative, and integrative genomic +visualizations for publication-quality multi-panel figures.") + (license license:gpl2+))) diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 96fa22f1a3..6ef93d9b62 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -10867,28 +10867,6 @@ with your data.") EMBL-EBI GWAS catalog.") (license license:artistic2.0))) -(define-public r-sushi - (package - (name "r-sushi") - (version "1.28.0") - (source (origin - (method url-fetch) - (uri (bioconductor-uri "Sushi" version)) - (sha256 - (base32 - "0ksj4f9z14mjsv6ssg5dwhpldw4r7wpdsln2if5g486mm1c56r8p")))) - (properties `((upstream-name . "Sushi"))) - (build-system r-build-system) - (propagated-inputs - `(("r-biomart" ,r-biomart) - ("r-zoo" ,r-zoo))) - (home-page "https://bioconductor.org/packages/Sushi") - (synopsis "Tools for visualizing genomics data") - (description - "This package provides flexible, quantitative, and integrative genomic -visualizations for publication-quality multi-panel figures.") - (license license:gpl2+))) - (define-public r-dropbead (let ((commit "d746c6f3b32110428ea56d6a0001ce52a251c247") (revision "2")) -- cgit v1.2.3 From 69a5e066c17452f3ef7843451510ae818184324b Mon Sep 17 00:00:00 2001 From: zimoun Date: Wed, 23 Dec 2020 19:06:27 +0100 Subject: gnu: r-gwascat: Move to (gnu packages bioconductor). * gnu/packages/bioinformatics.scm (r-gwascat): Move from here... * gnu/packages/bioconductor.scm (r-gwascat): ...to here. --- gnu/packages/bioconductor.scm | 33 +++++++++++++++++++++++++++++++++ gnu/packages/bioinformatics.scm | 33 --------------------------------- 2 files changed, 33 insertions(+), 33 deletions(-) diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index 3dd34e7f24..970602a32b 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -9241,6 +9241,39 @@ preprocessing of cytometry data, including i) normalization using bead standards, ii) single-cell deconvolution, and iii) bead-based compensation.") (license license:gpl2+))) +(define-public r-gwascat + (package + (name "r-gwascat") + (version "2.22.0") + (source + (origin + (method url-fetch) + (uri (bioconductor-uri "gwascat" version)) + (sha256 + (base32 + "1aqi1ny93virnzsxkh9ccx3mws70bgv0r8nwgla09vffb7f16nna")))) + (build-system r-build-system) + (propagated-inputs + `(("r-annotationdbi" ,r-annotationdbi) + ("r-biocfilecache" ,r-biocfilecache) + ("r-biostrings" ,r-biostrings) + ("r-genomeinfodb" ,r-genomeinfodb) + ("r-genomicfeatures" ,r-genomicfeatures) + ("r-genomicranges" ,r-genomicranges) + ("r-iranges" ,r-iranges) + ("r-readr" ,r-readr) + ("r-s4vectors" ,r-s4vectors) + ("r-snpstats" ,r-snpstats) + ("r-variantannotation" ,r-variantannotation))) + (native-inputs + `(("r-knitr" ,r-knitr))) + (home-page "https://bioconductor.org/packages/gwascat") + (synopsis "Tools for data in the EMBL-EBI GWAS catalog") + (description + "This package provides tools for representing and modeling data in the +EMBL-EBI GWAS catalog.") + (license license:artistic2.0))) + (define-public r-kegggraph (package (name "r-kegggraph") diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 6ef93d9b62..ab187dcddd 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -10834,39 +10834,6 @@ grid graphics package. This results in genomic information plotted together with your data.") (license license:artistic2.0))) -(define-public r-gwascat - (package - (name "r-gwascat") - (version "2.22.0") - (source - (origin - (method url-fetch) - (uri (bioconductor-uri "gwascat" version)) - (sha256 - (base32 - "1aqi1ny93virnzsxkh9ccx3mws70bgv0r8nwgla09vffb7f16nna")))) - (build-system r-build-system) - (propagated-inputs - `(("r-annotationdbi" ,r-annotationdbi) - ("r-biocfilecache" ,r-biocfilecache) - ("r-biostrings" ,r-biostrings) - ("r-genomeinfodb" ,r-genomeinfodb) - ("r-genomicfeatures" ,r-genomicfeatures) - ("r-genomicranges" ,r-genomicranges) - ("r-iranges" ,r-iranges) - ("r-readr" ,r-readr) - ("r-s4vectors" ,r-s4vectors) - ("r-snpstats" ,r-snpstats) - ("r-variantannotation" ,r-variantannotation))) - (native-inputs - `(("r-knitr" ,r-knitr))) - (home-page "https://bioconductor.org/packages/gwascat") - (synopsis "Tools for data in the EMBL-EBI GWAS catalog") - (description - "This package provides tools for representing and modeling data in the -EMBL-EBI GWAS catalog.") - (license license:artistic2.0))) - (define-public r-dropbead (let ((commit "d746c6f3b32110428ea56d6a0001ce52a251c247") (revision "2")) -- cgit v1.2.3 From 2a4322f7c34b3cf81ae3ff39527404c22e68399a Mon Sep 17 00:00:00 2001 From: zimoun Date: Wed, 23 Dec 2020 19:06:28 +0100 Subject: gnu: r-gviz: Move to (gnu packages bioconductor). * gnu/packages/bioinformatics.scm (r-gviz): Move from here... * gnu/packages/bioconductor.scm (r-gviz): ...to here. --- gnu/packages/bioconductor.scm | 49 +++++++++++++++++++++++++++++++++++++++++ gnu/packages/bioinformatics.scm | 49 ----------------------------------------- 2 files changed, 49 insertions(+), 49 deletions(-) diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index 970602a32b..11e9a46b11 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -9241,6 +9241,55 @@ preprocessing of cytometry data, including i) normalization using bead standards, ii) single-cell deconvolution, and iii) bead-based compensation.") (license license:gpl2+))) +(define-public r-gviz + (package + (name "r-gviz") + (version "1.34.0") + (source + (origin + (method url-fetch) + (uri (bioconductor-uri "Gviz" version)) + (sha256 + (base32 + "0v7bz46b91dnrr55ah42ljj1i2xs3090s4w0lw8098pag00p4vh2")))) + (properties `((upstream-name . "Gviz"))) + (build-system r-build-system) + (propagated-inputs + `(("r-annotationdbi" ,r-annotationdbi) + ("r-biobase" ,r-biobase) + ("r-biocgenerics" ,r-biocgenerics) + ("r-biomart" ,r-biomart) + ("r-biostrings" ,r-biostrings) + ("r-biovizbase" ,r-biovizbase) + ("r-bsgenome" ,r-bsgenome) + ("r-digest" ,r-digest) + ("r-ensembldb" ,r-ensembldb) + ("r-genomeinfodb" ,r-genomeinfodb) + ("r-genomicalignments" ,r-genomicalignments) + ("r-genomicfeatures" ,r-genomicfeatures) + ("r-genomicranges" ,r-genomicranges) + ("r-iranges" ,r-iranges) + ("r-lattice" ,r-lattice) + ("r-latticeextra" ,r-latticeextra) + ("r-matrixstats" ,r-matrixstats) + ("r-rcolorbrewer" ,r-rcolorbrewer) + ("r-rsamtools" ,r-rsamtools) + ("r-rtracklayer" ,r-rtracklayer) + ("r-s4vectors" ,r-s4vectors) + ("r-xvector" ,r-xvector))) + (native-inputs + `(("r-knitr" ,r-knitr))) + (home-page "https://bioconductor.org/packages/Gviz") + (synopsis "Plotting data and annotation information along genomic coordinates") + (description + "Genomic data analyses requires integrated visualization of known genomic +information and new experimental data. Gviz uses the biomaRt and the +rtracklayer packages to perform live annotation queries to Ensembl and UCSC +and translates this to e.g. gene/transcript structures in viewports of the +grid graphics package. This results in genomic information plotted together +with your data.") + (license license:artistic2.0))) + (define-public r-gwascat (package (name "r-gwascat") diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index ab187dcddd..caa505fdab 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -10785,55 +10785,6 @@ interpretation of members of a collection of association statistics on a family of feature/genome hypotheses.") (license license:artistic2.0))) -(define-public r-gviz - (package - (name "r-gviz") - (version "1.34.0") - (source - (origin - (method url-fetch) - (uri (bioconductor-uri "Gviz" version)) - (sha256 - (base32 - "0v7bz46b91dnrr55ah42ljj1i2xs3090s4w0lw8098pag00p4vh2")))) - (properties `((upstream-name . "Gviz"))) - (build-system r-build-system) - (propagated-inputs - `(("r-annotationdbi" ,r-annotationdbi) - ("r-biobase" ,r-biobase) - ("r-biocgenerics" ,r-biocgenerics) - ("r-biomart" ,r-biomart) - ("r-biostrings" ,r-biostrings) - ("r-biovizbase" ,r-biovizbase) - ("r-bsgenome" ,r-bsgenome) - ("r-digest" ,r-digest) - ("r-ensembldb" ,r-ensembldb) - ("r-genomeinfodb" ,r-genomeinfodb) - ("r-genomicalignments" ,r-genomicalignments) - ("r-genomicfeatures" ,r-genomicfeatures) - ("r-genomicranges" ,r-genomicranges) - ("r-iranges" ,r-iranges) - ("r-lattice" ,r-lattice) - ("r-latticeextra" ,r-latticeextra) - ("r-matrixstats" ,r-matrixstats) - ("r-rcolorbrewer" ,r-rcolorbrewer) - ("r-rsamtools" ,r-rsamtools) - ("r-rtracklayer" ,r-rtracklayer) - ("r-s4vectors" ,r-s4vectors) - ("r-xvector" ,r-xvector))) - (native-inputs - `(("r-knitr" ,r-knitr))) - (home-page "https://bioconductor.org/packages/Gviz") - (synopsis "Plotting data and annotation information along genomic coordinates") - (description - "Genomic data analyses requires integrated visualization of known genomic -information and new experimental data. Gviz uses the biomaRt and the -rtracklayer packages to perform live annotation queries to Ensembl and UCSC -and translates this to e.g. gene/transcript structures in viewports of the -grid graphics package. This results in genomic information plotted together -with your data.") - (license license:artistic2.0))) - (define-public r-dropbead (let ((commit "d746c6f3b32110428ea56d6a0001ce52a251c247") (revision "2")) -- cgit v1.2.3 From 9534e7b7061f672d4b8a0d4cafd3b1be7908a613 Mon Sep 17 00:00:00 2001 From: zimoun Date: Wed, 23 Dec 2020 19:06:29 +0100 Subject: gnu: r-gqtlstats: Move to (gnu packages bioconductor). * gnu/packages/bioinformatics.scm (r-gqtlstats): Move from here... * gnu/packages/bioconductor.scm (r-gqtlstats): ...to here. --- gnu/packages/bioconductor.scm | 56 +++++++++++++++++++++++++++++++++++++++++ gnu/packages/bioinformatics.scm | 56 ----------------------------------------- 2 files changed, 56 insertions(+), 56 deletions(-) diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index 11e9a46b11..1bf9a49272 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -9241,6 +9241,62 @@ preprocessing of cytometry data, including i) normalization using bead standards, ii) single-cell deconvolution, and iii) bead-based compensation.") (license license:gpl2+))) +(define-public r-gqtlstats + (package + (name "r-gqtlstats") + (version "1.21.3") + (source + (origin + (method url-fetch) + (uri (bioconductor-uri "gQTLstats" version)) + (sha256 + (base32 + "1h78l23idf867djmdk97b02jxgmz4vfr2dai01fp648d0lsx5mkl")))) + (properties `((upstream-name . "gQTLstats"))) + (build-system r-build-system) + (propagated-inputs + `(("r-annotationdbi" ,r-annotationdbi) + ("r-batchjobs" ,r-batchjobs) + ("r-bbmisc" ,r-bbmisc) + ("r-beeswarm" ,r-beeswarm) + ("r-biobase" ,r-biobase) + ("r-biocgenerics" ,r-biocgenerics) + ("r-doparallel" ,r-doparallel) + ("r-dplyr" ,r-dplyr) + ("r-erma" ,r-erma) + ("r-ffbase" ,r-ffbase) + ("r-foreach" ,r-foreach) + ("r-genomeinfodb" ,r-genomeinfodb) + ("r-genomicfeatures" ,r-genomicfeatures) + ("r-genomicfiles" ,r-genomicfiles) + ("r-genomicranges" ,r-genomicranges) + ("r-ggbeeswarm" ,r-ggbeeswarm) + ("r-ggplot2" ,r-ggplot2) + ("r-gqtlbase" ,r-gqtlbase) + ("r-hardyweinberg" ,r-hardyweinberg) + ("r-homo-sapiens" ,r-homo-sapiens) + ("r-iranges" ,r-iranges) + ("r-limma" ,r-limma) + ("r-mgcv" ,r-mgcv) + ("r-plotly" ,r-plotly) + ("r-reshape2" ,r-reshape2) + ("r-s4vectors" ,r-s4vectors) + ("r-shiny" ,r-shiny) + ("r-snpstats" ,r-snpstats) + ("r-summarizedexperiment" ,r-summarizedexperiment) + ("r-variantannotation" ,r-variantannotation))) + (native-inputs + `(("r-knitr" ,r-knitr))) + (home-page "https://bioconductor.org/packages/gQTLstats") + (synopsis "Computationally efficient analysis for eQTL and allied studies") + (description + "This package provides tools for the computationally efficient analysis +of @dfn{quantitative trait loci} (QTL) data, including eQTL, mQTL, dsQTL, etc. +The software in this package aims to support refinements and functional +interpretation of members of a collection of association statistics on a +family of feature/genome hypotheses.") + (license license:artistic2.0))) + (define-public r-gviz (package (name "r-gviz") diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index caa505fdab..67b4c4cb73 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -10729,62 +10729,6 @@ handling of existing population-level data for the purpose of flexibly defining LD blocks.") (license license:artistic2.0))) -(define-public r-gqtlstats - (package - (name "r-gqtlstats") - (version "1.21.3") - (source - (origin - (method url-fetch) - (uri (bioconductor-uri "gQTLstats" version)) - (sha256 - (base32 - "1h78l23idf867djmdk97b02jxgmz4vfr2dai01fp648d0lsx5mkl")))) - (properties `((upstream-name . "gQTLstats"))) - (build-system r-build-system) - (propagated-inputs - `(("r-annotationdbi" ,r-annotationdbi) - ("r-batchjobs" ,r-batchjobs) - ("r-bbmisc" ,r-bbmisc) - ("r-beeswarm" ,r-beeswarm) - ("r-biobase" ,r-biobase) - ("r-biocgenerics" ,r-biocgenerics) - ("r-doparallel" ,r-doparallel) - ("r-dplyr" ,r-dplyr) - ("r-erma" ,r-erma) - ("r-ffbase" ,r-ffbase) - ("r-foreach" ,r-foreach) - ("r-genomeinfodb" ,r-genomeinfodb) - ("r-genomicfeatures" ,r-genomicfeatures) - ("r-genomicfiles" ,r-genomicfiles) - ("r-genomicranges" ,r-genomicranges) - ("r-ggbeeswarm" ,r-ggbeeswarm) - ("r-ggplot2" ,r-ggplot2) - ("r-gqtlbase" ,r-gqtlbase) - ("r-hardyweinberg" ,r-hardyweinberg) - ("r-homo-sapiens" ,r-homo-sapiens) - ("r-iranges" ,r-iranges) - ("r-limma" ,r-limma) - ("r-mgcv" ,r-mgcv) - ("r-plotly" ,r-plotly) - ("r-reshape2" ,r-reshape2) - ("r-s4vectors" ,r-s4vectors) - ("r-shiny" ,r-shiny) - ("r-snpstats" ,r-snpstats) - ("r-summarizedexperiment" ,r-summarizedexperiment) - ("r-variantannotation" ,r-variantannotation))) - (native-inputs - `(("r-knitr" ,r-knitr))) - (home-page "https://bioconductor.org/packages/gQTLstats") - (synopsis "Computationally efficient analysis for eQTL and allied studies") - (description - "This package provides tools for the computationally efficient analysis -of @dfn{quantitative trait loci} (QTL) data, including eQTL, mQTL, dsQTL, etc. -The software in this package aims to support refinements and functional -interpretation of members of a collection of association statistics on a -family of feature/genome hypotheses.") - (license license:artistic2.0))) - (define-public r-dropbead (let ((commit "d746c6f3b32110428ea56d6a0001ce52a251c247") (revision "2")) -- cgit v1.2.3 From 8f1237c3508e36dac62edce5596f0f2f856c9690 Mon Sep 17 00:00:00 2001 From: zimoun Date: Wed, 23 Dec 2020 19:06:30 +0100 Subject: gnu: r-ldblock: Move to (gnu packages bioconductor). * gnu/packages/bioinformatics.scm (r-ldblock): Move from here... * gnu/packages/bioconductor.scm (r-ldblock): ...to here. --- gnu/packages/bioconductor.scm | 34 ++++++++++++++++++++++++++++++++++ gnu/packages/bioinformatics.scm | 34 ---------------------------------- 2 files changed, 34 insertions(+), 34 deletions(-) diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index 1bf9a49272..40a02dbe7f 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -9405,6 +9405,40 @@ maintaining all essential pathway attributes. The package offers functionalities including parsing, graph operation, visualization and etc.") (license license:gpl2+))) +(define-public r-ldblock + (package + (name "r-ldblock") + (version "1.20.0") + (source + (origin + (method url-fetch) + (uri (bioconductor-uri "ldblock" version)) + (sha256 + (base32 + "09i3ikv0axks9g842z1pjsc8x0fba51zyyc218h0bylbi1n9cdkm")))) + (build-system r-build-system) + (propagated-inputs + `(("r-biocgenerics" ,r-biocgenerics) + ("r-ensdb-hsapiens-v75" ,r-ensdb-hsapiens-v75) + ("r-ensembldb" ,r-ensembldb) + ("r-genomeinfodb" ,r-genomeinfodb) + ("r-genomicfiles" ,r-genomicfiles) + ("r-httr" ,r-httr) + ("r-matrix" ,r-matrix) + ("r-rsamtools" ,r-rsamtools) + ("r-snpstats" ,r-snpstats) + ("r-variantannotation" ,r-variantannotation))) + (native-inputs + `(("r-knitr" ,r-knitr))) + (home-page "https://bioconductor.org/packages/ldblock") + (synopsis "Data structures for linkage disequilibrium measures in populations") + (description + "This package defines data structures for @dfn{linkage +disequilibrium} (LD) measures in populations. Its purpose is to simplify +handling of existing population-level data for the purpose of flexibly +defining LD blocks.") + (license license:artistic2.0))) + (define-public r-pathview (package (name "r-pathview") diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 67b4c4cb73..25021f1ee8 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -10695,40 +10695,6 @@ metadata and outputs of the ChromImpute procedure applied to ENCODE cell lines by Ernst and Kellis.") (license license:artistic2.0))) -(define-public r-ldblock - (package - (name "r-ldblock") - (version "1.20.0") - (source - (origin - (method url-fetch) - (uri (bioconductor-uri "ldblock" version)) - (sha256 - (base32 - "09i3ikv0axks9g842z1pjsc8x0fba51zyyc218h0bylbi1n9cdkm")))) - (build-system r-build-system) - (propagated-inputs - `(("r-biocgenerics" ,r-biocgenerics) - ("r-ensdb-hsapiens-v75" ,r-ensdb-hsapiens-v75) - ("r-ensembldb" ,r-ensembldb) - ("r-genomeinfodb" ,r-genomeinfodb) - ("r-genomicfiles" ,r-genomicfiles) - ("r-httr" ,r-httr) - ("r-matrix" ,r-matrix) - ("r-rsamtools" ,r-rsamtools) - ("r-snpstats" ,r-snpstats) - ("r-variantannotation" ,r-variantannotation))) - (native-inputs - `(("r-knitr" ,r-knitr))) - (home-page "https://bioconductor.org/packages/ldblock") - (synopsis "Data structures for linkage disequilibrium measures in populations") - (description - "This package defines data structures for @dfn{linkage -disequilibrium} (LD) measures in populations. Its purpose is to simplify -handling of existing population-level data for the purpose of flexibly -defining LD blocks.") - (license license:artistic2.0))) - (define-public r-dropbead (let ((commit "d746c6f3b32110428ea56d6a0001ce52a251c247") (revision "2")) -- cgit v1.2.3 From 8c2b7c9a2ab9d11d5619e8314f26266cae672bd1 Mon Sep 17 00:00:00 2001 From: zimoun Date: Wed, 23 Dec 2020 19:06:31 +0100 Subject: gnu: r-erma: Move to (gnu packages bioconductor). * gnu/packages/bioinformatics.scm (r-erma): Move from here... * gnu/packages/bioconductor.scm (r-erma): ...to here. --- gnu/packages/bioconductor.scm | 40 ++++++++++++++++++++++++++++++++++++++++ gnu/packages/bioinformatics.scm | 40 ---------------------------------------- 2 files changed, 40 insertions(+), 40 deletions(-) diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index 40a02dbe7f..466bb71101 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -9241,6 +9241,46 @@ preprocessing of cytometry data, including i) normalization using bead standards, ii) single-cell deconvolution, and iii) bead-based compensation.") (license license:gpl2+))) +(define-public r-erma + (package + (name "r-erma") + (version "1.6.0") + (source + (origin + (method url-fetch) + (uri (bioconductor-uri "erma" version)) + (sha256 + (base32 + "1k2j1xhv0vwn45xmh8ds0gz812px5hnpgzvp37ngsdn4j5ai1l0k")))) + (build-system r-build-system) + (propagated-inputs + `(("r-annotationdbi" ,r-annotationdbi) + ("r-biobase" ,r-biobase) + ("r-biocgenerics" ,r-biocgenerics) + ("r-biocparallel" ,r-biocparallel) + ("r-genomeinfodb" ,r-genomeinfodb) + ("r-genomicfiles" ,r-genomicfiles) + ("r-genomicranges" ,r-genomicranges) + ("r-ggplot2" ,r-ggplot2) + ("r-homo-sapiens" ,r-homo-sapiens) + ("r-iranges" ,r-iranges) + ("r-rtracklayer" ,r-rtracklayer) + ("r-s4vectors" ,r-s4vectors) + ("r-shiny" ,r-shiny) + ("r-summarizedexperiment" ,r-summarizedexperiment))) + (native-inputs + `(("r-knitr" ,r-knitr))) + (home-page "https://bioconductor.org/packages/erma") + (synopsis "Epigenomic road map adventures") + (description + "The epigenomics road map describes locations of epigenetic marks in DNA +from a variety of cell types. Of interest are locations of histone +modifications, sites of DNA methylation, and regions of accessible chromatin. +This package presents a selection of elements of the road map including +metadata and outputs of the ChromImpute procedure applied to ENCODE cell lines +by Ernst and Kellis.") + (license license:artistic2.0))) + (define-public r-gqtlstats (package (name "r-gqtlstats") diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 25021f1ee8..1c59d7a690 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -10655,46 +10655,6 @@ the earlier snpMatrix package, allowing for uncertainty in genotypes.") several related annotation packages.") (license license:artistic2.0))) -(define-public r-erma - (package - (name "r-erma") - (version "1.6.0") - (source - (origin - (method url-fetch) - (uri (bioconductor-uri "erma" version)) - (sha256 - (base32 - "1k2j1xhv0vwn45xmh8ds0gz812px5hnpgzvp37ngsdn4j5ai1l0k")))) - (build-system r-build-system) - (propagated-inputs - `(("r-annotationdbi" ,r-annotationdbi) - ("r-biobase" ,r-biobase) - ("r-biocgenerics" ,r-biocgenerics) - ("r-biocparallel" ,r-biocparallel) - ("r-genomeinfodb" ,r-genomeinfodb) - ("r-genomicfiles" ,r-genomicfiles) - ("r-genomicranges" ,r-genomicranges) - ("r-ggplot2" ,r-ggplot2) - ("r-homo-sapiens" ,r-homo-sapiens) - ("r-iranges" ,r-iranges) - ("r-rtracklayer" ,r-rtracklayer) - ("r-s4vectors" ,r-s4vectors) - ("r-shiny" ,r-shiny) - ("r-summarizedexperiment" ,r-summarizedexperiment))) - (native-inputs - `(("r-knitr" ,r-knitr))) - (home-page "https://bioconductor.org/packages/erma") - (synopsis "Epigenomic road map adventures") - (description - "The epigenomics road map describes locations of epigenetic marks in DNA -from a variety of cell types. Of interest are locations of histone -modifications, sites of DNA methylation, and regions of accessible chromatin. -This package presents a selection of elements of the road map including -metadata and outputs of the ChromImpute procedure applied to ENCODE cell lines -by Ernst and Kellis.") - (license license:artistic2.0))) - (define-public r-dropbead (let ((commit "d746c6f3b32110428ea56d6a0001ce52a251c247") (revision "2")) -- cgit v1.2.3 From a2c66d18a565d85e94ea305429878d05e88b982a Mon Sep 17 00:00:00 2001 From: zimoun Date: Wed, 23 Dec 2020 19:06:32 +0100 Subject: gnu: r-homo-sapiens: Move to (gnu packages bioconductor). * gnu/packages/bioinformatics.scm (r-homo-sapiens): Move from here... * gnu/packages/bioconductor.scm (r-homo-sapiens): ...to here. Replace 'string-append' by 'bioconductor-uri' with 'annotation'. --- gnu/packages/bioconductor.scm | 27 +++++++++++++++++++++++++++ gnu/packages/bioinformatics.scm | 32 -------------------------------- 2 files changed, 27 insertions(+), 32 deletions(-) diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index 466bb71101..3b8dce30e5 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -389,6 +389,33 @@ musculus (Mouse) as provided by UCSC (mm10, December 2011) and stored in Biostrings objects.") (license license:artistic2.0))) +(define-public r-homo-sapiens + (package + (name "r-homo-sapiens") + (version "1.3.1") + (source (origin + (method url-fetch) + (uri (bioconductor-uri "Homo.sapiens" version 'annotation)) + (sha256 + (base32 + "151vj7h5p1c8yd5swrchk46z469p135wk50hvkl0nhgndvy0jj01")))) + (properties + `((upstream-name . "Homo.sapiens"))) + (build-system r-build-system) + (propagated-inputs + `(("r-genomicfeatures" ,r-genomicfeatures) + ("r-go-db" ,r-go-db) + ("r-org-hs-eg-db" ,r-org-hs-eg-db) + ("r-txdb-hsapiens-ucsc-hg19-knowngene" ,r-txdb-hsapiens-ucsc-hg19-knowngene) + ("r-organismdbi" ,r-organismdbi) + ("r-annotationdbi" ,r-annotationdbi))) + (home-page "https://bioconductor.org/packages/Homo.sapiens/") + (synopsis "Annotation package for the Homo.sapiens object") + (description + "This package contains the Homo.sapiens object to access data from +several related annotation packages.") + (license license:artistic2.0))) + (define-public r-org-ce-eg-db (package (name "r-org-ce-eg-db") diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 1c59d7a690..2a6ac38505 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -10623,38 +10623,6 @@ and more.") the earlier snpMatrix package, allowing for uncertainty in genotypes.") (license license:gpl3))) -(define-public r-homo-sapiens - (package - (name "r-homo-sapiens") - (version "1.3.1") - (source (origin - (method url-fetch) - ;; We cannot use bioconductor-uri here because this tarball is - ;; located under "data/annotation/" instead of "bioc/". - (uri (string-append "https://www.bioconductor.org/packages/" - "release/data/annotation/src/contrib/" - "Homo.sapiens_" - version ".tar.gz")) - (sha256 - (base32 - "151vj7h5p1c8yd5swrchk46z469p135wk50hvkl0nhgndvy0jj01")))) - (properties - `((upstream-name . "Homo.sapiens"))) - (build-system r-build-system) - (propagated-inputs - `(("r-genomicfeatures" ,r-genomicfeatures) - ("r-go-db" ,r-go-db) - ("r-org-hs-eg-db" ,r-org-hs-eg-db) - ("r-txdb-hsapiens-ucsc-hg19-knowngene" ,r-txdb-hsapiens-ucsc-hg19-knowngene) - ("r-organismdbi" ,r-organismdbi) - ("r-annotationdbi" ,r-annotationdbi))) - (home-page "https://bioconductor.org/packages/Homo.sapiens/") - (synopsis "Annotation package for the Homo.sapiens object") - (description - "This package contains the Homo.sapiens object to access data from -several related annotation packages.") - (license license:artistic2.0))) - (define-public r-dropbead (let ((commit "d746c6f3b32110428ea56d6a0001ce52a251c247") (revision "2")) -- cgit v1.2.3 From 61ec8928c7fee048fea37558508eb0a80022684b Mon Sep 17 00:00:00 2001 From: zimoun Date: Wed, 23 Dec 2020 19:06:33 +0100 Subject: gnu: r-snpstats: Move to (gnu packages bioconductor). * gnu/packages/bioinformatics.scm (r-snpstats): Move from here... * gnu/packages/bioconductor.scm (r-snpstats): ...to here. --- gnu/packages/bioconductor.scm | 27 +++++++++++++++++++++++++++ gnu/packages/bioinformatics.scm | 27 --------------------------- 2 files changed, 27 insertions(+), 27 deletions(-) diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index 3b8dce30e5..ff9e26bbde 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -9540,6 +9540,33 @@ integrates with pathway and gene set (enrichment) analysis tools for large-scale and fully automated analysis.") (license license:gpl3+))) +(define-public r-snpstats + (package + (name "r-snpstats") + (version "1.40.0") + (source + (origin + (method url-fetch) + (uri (bioconductor-uri "snpStats" version)) + (sha256 + (base32 + "1298a71swwav53yf9kfqkdpach3818plqcbw0lgb6sibs8y8ff24")))) + (properties `((upstream-name . "snpStats"))) + (build-system r-build-system) + (inputs `(("zlib" ,zlib))) + (propagated-inputs + `(("r-biocgenerics" ,r-biocgenerics) + ("r-matrix" ,r-matrix) + ("r-survival" ,r-survival) + ("r-zlibbioc" ,r-zlibbioc))) + (home-page "https://bioconductor.org/packages/snpStats") + (synopsis "Methods for SNP association studies") + (description + "This package provides classes and statistical methods for large +@dfn{single-nucleotide polymorphism} (SNP) association studies. This extends +the earlier snpMatrix package, allowing for uncertainty in genotypes.") + (license license:gpl3))) + (define-public r-sushi (package (name "r-sushi") diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 2a6ac38505..76236929de 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -10596,33 +10596,6 @@ of @dfn{quantitative trait loci} (QTL) archives, such as eQTL, mQTL, dsQTL, and more.") (license license:artistic2.0))) -(define-public r-snpstats - (package - (name "r-snpstats") - (version "1.40.0") - (source - (origin - (method url-fetch) - (uri (bioconductor-uri "snpStats" version)) - (sha256 - (base32 - "1298a71swwav53yf9kfqkdpach3818plqcbw0lgb6sibs8y8ff24")))) - (properties `((upstream-name . "snpStats"))) - (build-system r-build-system) - (inputs `(("zlib" ,zlib))) - (propagated-inputs - `(("r-biocgenerics" ,r-biocgenerics) - ("r-matrix" ,r-matrix) - ("r-survival" ,r-survival) - ("r-zlibbioc" ,r-zlibbioc))) - (home-page "https://bioconductor.org/packages/snpStats") - (synopsis "Methods for SNP association studies") - (description - "This package provides classes and statistical methods for large -@dfn{single-nucleotide polymorphism} (SNP) association studies. This extends -the earlier snpMatrix package, allowing for uncertainty in genotypes.") - (license license:gpl3))) - (define-public r-dropbead (let ((commit "d746c6f3b32110428ea56d6a0001ce52a251c247") (revision "2")) -- cgit v1.2.3 From 81f481d6cdbbd035c1642d9d257af6805f4d22dc Mon Sep 17 00:00:00 2001 From: zimoun Date: Wed, 23 Dec 2020 19:06:34 +0100 Subject: gnu: r-gqtlstats: Move to (gnu packages bioconductor). * gnu/packages/bioinformatics.scm (r-gqtlstats): Move from here... * gnu/packages/bioconductor.scm (r-gqtlstats): ...to here. --- gnu/packages/bioconductor.scm | 47 +++++++++++++++++++++++++++++++++++++++++ gnu/packages/bioinformatics.scm | 47 ----------------------------------------- 2 files changed, 47 insertions(+), 47 deletions(-) diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index ff9e26bbde..a3dd93e763 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -9308,6 +9308,53 @@ metadata and outputs of the ChromImpute procedure applied to ENCODE cell lines by Ernst and Kellis.") (license license:artistic2.0))) +(define-public r-gqtlbase + (package + (name "r-gqtlbase") + (version "1.21.1") + (source + (origin + (method url-fetch) + (uri (bioconductor-uri "gQTLBase" version)) + (sha256 + (base32 + "0nipibm1bk9k70ajbw1f6vjmz0dh7gk21l17q3m54bnawxsggrfh")))) + (properties `((upstream-name . "gQTLBase"))) + (build-system r-build-system) + (arguments + `(#:phases + (modify-phases %standard-phases + ;; This is an upstream bug. + (add-after 'unpack 'fix-imports + (lambda _ + (substitute* "NAMESPACE" + ((".*maxffmode.*") "") + (("importFrom\\(ff,.*") "import(ff)\n")) + #t))))) + (propagated-inputs + `(("r-batchjobs" ,r-batchjobs) + ("r-bbmisc" ,r-bbmisc) + ("r-biocgenerics" ,r-biocgenerics) + ("r-bit" ,r-bit) + ("r-doparallel" ,r-doparallel) + ("r-ff" ,r-ff) + ("r-ffbase" ,r-ffbase) + ("r-foreach" ,r-foreach) + ("r-genomicfiles" ,r-genomicfiles) + ("r-genomicranges" ,r-genomicranges) + ("r-rtracklayer" ,r-rtracklayer) + ("r-s4vectors" ,r-s4vectors) + ("r-summarizedexperiment" ,r-summarizedexperiment))) + (native-inputs + `(("r-knitr" ,r-knitr))) + (home-page "https://bioconductor.org/packages/gQTLBase") + (synopsis "Infrastructure for eQTL, mQTL and similar studies") + (description + "The purpose of this package is to simplify the storage and interrogation +of @dfn{quantitative trait loci} (QTL) archives, such as eQTL, mQTL, dsQTL, +and more.") + (license license:artistic2.0))) + (define-public r-gqtlstats (package (name "r-gqtlstats") diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 76236929de..bc483e6f13 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -10549,53 +10549,6 @@ views. High-level plots include sequence fragment length, edge-linked interval to data view, mismatch pileup, and several splicing summaries.") (license license:artistic2.0))) -(define-public r-gqtlbase - (package - (name "r-gqtlbase") - (version "1.21.1") - (source - (origin - (method url-fetch) - (uri (bioconductor-uri "gQTLBase" version)) - (sha256 - (base32 - "0nipibm1bk9k70ajbw1f6vjmz0dh7gk21l17q3m54bnawxsggrfh")))) - (properties `((upstream-name . "gQTLBase"))) - (build-system r-build-system) - (arguments - `(#:phases - (modify-phases %standard-phases - ;; This is an upstream bug. - (add-after 'unpack 'fix-imports - (lambda _ - (substitute* "NAMESPACE" - ((".*maxffmode.*") "") - (("importFrom\\(ff,.*") "import(ff)\n")) - #t))))) - (propagated-inputs - `(("r-batchjobs" ,r-batchjobs) - ("r-bbmisc" ,r-bbmisc) - ("r-biocgenerics" ,r-biocgenerics) - ("r-bit" ,r-bit) - ("r-doparallel" ,r-doparallel) - ("r-ff" ,r-ff) - ("r-ffbase" ,r-ffbase) - ("r-foreach" ,r-foreach) - ("r-genomicfiles" ,r-genomicfiles) - ("r-genomicranges" ,r-genomicranges) - ("r-rtracklayer" ,r-rtracklayer) - ("r-s4vectors" ,r-s4vectors) - ("r-summarizedexperiment" ,r-summarizedexperiment))) - (native-inputs - `(("r-knitr" ,r-knitr))) - (home-page "https://bioconductor.org/packages/gQTLBase") - (synopsis "Infrastructure for eQTL, mQTL and similar studies") - (description - "The purpose of this package is to simplify the storage and interrogation -of @dfn{quantitative trait loci} (QTL) archives, such as eQTL, mQTL, dsQTL, -and more.") - (license license:artistic2.0))) - (define-public r-dropbead (let ((commit "d746c6f3b32110428ea56d6a0001ce52a251c247") (revision "2")) -- cgit v1.2.3 From 610cd6a170474550dffd8a58eb3651ef10ca7f6e Mon Sep 17 00:00:00 2001 From: zimoun Date: Wed, 23 Dec 2020 19:06:35 +0100 Subject: gnu: r-ggbio: Move to (gnu packages bioconductor). * gnu/packages/bioinformatics.scm (r-ggbio): Move from here... * gnu/packages/bioconductor.scm (r-ggbio): ...to here. --- gnu/packages/bioconductor.scm | 65 +++++++++++++++++++++++++++++++++++++++++ gnu/packages/bioinformatics.scm | 65 ----------------------------------------- 2 files changed, 65 insertions(+), 65 deletions(-) diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index a3dd93e763..55df9bf7d1 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -9308,6 +9308,71 @@ metadata and outputs of the ChromImpute procedure applied to ENCODE cell lines by Ernst and Kellis.") (license license:artistic2.0))) +(define-public r-ggbio + (package + (name "r-ggbio") + (version "1.38.0") + (source + (origin + (method url-fetch) + (uri (bioconductor-uri "ggbio" version)) + (sha256 + (base32 + "0vabil4jzrlv01aibqjhdkvrv2bf2kkpsidrkjj06isqr5fz54lw")))) + (build-system r-build-system) + (arguments + `(#:phases + (modify-phases %standard-phases + ;; See https://github.com/tengfei/ggbio/issues/117 + ;; This fix will be included in the next release. + (add-after 'unpack 'fix-typo + (lambda _ + (substitute* "R/GGbio-class.R" + (("fechable") "fetchable")) + #t))))) + (propagated-inputs + `(("r-annotationdbi" ,r-annotationdbi) + ("r-annotationfilter" ,r-annotationfilter) + ("r-biobase" ,r-biobase) + ("r-biocgenerics" ,r-biocgenerics) + ("r-biostrings" ,r-biostrings) + ("r-biovizbase" ,r-biovizbase) + ("r-bsgenome" ,r-bsgenome) + ("r-ensembldb" ,r-ensembldb) + ("r-genomeinfodb" ,r-genomeinfodb) + ("r-genomicalignments" ,r-genomicalignments) + ("r-genomicfeatures" ,r-genomicfeatures) + ("r-genomicranges" ,r-genomicranges) + ("r-ggally" ,r-ggally) + ("r-ggplot2" ,r-ggplot2) + ("r-gridextra" ,r-gridextra) + ("r-gtable" ,r-gtable) + ("r-hmisc" ,r-hmisc) + ("r-iranges" ,r-iranges) + ("r-organismdbi" ,r-organismdbi) + ("r-reshape2" ,r-reshape2) + ("r-rlang" ,r-rlang) + ("r-rsamtools" ,r-rsamtools) + ("r-rtracklayer" ,r-rtracklayer) + ("r-s4vectors" ,r-s4vectors) + ("r-scales" ,r-scales) + ("r-summarizedexperiment" ,r-summarizedexperiment) + ("r-variantannotation" ,r-variantannotation))) + (native-inputs + `(("r-knitr" ,r-knitr))) + (home-page "http://www.tengfei.name/ggbio/") + (synopsis "Visualization tools for genomic data") + (description + "The ggbio package extends and specializes the grammar of graphics for +biological data. The graphics are designed to answer common scientific +questions, in particular those often asked of high throughput genomics data. +All core Bioconductor data structures are supported, where appropriate. The +package supports detailed views of particular genomic regions, as well as +genome-wide overviews. Supported overviews include ideograms and grand linear +views. High-level plots include sequence fragment length, edge-linked +interval to data view, mismatch pileup, and several splicing summaries.") + (license license:artistic2.0))) + (define-public r-gqtlbase (package (name "r-gqtlbase") diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index bc483e6f13..512abcd8fd 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -10484,71 +10484,6 @@ high-level packages for biological data visualization. This saves development effort and encourages consistency.") (license license:artistic2.0))) -(define-public r-ggbio - (package - (name "r-ggbio") - (version "1.38.0") - (source - (origin - (method url-fetch) - (uri (bioconductor-uri "ggbio" version)) - (sha256 - (base32 - "0vabil4jzrlv01aibqjhdkvrv2bf2kkpsidrkjj06isqr5fz54lw")))) - (build-system r-build-system) - (arguments - `(#:phases - (modify-phases %standard-phases - ;; See https://github.com/tengfei/ggbio/issues/117 - ;; This fix will be included in the next release. - (add-after 'unpack 'fix-typo - (lambda _ - (substitute* "R/GGbio-class.R" - (("fechable") "fetchable")) - #t))))) - (propagated-inputs - `(("r-annotationdbi" ,r-annotationdbi) - ("r-annotationfilter" ,r-annotationfilter) - ("r-biobase" ,r-biobase) - ("r-biocgenerics" ,r-biocgenerics) - ("r-biostrings" ,r-biostrings) - ("r-biovizbase" ,r-biovizbase) - ("r-bsgenome" ,r-bsgenome) - ("r-ensembldb" ,r-ensembldb) - ("r-genomeinfodb" ,r-genomeinfodb) - ("r-genomicalignments" ,r-genomicalignments) - ("r-genomicfeatures" ,r-genomicfeatures) - ("r-genomicranges" ,r-genomicranges) - ("r-ggally" ,r-ggally) - ("r-ggplot2" ,r-ggplot2) - ("r-gridextra" ,r-gridextra) - ("r-gtable" ,r-gtable) - ("r-hmisc" ,r-hmisc) - ("r-iranges" ,r-iranges) - ("r-organismdbi" ,r-organismdbi) - ("r-reshape2" ,r-reshape2) - ("r-rlang" ,r-rlang) - ("r-rsamtools" ,r-rsamtools) - ("r-rtracklayer" ,r-rtracklayer) - ("r-s4vectors" ,r-s4vectors) - ("r-scales" ,r-scales) - ("r-summarizedexperiment" ,r-summarizedexperiment) - ("r-variantannotation" ,r-variantannotation))) - (native-inputs - `(("r-knitr" ,r-knitr))) - (home-page "http://www.tengfei.name/ggbio/") - (synopsis "Visualization tools for genomic data") - (description - "The ggbio package extends and specializes the grammar of graphics for -biological data. The graphics are designed to answer common scientific -questions, in particular those often asked of high throughput genomics data. -All core Bioconductor data structures are supported, where appropriate. The -package supports detailed views of particular genomic regions, as well as -genome-wide overviews. Supported overviews include ideograms and grand linear -views. High-level plots include sequence fragment length, edge-linked -interval to data view, mismatch pileup, and several splicing summaries.") - (license license:artistic2.0))) - (define-public r-dropbead (let ((commit "d746c6f3b32110428ea56d6a0001ce52a251c247") (revision "2")) -- cgit v1.2.3 From 0c8bb20b7cbd39537999fce29979a6acaf64e601 Mon Sep 17 00:00:00 2001 From: Mathieu Othacehe Date: Tue, 29 Dec 2020 19:00:39 +0100 Subject: gnu: r-ldheatmap: Fix missing variable. This is a follow-up of 61ec8928c7fee048fea37558508eb0a80022684b. * gnu/packages/cran.scm (r-ldheatmap)[propagated-inputs]: Use 'module-ref' to resolve r-snpstats variable which is located in (gnu package bioinformatics) that cannot be included due to a circular dependency. --- gnu/packages/cran.scm | 4 +++- 1 file changed, 3 insertions(+), 1 deletion(-) diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 10212e2a68..c0926d9fb3 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -14734,7 +14734,9 @@ inbred lines, F2 intercrosses, and association mapping populations.") (propagated-inputs `(("r-genetics" ,r-genetics) ("r-rcpp" ,r-rcpp) - ("r-snpstats" ,r-snpstats))) + ("r-snpstats" ,(module-ref + (resolve-interface '(gnu packages bioconductor)) + 'r-snpstats)))) (home-page "https://stat.sfu.ca/statgen/research/ldheatmap.html") (synopsis "Graphical display of pairwise linkage disequilibria between SNPs") (description -- cgit v1.2.3 From 03c51c04430405fe405a3640e6a4d1d248b702fc Mon Sep 17 00:00:00 2001 From: Ryan Prior Date: Fri, 25 Dec 2020 17:57:26 +0000 Subject: gnu: Add ruby-3.0. * gnu/packages/ruby.scm (ruby-3.0): New variable. Signed-off-by: Christopher Baines --- gnu/packages/ruby.scm | 14 ++++++++++++++ 1 file changed, 14 insertions(+) diff --git a/gnu/packages/ruby.scm b/gnu/packages/ruby.scm index 5a89288166..c5b1af79d3 100644 --- a/gnu/packages/ruby.scm +++ b/gnu/packages/ruby.scm @@ -188,6 +188,20 @@ a focus on simplicity and productivity.") (native-inputs `(("autoconf" ,autoconf))))) +(define-public ruby-3.0 + (package + (inherit ruby-2.7) + (version "3.0.0") + (source + (origin + (method url-fetch) + (uri (string-append "http://cache.ruby-lang.org/pub/ruby/" + (version-major+minor version) + "/ruby-" version ".tar.xz")) + (sha256 + (base32 + "1cbcixwnr0y8q0lg67wjgplp06kjd6p6hjjh680csv3v0bpsxgv8")))))) + (define-public ruby-2.5 (package (inherit ruby) -- cgit v1.2.3 From ae8f61f7c32488d4d775c83265c6ec31d20222cd Mon Sep 17 00:00:00 2001 From: Leo Prikler Date: Sun, 22 Nov 2020 14:35:26 +0100 Subject: gnu: libpeas: Update to 1.28.0. * gnu/packages/gnome.scm (libpeas): Update to 1.28.0. --- gnu/packages/gnome.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/gnu/packages/gnome.scm b/gnu/packages/gnome.scm index 2756a3d0d4..2b8625a0ab 100644 --- a/gnu/packages/gnome.scm +++ b/gnu/packages/gnome.scm @@ -2982,7 +2982,7 @@ some form of information without getting in the user's way.") (define-public libpeas (package (name "libpeas") - (version "1.24.1") + (version "1.28.0") (source (origin (method url-fetch) @@ -2991,7 +2991,7 @@ some form of information without getting in the user's way.") name "-" version ".tar.xz")) (sha256 (base32 - "1162dr7smmfb02czmhshr0f93hqj7w0nw29bys5lzfvwarxcyflw")))) + "05cb7drn6arc4gi02wgsvzibigi2riz5gnfnmlb0zmbfnj9ikna2")))) (build-system meson-build-system) (arguments '(#:phases -- cgit v1.2.3 From 251e86823fc517d011144204119256632a5e32ab Mon Sep 17 00:00:00 2001 From: Leo Prikler Date: Sun, 22 Nov 2020 14:36:03 +0100 Subject: gnu: gst-editing-services: Build with introspection. Some packages, such as Pitivi, might want to interact with GES through GObject Introspection, so let's enable that. * gnu/packages/gstreamer.scm (gstreamer-editing-services)[native-inputs]: Add gobject-introspection and glib:bin. --- gnu/packages/gstreamer.scm | 2 ++ 1 file changed, 2 insertions(+) diff --git a/gnu/packages/gstreamer.scm b/gnu/packages/gstreamer.scm index 256f298346..f8c5159a3b 100644 --- a/gnu/packages/gstreamer.scm +++ b/gnu/packages/gstreamer.scm @@ -898,6 +898,8 @@ decoders, muxers, and demuxers provided by FFmpeg.") ("libxml2" ,libxml2))) (native-inputs `(("flex" ,flex) + ("gobject-introspection" ,gobject-introspection) + ("glib:bin" ,glib "bin") ("gst-plugins-bad" ,gst-plugins-bad) ("gst-plugins-good" ,gst-plugins-good) ("perl" ,perl) -- cgit v1.2.3 From 4f196b0a9e74d6f02a08fd6fda08279034ae1629 Mon Sep 17 00:00:00 2001 From: Leo Prikler Date: Sun, 22 Nov 2020 18:54:14 +0100 Subject: gnu: Add gst-plugins/selection. * gnu/packages/gstreamer.scm (gst-plugins/selection): New variable. --- gnu/packages/gstreamer.scm | 22 ++++++++++++++++++++++ 1 file changed, 22 insertions(+) diff --git a/gnu/packages/gstreamer.scm b/gnu/packages/gstreamer.scm index f8c5159a3b..3b572b9f07 100644 --- a/gnu/packages/gstreamer.scm +++ b/gnu/packages/gstreamer.scm @@ -912,6 +912,28 @@ decoders, muxers, and demuxers provided by FFmpeg.") non-linear editors.") (license license:gpl2+))) +(define-public gst-plugins/selection + (lambda* (pkg #:key plugins configure-flags) + "Build PKG with only PLUGINS enabled. Optionally, if CONFIGURE-FLAGS are +given, also pass them to the build system instead of the ones used by PKG." + (package/inherit pkg + (arguments + (substitute-keyword-arguments (package-arguments pkg) + ((#:configure-flags flags `(,@(or configure-flags '()))) + `(append + (list + ,@(map (lambda (plugin) + (string-append "-D" plugin "=enabled")) + plugins)) + (list ,@(or configure-flags flags)))) + ((#:phases phases) + `(modify-phases ,phases + (add-after 'unpack 'disable-auto-plugins + (lambda _ + (substitute* "meson_options.txt" + (("'auto'") "'disabled'")) + #t))))))))) + (define-public python-gst (package (name "python-gst") -- cgit v1.2.3 From 95787bf4eda7728c2f352e37891edd644c610bda Mon Sep 17 00:00:00 2001 From: Leo Prikler Date: Sun, 22 Nov 2020 21:12:34 +0100 Subject: gnu: Update and deprecate gst-transcoder. As of 1.18, gst-transcoder is part of gst-plugins-bad. * gnu/packages/video.scm (gst-transcoder): Move from here... * gnu/packages/gstreamer.scm (gst-transcoder): ... to here. Redefine in terms of gst-plugins-bad and deprecate in favor of it. --- gnu/packages/gstreamer.scm | 7 +++++++ gnu/packages/video.scm | 28 ---------------------------- 2 files changed, 7 insertions(+), 28 deletions(-) diff --git a/gnu/packages/gstreamer.scm b/gnu/packages/gstreamer.scm index 3b572b9f07..944eba03d9 100644 --- a/gnu/packages/gstreamer.scm +++ b/gnu/packages/gstreamer.scm @@ -934,6 +934,13 @@ given, also pass them to the build system instead of the ones used by PKG." (("'auto'") "'disabled'")) #t))))))))) +(define-public gst-transcoder + (deprecated-package + "gst-transcoder" + (gst-plugins/selection gst-plugins-bad + #:plugins '("transcoder") + #:configure-flags '("-Dintrospection=enabled")))) + (define-public python-gst (package (name "python-gst") diff --git a/gnu/packages/video.scm b/gnu/packages/video.scm index c369e9ece2..949b51c568 100644 --- a/gnu/packages/video.scm +++ b/gnu/packages/video.scm @@ -4004,34 +4004,6 @@ tools for styling them, including a built-in real-time video preview.") ; by upstream). See https://github.com/Aegisub/Aegisub/blob/master/LICENCE ; src/MatroskaParser.(c|h) is under bsd-3 with permission from the author -(define-public gst-transcoder - (package - (name "gst-transcoder") - (version "1.12.2") - (source - (origin - (method git-fetch) - (uri (git-reference - (url "https://github.com/pitivi/gst-transcoder") - (commit version))) - (file-name (git-file-name name version)) - (sha256 - (base32 - "0nw1zykqc6c8xs3ri55pm00pwyz93z4y4nd880apfiwj7yv5p3az")))) - (build-system meson-build-system) - (inputs - `(("gobject-introspection" ,gobject-introspection) - ("glib" ,glib) - ("gstreamer" ,gstreamer) - ("gst-plugins-base" ,gst-plugins-base))) - (native-inputs - `(("python" ,python) - ("pkg-config" ,pkg-config))) - (home-page "https://github.com/pitivi/gst-transcoder/") - (synopsis "GStreamer Transcoding API") - (description "GStreamer Transcoding API") - (license license:lgpl2.1))) - (define-public gavl (package (name "gavl") -- cgit v1.2.3 From c412900d3e8c59ad59c994fd65634f9aafae1800 Mon Sep 17 00:00:00 2001 From: Leo Prikler Date: Sun, 22 Nov 2020 14:38:27 +0100 Subject: gnu: Add pitivi. * gnu/packages/video.scm (pitivi): New variable. Signed-off-by: Leo Prikler --- gnu/packages/video.scm | 67 ++++++++++++++++++++++++++++++++++++++++++++++++++ 1 file changed, 67 insertions(+) diff --git a/gnu/packages/video.scm b/gnu/packages/video.scm index 949b51c568..377b3e54c0 100644 --- a/gnu/packages/video.scm +++ b/gnu/packages/video.scm @@ -4004,6 +4004,73 @@ tools for styling them, including a built-in real-time video preview.") ; by upstream). See https://github.com/Aegisub/Aegisub/blob/master/LICENCE ; src/MatroskaParser.(c|h) is under bsd-3 with permission from the author +(define-public pitivi + ;; Pitivi switched to a non-semantic versioning scheme close before 1.0 + (let ((latest-semver "0.999.0") + (%version "2020.09.2")) + (package + (name "pitivi") + (version (string-append latest-semver "-" %version)) + (source (origin + (method url-fetch) + (uri (string-append "mirror://gnome/sources/" name "/" + (version-major+minor %version) "/" + name "-" %version ".tar.xz")) + (sha256 + (base32 + "0hzvv4wia4rk0kvq16y27imq2qd4q5lg3vx99hdcjdb1x3zqqfg0")))) + (build-system meson-build-system) + (inputs + `(("glib" ,glib) + ("gst-editing-services" ,gst-editing-services) + ("gstreamer" ,gstreamer) + ("gst-plugins-base" ,gst-plugins-base) + ("gst-plugins-good" ,gst-plugins-good) + ("gst-plugins-bad" + ,(gst-plugins/selection gst-plugins-bad + #:plugins '("debugutils" "transcoder") + #:configure-flags '("-Dintrospection=enabled"))) + ("gst-libav" ,gst-libav) + ("gsound" ,gsound) + ("gtk+" ,gtk+) + ("gdk-pixbuf+svg" ,gdk-pixbuf+svg) + ("libpeas" ,libpeas) + ("libnotify" ,libnotify) + ("pango" ,pango) + ("python-gst" ,python-gst) + ("python-numpy" ,python-numpy) + ("python-matplotlib" ,python-matplotlib) + ("python-pycairo" ,python-pycairo) + ("python-pygobject" ,python-pygobject))) + (native-inputs + `(("gettext" ,gettext-minimal) + ("glib:bin" ,glib "bin") + ("itstool" ,itstool) + ("pkg-config" ,pkg-config))) + (arguments + `(#:glib-or-gtk? #t + #:phases + (modify-phases %standard-phases + (add-after 'glib-or-gtk-wrap 'wrap-other-dependencies + (lambda* (#:key outputs #:allow-other-keys) + (let ((prog (string-append (assoc-ref outputs "out") + "/bin/pitivi"))) + (wrap-program prog + `("PYTHONPATH" = (,(getenv "PYTHONPATH"))) + `("GI_TYPELIB_PATH" = (,(getenv "GI_TYPELIB_PATH"))) + ;; We've only added inputs for what Pitivi deems either + ;; necessary or optional. Let the user's packages take + ;; precedence in case they have e.g. the full gst-plugins-bad. + `("GST_PLUGIN_SYSTEM_PATH" suffix + (,(getenv "GST_PLUGIN_SYSTEM_PATH"))))) + #t))))) + (home-page "http://www.pitivi.org") + (synopsis "Video editor based on GStreamer Editing Services") + (description "Pitivi is a video editor built upon the GStreamer Editing +Services. It aims to be an intuitive and flexible application that can appeal +to newbies and professionals alike.") + (license license:lgpl2.1+)))) + (define-public gavl (package (name "gavl") -- cgit v1.2.3 From 9810ed344fac6b04148897399a1a0685047bb7bf Mon Sep 17 00:00:00 2001 From: Michael Rohleder Date: Fri, 25 Dec 2020 17:36:14 +0100 Subject: gnu: kiwix-desktop: Fix program start. Fixes . * gnu/packages/web.scm (kiwix-desktop)[arguments]: Add phase to wrap QTWEBENGINEPROCESS_PATH. Signed-off-by: Leo Prikler --- gnu/packages/web.scm | 12 +++++++++++- 1 file changed, 11 insertions(+), 1 deletion(-) diff --git a/gnu/packages/web.scm b/gnu/packages/web.scm index 3693911b88..516cabaa19 100644 --- a/gnu/packages/web.scm +++ b/gnu/packages/web.scm @@ -7981,7 +7981,17 @@ It contains the code shared by all Kiwix ports.") (lambda* (#:key inputs #:allow-other-keys) (substitute* "kiwix-desktop.pro" (("webenginewidgets" all) (string-append all " printsupport"))) - #t))))) + #t)) + (add-after 'install 'wrap-qt-process-path + (lambda* (#:key inputs outputs #:allow-other-keys) + (let* ((out (assoc-ref outputs "out")) + (bin (string-append out "/bin/kiwix-desktop")) + (qt-process-path (string-append + (assoc-ref inputs "qtwebengine") + "/lib/qt5/libexec/QtWebEngineProcess"))) + (wrap-program bin + `("QTWEBENGINEPROCESS_PATH" = (,qt-process-path))) + #t)))))) (inputs `(("curl" ,curl) ("icu4c" ,icu4c) -- cgit v1.2.3 From 597c5c4d1f6de3f64a6451fe42321cff669f09c4 Mon Sep 17 00:00:00 2001 From: Vincent Legoll Date: Mon, 28 Dec 2020 16:18:53 +0100 Subject: gnu: file-roller: Update to 3.38.0. * gnu/packages/gnome.scm (file-roller): Update to 3.38.0. Signed-off-by: Leo Prikler --- gnu/packages/gnome.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/gnu/packages/gnome.scm b/gnu/packages/gnome.scm index 2b8625a0ab..1b1bcce3e3 100644 --- a/gnu/packages/gnome.scm +++ b/gnu/packages/gnome.scm @@ -6925,7 +6925,7 @@ share them with others via social networking and more.") (define-public file-roller (package (name "file-roller") - (version "3.32.3") + (version "3.38.0") (source (origin (method url-fetch) (uri (string-append "mirror://gnome/sources/file-roller/" @@ -6933,7 +6933,7 @@ share them with others via social networking and more.") "file-roller-" version ".tar.xz")) (sha256 (base32 - "0ap2hxvjljh4p6wsd9ikh2my3vsxp9r2nvjxxj3v87nwfyw1y4dy")))) + "06ikvjjcgb8nxabkn2rywy76a1c7s6w8dszaxvaxldbxarp1qgbj")))) (build-system meson-build-system) (native-inputs `(("desktop-file-utils" ,desktop-file-utils) ; for update-desktop-database -- cgit v1.2.3 From 595f44df0ad41a268ef58a396c60d0ee51556de0 Mon Sep 17 00:00:00 2001 From: Vincent Legoll Date: Mon, 28 Dec 2020 16:28:15 +0100 Subject: gnu: libsoup: Update to 2.72.0. * gnu/packages/gnome.scm (libsoup): Update to 2.72.0. Signed-off-by: Leo Prikler --- gnu/packages/gnome.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/gnu/packages/gnome.scm b/gnu/packages/gnome.scm index 1b1bcce3e3..55189d096f 100644 --- a/gnu/packages/gnome.scm +++ b/gnu/packages/gnome.scm @@ -4661,7 +4661,7 @@ libxml to ease remote use of the RESTful API.") (define-public libsoup (package (name "libsoup") - (version "2.70.0") + (version "2.72.0") (source (origin (method url-fetch) (uri (string-append "mirror://gnome/sources/libsoup/" @@ -4669,7 +4669,7 @@ libxml to ease remote use of the RESTful API.") "libsoup-" version ".tar.xz")) (sha256 (base32 - "0hjk9lgppc5435my0lyywbpmj7ib5vvcylwfin8ki97g9bvj1c2l")))) + "11skbyw2pw32178q3h8pi7xqa41b2x4k6q4k9f75zxmh8s23y30p")))) (build-system meson-build-system) (outputs '("out" "doc")) (arguments -- cgit v1.2.3 From 5ea79e16f0e6e6aafcce245d44aff55408f285c5 Mon Sep 17 00:00:00 2001 From: Leo Famulari Date: Thu, 24 Dec 2020 19:14:58 -0500 Subject: gnu: Add SVT-VP9. * gnu/packages/video.scm (svt-vp9): New variable. --- gnu/packages/video.scm | 34 ++++++++++++++++++++++++++++++++++ 1 file changed, 34 insertions(+) diff --git a/gnu/packages/video.scm b/gnu/packages/video.scm index 377b3e54c0..b488f010f2 100644 --- a/gnu/packages/video.scm +++ b/gnu/packages/video.scm @@ -4676,6 +4676,40 @@ applications. It only supports Intel-compatible CPUs (x86).") (home-page "https://github.com/OpenVisualCloud/SVT-AV1") (license license:bsd-2))) +(define-public svt-vp9 + (package + (name "svt-vp9") + (version "0.3.0") + (source (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/OpenVisualCloud/SVT-VP9") + (commit (string-append "v" version)))) + (file-name (git-file-name name version)) + (sha256 + (base32 + "1ypdiw4cq22llvm8jyszxdq6r1aydkj80dsxjarjn5b7c1f2q3ar")))) + ;; SVT-AV1 only supports 64-bit Intel-compatible CPUs. + (supported-systems '("x86_64-linux")) + (build-system cmake-build-system) + (arguments + `(#:tests? #f ; No test suite + #:phases + (modify-phases %standard-phases + (add-after 'install 'install-documentation + (lambda* (#:key outputs #:allow-other-keys) + (let* ((out (assoc-ref %outputs "out")) + (doc (string-append out "/share/doc/" ,name "-" ,version))) + (copy-recursively "../source/Docs" doc) + #t)))))) + (native-inputs + `(("yasm" ,yasm))) + (home-page "https://github.com/OpenVisualCloud/SVT-VP9") + (synopsis "VP9 video encoder") + (description "SVT-VP9 is a VP9 video encoder implementation. It is focused +on supporting video-on-demand and live encoding on Intel Xeon processors.") + (license license:bsd-2))) + (define-public w-scan (package (name "w-scan") -- cgit v1.2.3 From fad9b4bb5f3265a07578430af6caa12103ebbfdf Mon Sep 17 00:00:00 2001 From: Leo Famulari Date: Tue, 29 Dec 2020 15:59:12 -0500 Subject: gnu: SVT-AV1: Update URLs. * gnu/packages/video.scm (svt-av1)[source, home-page]: Update URLs. --- gnu/packages/video.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/gnu/packages/video.scm b/gnu/packages/video.scm index b488f010f2..db37ef5219 100644 --- a/gnu/packages/video.scm +++ b/gnu/packages/video.scm @@ -4647,7 +4647,7 @@ transcode or reformat the videos in any way, producing perfect backups.") (origin (method git-fetch) (uri (git-reference - (url "https://github.com/OpenVisualCloud/SVT-AV1") + (url "https://github.com/AOMediaCodec/SVT-AV1") (commit (string-append "v" version)))) (file-name (git-file-name name version)) (sha256 @@ -4673,7 +4673,7 @@ transcode or reformat the videos in any way, producing perfect backups.") (description "SVT-AV1 is an AV1 codec implementation. The encoder is a work-in-progress, aiming to support video-on-demand and live streaming applications. It only supports Intel-compatible CPUs (x86).") - (home-page "https://github.com/OpenVisualCloud/SVT-AV1") + (home-page "https://github.com/AOMediaCodec/SVT-AV1") (license license:bsd-2))) (define-public svt-vp9 -- cgit v1.2.3 From da2877237ecd0e1c837758ee5e07ab450c827537 Mon Sep 17 00:00:00 2001 From: Leo Famulari Date: Thu, 24 Dec 2020 19:14:10 -0500 Subject: gnu: SVT-AV1: It only supports 64-bit Intel-compatible systems. * gnu/packages/video.scm (svt-av1)[supported-systems]: Remove i686-linux. --- gnu/packages/video.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/gnu/packages/video.scm b/gnu/packages/video.scm index db37ef5219..b99846a3ff 100644 --- a/gnu/packages/video.scm +++ b/gnu/packages/video.scm @@ -4653,8 +4653,8 @@ transcode or reformat the videos in any way, producing perfect backups.") (sha256 (base32 "1wzamg89azi1f93wxvdy7silsgklckc754ca066k33drvyacicyw")))) (build-system cmake-build-system) - ;; SVT-AV1 only supports Intel-compatible CPUs. - (supported-systems '("x86_64-linux" "i686-linux")) + ;; SVT-AV1 only supports 64-bit Intel-compatible CPUs. + (supported-systems '("x86_64-linux")) (arguments ;; The test suite tries to download test data and git clone a 3rd-party ;; fork of libaom. Skip it. -- cgit v1.2.3 From a7d6e1b6a16534a3afdcecf5d45ed3f5ba9bc3c1 Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Tue, 29 Dec 2020 22:16:15 +0100 Subject: gnu: r-ldheatmap: Move to (gnu packages bioconductor). This is a follow-up to commit 0c8bb20b7cbd39537999fce29979a6acaf64e601. * gnu/packages/cran.scm (r-ldheatmap): Move this from here... * gnu/packages/bioconductor.scm (r-ldheatmap): ...to here. --- gnu/packages/bioconductor.scm | 28 ++++++++++++++++++++++++++++ gnu/packages/cran.scm | 28 ---------------------------- 2 files changed, 28 insertions(+), 28 deletions(-) diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index 55df9bf7d1..f1af34844f 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -9618,6 +9618,34 @@ handling of existing population-level data for the purpose of flexibly defining LD blocks.") (license license:artistic2.0))) +;; This is a CRAN package, but it depends on r-snpstats, which is a +;; Bioconductor package. +(define-public r-ldheatmap + (package + (name "r-ldheatmap") + (version "1.0-4") + (source + (origin + (method url-fetch) + (uri (cran-uri "LDheatmap" version)) + (sha256 + (base32 + "1jp578cf29qcgx95w10lpymlwx2pgjsf0nypwkl9b8g635gkisq7")))) + (properties `((upstream-name . "LDheatmap"))) + (build-system r-build-system) + (propagated-inputs + `(("r-genetics" ,r-genetics) + ("r-rcpp" ,r-rcpp) + ("r-snpstats" ,r-snpstats))) + (home-page "https://stat.sfu.ca/statgen/research/ldheatmap.html") + (synopsis "Graphical display of pairwise linkage disequilibria between SNPs") + (description + "This package provides tools to produce a graphical display, as a heat +map, of measures of pairwise linkage disequilibria between SNPs. Users may +optionally include the physical locations or genetic map distances of each SNP +on the plot.") + (license license:gpl3))) + (define-public r-pathview (package (name "r-pathview") diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index c0926d9fb3..0483af3d6b 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -14718,34 +14718,6 @@ effects. It is applicable to backcrosses, doubled haploids, recombinant inbred lines, F2 intercrosses, and association mapping populations.") (license license:gpl2))) -(define-public r-ldheatmap - (package - (name "r-ldheatmap") - (version "1.0-4") - (source - (origin - (method url-fetch) - (uri (cran-uri "LDheatmap" version)) - (sha256 - (base32 - "1jp578cf29qcgx95w10lpymlwx2pgjsf0nypwkl9b8g635gkisq7")))) - (properties `((upstream-name . "LDheatmap"))) - (build-system r-build-system) - (propagated-inputs - `(("r-genetics" ,r-genetics) - ("r-rcpp" ,r-rcpp) - ("r-snpstats" ,(module-ref - (resolve-interface '(gnu packages bioconductor)) - 'r-snpstats)))) - (home-page "https://stat.sfu.ca/statgen/research/ldheatmap.html") - (synopsis "Graphical display of pairwise linkage disequilibria between SNPs") - (description - "This package provides tools to produce a graphical display, as a heat -map, of measures of pairwise linkage disequilibria between SNPs. Users may -optionally include the physical locations or genetic map distances of each SNP -on the plot.") - (license license:gpl3))) - (define-public r-hwde (package (name "r-hwde") -- cgit v1.2.3 From 28ccd1e71df6f08d6c8a63ebe9d42fa0fc5336c4 Mon Sep 17 00:00:00 2001 From: Zhu Zihao Date: Fri, 25 Dec 2020 18:03:14 +0800 Subject: gnu: rtl8821ce-linux-module: Update to 0.0.0-2.14b536f. * gnu/packages/linux.scm (rtl8821ce-linux-module): Update to 0.0.0-2.14b536f. Signed-off-by: Christopher Baines --- gnu/packages/linux.scm | 6 +++--- 1 file changed, 3 insertions(+), 3 deletions(-) diff --git a/gnu/packages/linux.scm b/gnu/packages/linux.scm index 3df0159f82..9fd5a941e4 100644 --- a/gnu/packages/linux.scm +++ b/gnu/packages/linux.scm @@ -1146,8 +1146,8 @@ RTL8812AU, RTL8821AU, and RTL8814AU chips.") (license license:gpl2+)))) (define-public rtl8821ce-linux-module - (let ((commit "fe97b5003f2f3dd070f76ec38c00b83798c1cdea") - (revision "1")) + (let ((commit "14b536f0c9ad2d0abbdab8afc7ade684900ca9cf") + (revision "2")) (package (name "rtl8821ce-linux-module") (version (git-version "0.0.0" revision commit)) @@ -1160,7 +1160,7 @@ RTL8812AU, RTL8821AU, and RTL8814AU chips.") (file-name (git-file-name name version)) (sha256 (base32 - "10mrp63npbqb39c442vx8mra278hw7sczb3b6bjrpr3gan6ljshn")))) + "0z7r7spsgn22gwv9pcmkdjn9ingi8jj7xkxasph8118h46fw8ip2")))) (build-system linux-module-build-system) (arguments `(#:make-flags -- cgit v1.2.3 From 224d30d06bb763ad5d875b20727e6a307b062922 Mon Sep 17 00:00:00 2001 From: Efraim Flashner Date: Tue, 29 Dec 2020 23:01:31 +0200 Subject: gnu: ktouch: Update to 20.12.0. * gnu/packages/education.scm (ktouch): Update to 20.12.0. [source]: Download from new upstream URI. --- gnu/packages/education.scm | 6 +++--- 1 file changed, 3 insertions(+), 3 deletions(-) diff --git a/gnu/packages/education.scm b/gnu/packages/education.scm index 9f07922535..07862291a7 100644 --- a/gnu/packages/education.scm +++ b/gnu/packages/education.scm @@ -677,15 +677,15 @@ language and very flexible regarding to new or unknown keyboard layouts.") (define-public ktouch (package (name "ktouch") - (version "19.08.3") + (version "20.12.0") (source (origin (method url-fetch) - (uri (string-append "mirror://kde/stable/applications/" + (uri (string-append "mirror://kde/stable/release-service/" version "/src/ktouch-" version ".tar.xz")) (sha256 (base32 - "0dqxb3xsjc2rwc9779l5fnr4crhq51bc8ln4azbgnnkzldvq6a4a")))) + "1s8pcwakx94aygfyjmyps5b43j4kv6dmfw7n12japcka2yfp9bi2")))) (build-system qt-build-system) (arguments `(#:phases -- cgit v1.2.3 From 908e48f7ddb6ffe5cf4914b5ee451bad0b936c0f Mon Sep 17 00:00:00 2001 From: Efraim Flashner Date: Tue, 29 Dec 2020 15:18:54 +0200 Subject: gnu: kblocks: Update to 20.12.0. * gnu/packages/games.scm (kblocks): Update to 20.12.0. [source]: Download from new source URI. --- gnu/packages/games.scm | 6 +++--- 1 file changed, 3 insertions(+), 3 deletions(-) diff --git a/gnu/packages/games.scm b/gnu/packages/games.scm index 735e653900..403f618a95 100644 --- a/gnu/packages/games.scm +++ b/gnu/packages/games.scm @@ -10307,14 +10307,14 @@ This package is part of the KDE games module.") (define-public kblocks (package (name "kblocks") - (version "19.08.3") + (version "20.12.0") (source (origin (method url-fetch) - (uri (string-append "mirror://kde/stable/applications/" + (uri (string-append "mirror://kde/stable/release-service/" version "/src/kblocks-" version ".tar.xz")) (sha256 - (base32 "0qrm0dihzhkxsq9l49ndzms802x6jn92vvabb2zf2q9z593m69cx")))) + (base32 "09yfm9mzbamp294cvc5finq6ilxvxr68i0dnb0m72pa4sfzmij32")))) (build-system qt-build-system) (native-inputs `(("extra-cmake-modules" ,extra-cmake-modules) -- cgit v1.2.3 From d4dde6636f5f0e1b1bd660c94dfae7689d49a46d Mon Sep 17 00:00:00 2001 From: Efraim Flashner Date: Tue, 29 Dec 2020 15:21:40 +0200 Subject: gnu: kdiamond: Update to 20.12.0. * gnu/packages/games.scm (kdiamond): Update to 20.12.0. [source]: Download from new source URI. --- gnu/packages/games.scm | 6 +++--- 1 file changed, 3 insertions(+), 3 deletions(-) diff --git a/gnu/packages/games.scm b/gnu/packages/games.scm index 403f618a95..6f588eb2a8 100644 --- a/gnu/packages/games.scm +++ b/gnu/packages/games.scm @@ -10494,14 +10494,14 @@ This package is part of the KDE games module.") (define-public kdiamond (package (name "kdiamond") - (version "19.08.3") + (version "20.12.0") (source (origin (method url-fetch) - (uri (string-append "mirror://kde/stable/applications/" version + (uri (string-append "mirror://kde/stable/release-service/" version "/src/kdiamond-" version ".tar.xz")) (sha256 - (base32 "1v5yb9hb26lk277zhw8d37ks829yfqr5anzx1qhms44gca5kqhva")))) + (base32 "1iyxrx3422asa58kh0siwvi1svds5kccrym6gdfpdhlmhmciqlzi")))) (build-system qt-build-system) (native-inputs `(("extra-cmake-modules" ,extra-cmake-modules) -- cgit v1.2.3 From 08b19d7c3a385646c9dc028333b441b9ca180585 Mon Sep 17 00:00:00 2001 From: Efraim Flashner Date: Tue, 29 Dec 2020 15:24:08 +0200 Subject: gnu: kigo: Update to 20.12.0. * gnu/packages/games.scm (kigo): Update to 20.12.0. [source]: Download from new upstream URI. --- gnu/packages/games.scm | 6 +++--- 1 file changed, 3 insertions(+), 3 deletions(-) diff --git a/gnu/packages/games.scm b/gnu/packages/games.scm index 6f588eb2a8..e8b7cae9eb 100644 --- a/gnu/packages/games.scm +++ b/gnu/packages/games.scm @@ -10879,14 +10879,14 @@ This package is part of the KDE games module.") (define-public kigo (package (name "kigo") - (version "19.08.3") + (version "20.12.0") (source (origin (method url-fetch) - (uri (string-append "mirror://kde/stable/applications/" version + (uri (string-append "mirror://kde/stable/release-service/" version "/src/kigo-" version ".tar.xz")) (sha256 - (base32 "00l5gcbi8xyj9c1lngkrddka3a4m4cd78prfplrpq32ma9xq681f")))) + (base32 "088752yzmfsnppd27p8hld4x5s7sw5fagm08024l5ra1mlicdfz9")))) (build-system qt-build-system) (native-inputs `(("extra-cmake-modules" ,extra-cmake-modules) -- cgit v1.2.3 From 092ccbf3586f43c063d0fdb4d2b928bb284d3ce1 Mon Sep 17 00:00:00 2001 From: Efraim Flashner Date: Tue, 29 Dec 2020 15:28:56 +0200 Subject: gnu: klines: Update to 20.12.0. * gnu/packages/games.scm (klines): Update to 20.12.0. [source]: Download from new upstream URI. --- gnu/packages/games.scm | 6 +++--- 1 file changed, 3 insertions(+), 3 deletions(-) diff --git a/gnu/packages/games.scm b/gnu/packages/games.scm index e8b7cae9eb..334d4ee07e 100644 --- a/gnu/packages/games.scm +++ b/gnu/packages/games.scm @@ -10409,14 +10409,14 @@ This package is part of the KDE games module.") (define-public klines (package (name "klines") - (version "19.08.3") + (version "20.12.0") (source (origin (method url-fetch) - (uri (string-append "mirror://kde/stable/applications/" version + (uri (string-append "mirror://kde/stable/release-service/" version "/src/klines-" version ".tar.xz")) (sha256 - (base32 "1g1f46jp0rb8gpqkgcf915ydpsscn1sxk3gjvm8bcqgx9ddq59xa")))) + (base32 "0y8lnwawrkl4ixn7v4dg48k2zpr083krv7dv4d94b2dpkh7xfvih")))) (build-system qt-build-system) (native-inputs `(("extra-cmake-modules" ,extra-cmake-modules) -- cgit v1.2.3 From 5bd901dc7875bd8dcdcf04e4c789118c0e7402db Mon Sep 17 00:00:00 2001 From: Efraim Flashner Date: Tue, 29 Dec 2020 15:30:34 +0200 Subject: gnu: kollision: Update to 20.12.0. * gnu/packages/games.scm (kollision): Update to 20.12.0. [source]: Download from new upstream URI. --- gnu/packages/games.scm | 6 +++--- 1 file changed, 3 insertions(+), 3 deletions(-) diff --git a/gnu/packages/games.scm b/gnu/packages/games.scm index 334d4ee07e..2a93bd72ff 100644 --- a/gnu/packages/games.scm +++ b/gnu/packages/games.scm @@ -11201,14 +11201,14 @@ This package is part of the KDE games module.") (define-public kollision (package (name "kollision") - (version "19.08.3") + (version "20.12.0") (source (origin (method url-fetch) - (uri (string-append "mirror://kde/stable/applications/" version + (uri (string-append "mirror://kde/stable/release-service/" version "/src/kollision-" version ".tar.xz")) (sha256 - (base32 "1p7qrn3d0ybpvc9k6k5wzj54dsrp1rqh39844maz0ay2fhvmch12")))) + (base32 "180ybafizpwjsg80npy0l9142cjsnlyxwv9dz3bq6r8v4smn2g6b")))) (build-system qt-build-system) (native-inputs `(("extra-cmake-modules" ,extra-cmake-modules) -- cgit v1.2.3 From f0a9276b753d367d02a8773318b6e8c4250bc742 Mon Sep 17 00:00:00 2001 From: Efraim Flashner Date: Tue, 29 Dec 2020 15:32:03 +0200 Subject: gnu: ksnakeduel: Update to 20.12.0. * gnu/packages/games.scm (ksnakeduel): Update to 20.12.0. [source]: Download from new upstream URI. --- gnu/packages/games.scm | 6 +++--- 1 file changed, 3 insertions(+), 3 deletions(-) diff --git a/gnu/packages/games.scm b/gnu/packages/games.scm index 2a93bd72ff..cf231659ce 100644 --- a/gnu/packages/games.scm +++ b/gnu/packages/games.scm @@ -11162,14 +11162,14 @@ This package is part of the KDE games module.") (define-public ksnakeduel (package (name "ksnakeduel") - (version "19.08.3") + (version "20.12.0") (source (origin (method url-fetch) - (uri (string-append "mirror://kde/stable/applications/" version + (uri (string-append "mirror://kde/stable/release-service/" version "/src/ksnakeduel-" version ".tar.xz")) (sha256 - (base32 "0mprrnpax8pv7ab36zwhvdfj8id52w8g6x76nnj8qvkdlkjiqdnn")))) + (base32 "0mp6g258n3xzvgf23jnhkw10xgwqwqdzqfdc6r9jq6a6m8v77swz")))) (build-system qt-build-system) (native-inputs `(("extra-cmake-modules" ,extra-cmake-modules) -- cgit v1.2.3 From 3cd53b4500f7c0d2f7b7523b8ee6de084914e0e6 Mon Sep 17 00:00:00 2001 From: Efraim Flashner Date: Tue, 29 Dec 2020 15:33:56 +0200 Subject: gnu: lskat: Update to 20.12.0. * gnu/packages/games.scm (lskat): Update to 20.12.0. [source]: Download from new upstream URI. --- gnu/packages/games.scm | 6 +++--- 1 file changed, 3 insertions(+), 3 deletions(-) diff --git a/gnu/packages/games.scm b/gnu/packages/games.scm index cf231659ce..accda75244 100644 --- a/gnu/packages/games.scm +++ b/gnu/packages/games.scm @@ -10968,14 +10968,14 @@ This package is part of the KDE games module.") (define-public lskat (package (name "lskat") - (version "19.08.3") + (version "20.12.0") (source (origin (method url-fetch) - (uri (string-append "mirror://kde/stable/applications/" version + (uri (string-append "mirror://kde/stable/release-service/" version "/src/lskat-" version ".tar.xz")) (sha256 - (base32 "1qk5hd27zb42pbcxq5wyzz62nj5f0qdmgy54r9rnk92pzzzk94s9")))) + (base32 "1wg9zxp64kwjxqs4qw0h7j8yhgffbmvh8j9d4dgmz45dscngnjli")))) (build-system qt-build-system) (native-inputs `(("extra-cmake-modules" ,extra-cmake-modules) -- cgit v1.2.3 From 35c87a82ae0dc8c672346214356f77ebd98933a2 Mon Sep 17 00:00:00 2001 From: Efraim Flashner Date: Tue, 29 Dec 2020 15:35:46 +0200 Subject: gnu: palapeli: Update to 20.12.0. * gnu/packages/games.scm (palapeli): Update to 20.12.0. [source]: Download from new upstream URI. --- gnu/packages/games.scm | 6 +++--- 1 file changed, 3 insertions(+), 3 deletions(-) diff --git a/gnu/packages/games.scm b/gnu/packages/games.scm index accda75244..acbe9dac8f 100644 --- a/gnu/packages/games.scm +++ b/gnu/packages/games.scm @@ -10792,14 +10792,14 @@ This package is part of the KDE games module.") (define-public palapeli (package (name "palapeli") - (version "19.08.3") + (version "20.12.0") (source (origin (method url-fetch) - (uri (string-append "mirror://kde/stable/applications/" version + (uri (string-append "mirror://kde/stable/release-service/" version "/src/palapeli-" version ".tar.xz")) (sha256 - (base32 "1g91ydbc0x2y2gn3lcb5w03mn7k78l5bq4cb1s59kx6yjbflv3pw")))) + (base32 "0xxz9g4zxljlg20g88a5lkbwzzm9yg4vxnrfigk8m018cz0nqd5b")))) (build-system qt-build-system) (native-inputs `(("extra-cmake-modules" ,extra-cmake-modules) -- cgit v1.2.3 From 6be0b8f377e311e57898c281d8ad877846665a5e Mon Sep 17 00:00:00 2001 From: Efraim Flashner Date: Tue, 29 Dec 2020 15:37:39 +0200 Subject: gnu: picmi: Update to 20.12.0. * gnu/packages/games.scm (picmi): Update to 20.12.0. [source]: Download from new upstream URI. --- gnu/packages/games.scm | 6 +++--- 1 file changed, 3 insertions(+), 3 deletions(-) diff --git a/gnu/packages/games.scm b/gnu/packages/games.scm index acbe9dac8f..8c19d03351 100644 --- a/gnu/packages/games.scm +++ b/gnu/packages/games.scm @@ -9913,14 +9913,14 @@ This package is part of the KDE games module.") (define-public picmi (package (name "picmi") - (version "19.08.3") + (version "20.12.0") (source (origin (method url-fetch) - (uri (string-append "mirror://kde/stable/applications/" version + (uri (string-append "mirror://kde/stable/release-service/" version "/src/picmi-" version ".tar.xz")) (sha256 - (base32 "0z9mpmv49w914gqdx274brdzl6d1bz9j9nkvbwgmr3iq1ba49m3f")))) + (base32 "1dfq9m4njh0czz8zws46rkz6xq2n6xra5w223m3s2f5civiw5msz")))) (build-system qt-build-system) (native-inputs `(("extra-cmake-modules" ,extra-cmake-modules) -- cgit v1.2.3 From a7ff00787f36d4ab196924786dba65f25cea7ddf Mon Sep 17 00:00:00 2001 From: Efraim Flashner Date: Tue, 29 Dec 2020 23:23:01 +0200 Subject: gnu: ktuberling: Update to 20.12.0. * gnu/packages/games.scm (ktuberling): Update to 20.12.0. [source]: Update to new upstream URI. [native-inputs]: Add kdoctools. [inputs]: Remove kdelibs4support. Add kio, python-wrapper. --- gnu/packages/games.scm | 10 ++++++---- 1 file changed, 6 insertions(+), 4 deletions(-) diff --git a/gnu/packages/games.scm b/gnu/packages/games.scm index 8c19d03351..60dcfa08c8 100644 --- a/gnu/packages/games.scm +++ b/gnu/packages/games.scm @@ -9864,17 +9864,18 @@ can be downloaded from @url{https://zero.sjeng.org/best-network}.") (define-public ktuberling (package (name "ktuberling") - (version "19.08.3") + (version "20.12.0") (source (origin (method url-fetch) - (uri (string-append "mirror://kde/stable/applications/" version + (uri (string-append "mirror://kde/stable/release-service/" version "/src/ktuberling-" version ".tar.xz")) (sha256 - (base32 "1qdf4q6wjh1lnlqw5c8z4rpj9w5vbyjfri1dah6yjm3mwppbc12j")))) + (base32 "0mlv9qllg70p26dbrcsr820c70d3ib88hapc1z6wgjhdpmc12ni1")))) (build-system qt-build-system) (native-inputs `(("extra-cmake-modules" ,extra-cmake-modules) + ("kdoctools" ,kdoctools) ("perl" ,perl))) (inputs `(("kcompletion" ,kcompletion) @@ -9882,11 +9883,12 @@ can be downloaded from @url{https://zero.sjeng.org/best-network}.") ("kcoreaddons" ,kcoreaddons) ("kcrash" ,kcrash) ("kdbusaddons" ,kdbusaddons) - ("kdelibs4support" ,kdelibs4support) ("ki18n" ,ki18n) + ("kio" ,kio) ("kwidgetsaddons" ,kwidgetsaddons) ("kxmlgui" ,kxmlgui) ("libkdegames" ,libkdegames) + ("python" ,python-wrapper) ("qtbase" ,qtbase) ("qtmultimedia" ,qtmultimedia) ("qtdeclarative" ,qtdeclarative) -- cgit v1.2.3 From 6f85713676812079500aea5e3ecc0c01b98293b2 Mon Sep 17 00:00:00 2001 From: Efraim Flashner Date: Tue, 29 Dec 2020 23:25:38 +0200 Subject: gnu: kolf: Update to 20.12.0. * gnu/packages/games.scm (kolf): Update to 20.12.0. [source]: Download from new upstream URI. --- gnu/packages/games.scm | 6 +++--- 1 file changed, 3 insertions(+), 3 deletions(-) diff --git a/gnu/packages/games.scm b/gnu/packages/games.scm index 60dcfa08c8..49a0291c4d 100644 --- a/gnu/packages/games.scm +++ b/gnu/packages/games.scm @@ -9952,14 +9952,14 @@ This package is part of the KDE games module.") (define-public kolf (package (name "kolf") - (version "19.08.3") + (version "20.12.0") (source (origin (method url-fetch) - (uri (string-append "mirror://kde/stable/applications/" version + (uri (string-append "mirror://kde/stable/release-service/" version "/src/kolf-" version ".tar.xz")) (sha256 - (base32 "06sfd0llr5cc3zf1vrpcxgw9bm009ky7y8822kynic9ipcd4z1hw")))) + (base32 "1lpp6pzr5dgd4si4a8c7hcvgxgqy0bgyhkx9m6jqb0zhll6dxj10")))) (build-system qt-build-system) (native-inputs `(("extra-cmake-modules" ,extra-cmake-modules) -- cgit v1.2.3 From f92f7fea69a03af10cbda9335921489559028863 Mon Sep 17 00:00:00 2001 From: Efraim Flashner Date: Tue, 29 Dec 2020 23:28:49 +0200 Subject: gnu: kfourinline: Update to 20.12.0. * gnu/packages/games.scm (kfourinline): Update to 20.12.0. [source]: Download from new upstream URI. [inputs]: Remove kdelibs4support. --- gnu/packages/games.scm | 7 +++---- 1 file changed, 3 insertions(+), 4 deletions(-) diff --git a/gnu/packages/games.scm b/gnu/packages/games.scm index 49a0291c4d..54ec564768 100644 --- a/gnu/packages/games.scm +++ b/gnu/packages/games.scm @@ -10535,14 +10535,14 @@ This package is part of the KDE games module.") (define-public kfourinline (package (name "kfourinline") - (version "19.08.3") + (version "20.12.0") (source (origin (method url-fetch) - (uri (string-append "mirror://kde/stable/applications/" version + (uri (string-append "mirror://kde/stable/release-service/" version "/src/kfourinline-" version ".tar.xz")) (sha256 - (base32 "1vprs6dc1ccn3g6k594i9s94xy4b91vzlqjysyc6fqcq2fs54ny3")))) + (base32 "0plx3lv35fc8q9svbyl71mms3ji6zn58j306bvm1f8kkgg0x395b")))) (build-system qt-build-system) (native-inputs `(("extra-cmake-modules" ,extra-cmake-modules) @@ -10553,7 +10553,6 @@ This package is part of the KDE games module.") ("kconfigwidgets" ,kconfigwidgets) ("kcoreaddons" ,kcoreaddons) ("kcrash" ,kcrash) - ("kdelibs4support" ,kdelibs4support) ("kdnssd" ,kdnssd) ("ki18n" ,ki18n) ("kxmlgui" ,kxmlgui) -- cgit v1.2.3 From b7ab88bc321c3dd482928598f21dad5249ebbd35 Mon Sep 17 00:00:00 2001 From: Christopher Baines Date: Tue, 29 Dec 2020 21:37:48 +0000 Subject: gnu: readosm: Update source hash. Looks like the tarball was changed by upstream, lots of timestamps changed from 2020-08-02 to 2020-08-23, and there were some minor changes to file contents. * gnu/packages/geo.scm (source): Update hash. --- gnu/packages/geo.scm | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/gnu/packages/geo.scm b/gnu/packages/geo.scm index f7f18cf79f..c0c1ef96c6 100644 --- a/gnu/packages/geo.scm +++ b/gnu/packages/geo.scm @@ -1680,7 +1680,7 @@ QLandkarte GT application.") (uri (string-append "https://www.gaia-gis.it/gaia-sins/" "readosm-" version ".tar.gz")) (sha256 - (base32 "0zv6p352pqjcv70nvcaf2x3011z35jqa24dcdm27a4ns1wha3cjc")))) + (base32 "0igif2bxf4dr82glxz9gyx5mmni0r2dsnx9p9k6pxv3c4lfhaz6v")))) (build-system gnu-build-system) (inputs `(("expat" ,expat) -- cgit v1.2.3 From 376a4674430944c3f1a21de4ecdb00f53b80557c Mon Sep 17 00:00:00 2001 From: Efraim Flashner Date: Wed, 30 Dec 2020 00:20:31 +0200 Subject: gnu: python2-pyqt-4: Update to 4.12.3. * gnu/packages/qt.scm (python2-pyqt-4): Update to 4.12.3. --- gnu/packages/qt.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/gnu/packages/qt.scm b/gnu/packages/qt.scm index 9a5b329f4d..bc45c94d66 100644 --- a/gnu/packages/qt.scm +++ b/gnu/packages/qt.scm @@ -2225,7 +2225,7 @@ itself.") (define-public python2-pyqt-4 (package (inherit python-pyqt) (name "python2-pyqt") - (version "4.12") + (version "4.12.3") (source (origin (method url-fetch) @@ -2235,7 +2235,7 @@ itself.") version ".tar.gz")) (sha256 (base32 - "1nw8r88a5g2d550yvklawlvns8gd5slw53yy688kxnsa65aln79w")))) + "0wnlasg62rm5d39nq1yw4namcx2ivxgzl93r5f2vb9s0yaz5l3x0")))) (native-inputs `(("python-sip" ,python2-sip) ("qt" ,qt-4))) -- cgit v1.2.3 From 89761f0ef151690b12aaf36c04ba9e21e47be198 Mon Sep 17 00:00:00 2001 From: Efraim Flashner Date: Wed, 30 Dec 2020 00:41:57 +0200 Subject: gnu: python2-pyqt: Don't propagate python-sip. * gnu/packages/qt.scm (python2-pyqt)[native-inputs]: Move python2-sip ... [propagated-inputs]: ... to here. --- gnu/packages/qt.scm | 5 +++-- 1 file changed, 3 insertions(+), 2 deletions(-) diff --git a/gnu/packages/qt.scm b/gnu/packages/qt.scm index bc45c94d66..0b94063373 100644 --- a/gnu/packages/qt.scm +++ b/gnu/packages/qt.scm @@ -2237,9 +2237,10 @@ itself.") (base32 "0wnlasg62rm5d39nq1yw4namcx2ivxgzl93r5f2vb9s0yaz5l3x0")))) (native-inputs - `(("python-sip" ,python2-sip) - ("qt" ,qt-4))) + `(("qt" ,qt-4))) (inputs `(("python" ,python-2))) + (propagated-inputs + `(("python-sip" ,python2-sip))) (arguments `(#:tests? #f ; no check target #:modules ((srfi srfi-1) -- cgit v1.2.3 From 4697544a01354bd5dc65656723904ef0af2aba70 Mon Sep 17 00:00:00 2001 From: Leo Famulari Date: Tue, 29 Dec 2020 16:16:05 -0500 Subject: gnu: linux-libre 4.14: Update to 4.14.213. * gnu/packages/linux.scm (linux-libre-4.14-version): Update to 4.14.213. (linux-libre-4.14-pristine-source): Update hash. --- gnu/packages/linux.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/gnu/packages/linux.scm b/gnu/packages/linux.scm index 9fd5a941e4..bfed9c9e30 100644 --- a/gnu/packages/linux.scm +++ b/gnu/packages/linux.scm @@ -394,7 +394,7 @@ corresponding UPSTREAM-SOURCE (an origin), using the given DEBLOB-SCRIPTS." (%upstream-linux-source version hash) deblob-scripts-4.19))) -(define-public linux-libre-4.14-version "4.14.212") +(define-public linux-libre-4.14-version "4.14.213") (define deblob-scripts-4.14 (linux-libre-deblob-scripts linux-libre-4.14-version @@ -402,7 +402,7 @@ corresponding UPSTREAM-SOURCE (an origin), using the given DEBLOB-SCRIPTS." (base32 "1qij18inijj6c3ma8hv98yjagnzxdxyn134da9fd23ky8q6hbvky"))) (define-public linux-libre-4.14-pristine-source (let ((version linux-libre-4.14-version) - (hash (base32 "0y8ck8pfxm8862wi4cz8qp9x9b18yl448i8m7bpbphs290nc66qf"))) + (hash (base32 "079axkl14jp8lz30h21q4gmhmjw6zf5ycmxji65kgcgyg7dwwyzx"))) (make-linux-libre-source version (%upstream-linux-source version hash) deblob-scripts-4.14))) -- cgit v1.2.3 From 3a6276ee06215277e74554c0372065d79f4109b1 Mon Sep 17 00:00:00 2001 From: Leo Famulari Date: Tue, 29 Dec 2020 16:16:33 -0500 Subject: gnu: linux-libre 4.9: Update to 4.9.249. * gnu/packages/linux.scm (linux-libre-4.9-version): Update to 4.9.249. (linux-libre-4.9-pristine-source): Update hash. --- gnu/packages/linux.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/gnu/packages/linux.scm b/gnu/packages/linux.scm index bfed9c9e30..6e8a6a2271 100644 --- a/gnu/packages/linux.scm +++ b/gnu/packages/linux.scm @@ -407,7 +407,7 @@ corresponding UPSTREAM-SOURCE (an origin), using the given DEBLOB-SCRIPTS." (%upstream-linux-source version hash) deblob-scripts-4.14))) -(define-public linux-libre-4.9-version "4.9.248") +(define-public linux-libre-4.9-version "4.9.249") (define deblob-scripts-4.9 (linux-libre-deblob-scripts linux-libre-4.9-version @@ -415,7 +415,7 @@ corresponding UPSTREAM-SOURCE (an origin), using the given DEBLOB-SCRIPTS." (base32 "0fxajshb75siq39lj5h8xvhdj8lcmddkslwlyj65rhlwk6g2r4b2"))) (define-public linux-libre-4.9-pristine-source (let ((version linux-libre-4.9-version) - (hash (base32 "1kzczy0lz3lnjkhvx90dgjmzn3d3y55qxlihiclkr4y9c602d1s6"))) + (hash (base32 "0kjcw0vgga9msgqnipgg028v3rcc5am2d094v3hqkkjvzyb8dwxi"))) (make-linux-libre-source version (%upstream-linux-source version hash) deblob-scripts-4.9))) -- cgit v1.2.3 From 8e128df5bfc66eaf93b61e0eae8af2e61cd630fe Mon Sep 17 00:00:00 2001 From: Leo Famulari Date: Tue, 29 Dec 2020 16:16:58 -0500 Subject: gnu: linux-libre 4.4: Update to 4.4.249. * gnu/packages/linux.scm (linux-libre-4.4-version): Update to 4.4.249. (linux-libre-4.4-pristine-source): Update hash. --- gnu/packages/linux.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/gnu/packages/linux.scm b/gnu/packages/linux.scm index 6e8a6a2271..3f5d1f1502 100644 --- a/gnu/packages/linux.scm +++ b/gnu/packages/linux.scm @@ -420,7 +420,7 @@ corresponding UPSTREAM-SOURCE (an origin), using the given DEBLOB-SCRIPTS." (%upstream-linux-source version hash) deblob-scripts-4.9))) -(define-public linux-libre-4.4-version "4.4.248") +(define-public linux-libre-4.4-version "4.4.249") (define deblob-scripts-4.4 (linux-libre-deblob-scripts linux-libre-4.4-version @@ -428,7 +428,7 @@ corresponding UPSTREAM-SOURCE (an origin), using the given DEBLOB-SCRIPTS." (base32 "0hhin1jpfkd6nwrb6xqxjzl3hdxy4pn8a15hy2d3d83yw6pflbsf"))) (define-public linux-libre-4.4-pristine-source (let ((version linux-libre-4.4-version) - (hash (base32 "1z1xbkm0z0v6k3scszii5hi24pn391332g0li93p3n1rnv74jap5"))) + (hash (base32 "04pb4vgia6zaindf6804gq9jn3mhmy01yijqmpi79sh9rlqzzh1i"))) (make-linux-libre-source version (%upstream-linux-source version hash) deblob-scripts-4.4))) -- cgit v1.2.3 From 5b3ec8c452437da0a05f4bcda6785547f077ffe4 Mon Sep 17 00:00:00 2001 From: Nicolas Goaziou Date: Wed, 30 Dec 2020 02:15:11 +0100 Subject: gnu: emacs-auctex: Update to 13.0.1. * gnu/packages/emacs-xyz.scm (emacs-auctex): Update to 13.0.1. --- gnu/packages/emacs-xyz.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/gnu/packages/emacs-xyz.scm b/gnu/packages/emacs-xyz.scm index cb83dd71e4..eca0701b43 100644 --- a/gnu/packages/emacs-xyz.scm +++ b/gnu/packages/emacs-xyz.scm @@ -2068,14 +2068,14 @@ as a library for other Emacs packages.") (define-public emacs-auctex (package (name "emacs-auctex") - (version "13.0.0") + (version "13.0.1") (source (origin (method url-fetch) (uri (string-append "https://elpa.gnu.org/packages/" "auctex-" version ".tar")) (sha256 - (base32 "10bk4h5d14ainx9jrqahdnbng399wpic6xzv1fkr43yr1l3g4y1v")))) + (base32 "1y5q3phd0xr7342i757hr4hic8nad4kkdf1zk56mlj5snwr0g0w7")))) (build-system emacs-build-system) ;; We use 'emacs' because AUCTeX requires dbus at compile time ;; ('emacs-minimal' does not provide dbus). -- cgit v1.2.3 From 2dc05554803f0c3a359fcad5cc7b7a8405bde416 Mon Sep 17 00:00:00 2001 From: Nicolas Goaziou Date: Wed, 30 Dec 2020 02:15:33 +0100 Subject: gnu: emacs-tramp: Update to 2.5.0. * gnu/packages/emacs-xyz.scm (emacs-tramp): Update to 2.5.0. --- gnu/packages/emacs-xyz.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/gnu/packages/emacs-xyz.scm b/gnu/packages/emacs-xyz.scm index eca0701b43..99df0a72e0 100644 --- a/gnu/packages/emacs-xyz.scm +++ b/gnu/packages/emacs-xyz.scm @@ -22592,14 +22592,14 @@ well as an option for visually flashing evaluated s-expressions.") (define-public emacs-tramp (package (name "emacs-tramp") - (version "2.4.4.4") + (version "2.5.0") (source (origin (method url-fetch) (uri (string-append "https://elpa.gnu.org/packages/" "tramp-" version ".tar")) (sha256 - (base32 "1f2d02xz3kpy50186wcy688lx76dv0gmrbkj2qdvifcwhyc26sz8")))) + (base32 "1jpnqyk108nksaym2b9v243y5zkpr4px9d070wsb9cwm3xrcd8rh")))) (build-system emacs-build-system) (arguments `(#:emacs ,emacs ;need D-Bus -- cgit v1.2.3 From 776c700aafb380ffc72f10cc463c6dfeb35dd7c1 Mon Sep 17 00:00:00 2001 From: Vincent Legoll Date: Tue, 29 Dec 2020 11:35:57 +0100 Subject: gnu: tigervnc-client: Update to 1.11.0. * gnu/packages/vnc.scm (tigervnc-client): Update to 1.11.0. [inputs]: Add pixman. Signed-off-by: Leo Famulari --- gnu/packages/vnc.scm | 86 +++++++++++++++++++++++++++------------------------- 1 file changed, 44 insertions(+), 42 deletions(-) diff --git a/gnu/packages/vnc.scm b/gnu/packages/vnc.scm index ab89bad7aa..b8979b2921 100644 --- a/gnu/packages/vnc.scm +++ b/gnu/packages/vnc.scm @@ -1,8 +1,9 @@ -;;; GNU Guix --- Functional package management for GNU +;; GNU Guix --- Functional package management for GNU ;;; Copyright © 2019 Todor Kondić ;;; Copyright © 2020 Oleg Pykhalov ;;; Copyright © 2020 Hartmut Goebel ;;; Copyright © 2020 Marius Bakke +;;; Copyright © 2020 Vincent Legoll ;;; ;;; This file is part of GNU Guix. ;;; @@ -41,55 +42,56 @@ #:use-module (gnu packages pkg-config) #:use-module (gnu packages sdl) #:use-module (gnu packages tls) + #:use-module (gnu packages xdisorg) #:use-module (gnu packages xorg)) (define-public tigervnc-client - (let ((commit "920d9c4d6562ecabf79497bc901d50522d4bc661")) - (package - (name "tigervnc-client") - (version (git-version "1.10.1" "1" commit)) - (source (origin - (method git-fetch) - (uri - (git-reference - (url "https://github.com/TigerVNC/tigervnc") - (commit commit))) - (sha256 - (base32 - "1lp6mxl5dqlkrzx0q145jzgpbwvhsni3fj6x9ngf8v5s63x82q1p")) - (file-name (git-file-name name version)))) - (build-system cmake-build-system) - (arguments - '(#:tests? #f ; Tests that do exists are not automated. - #:phases (modify-phases %standard-phases - (replace 'install - (lambda* (#:key outputs #:allow-other-keys) - (with-directory-excursion "vncviewer" - (invoke "make" "install"))))))) - (native-inputs - `(("autoconf" ,autoconf) - ("gettext-minimal" ,gettext-minimal) - ("automake" ,automake))) - (inputs - `(("zlib" ,zlib) - ("gnutls" ,gnutls) - ("libjpeg-turbo" ,libjpeg-turbo) - ("fltk" ,fltk) - ("linux-pam" ,linux-pam) - ("libx11" ,libx11) - ("libxext" ,libxext) - ("libxtst" ,libxtst) - ("libxrandr" ,libxrandr) - ("libxdamage" ,libxdamage))) - (home-page "https://tigervnc.org/") - (synopsis "High-performance, platform-neutral + (package + (name "tigervnc-client") + (version "1.11.0") + (source (origin + (method git-fetch) + (uri + (git-reference + (url "https://github.com/TigerVNC/tigervnc") + (commit (string-append "v" version)))) + (sha256 + (base32 + "1bg79ahr4mzy48ak0caxy3ckdsxmhpchypggaz6lxjjk92hgsz91")) + (file-name (git-file-name name version)))) + (build-system cmake-build-system) + (arguments + '(#:tests? #f ; Tests that do exists are not automated. + #:phases (modify-phases %standard-phases + (replace 'install + (lambda* (#:key outputs #:allow-other-keys) + (with-directory-excursion "vncviewer" + (invoke "make" "install"))))))) + (native-inputs + `(("autoconf" ,autoconf) + ("gettext-minimal" ,gettext-minimal) + ("automake" ,automake))) + (inputs + `(("zlib" ,zlib) + ("gnutls" ,gnutls) + ("libjpeg-turbo" ,libjpeg-turbo) + ("fltk" ,fltk) + ("linux-pam" ,linux-pam) + ("libx11" ,libx11) + ("libxext" ,libxext) + ("libxtst" ,libxtst) + ("libxrandr" ,libxrandr) + ("libxdamage" ,libxdamage) + ("pixman" ,pixman))) + (home-page "https://tigervnc.org/") + (synopsis "High-performance, platform-neutral implementation of VNC (client)") - (description "TigerVNC is a client/server implementation of VNC (Virtual + (description "TigerVNC is a client/server implementation of VNC (Virtual Network Computing). It provides enough performance to run even 3D and video applications. It also provides extensions for advanced authentication methods and TLS encryption. This package installs only the VNC client, the application which is needed to connect to VNC servers.") - (license license:gpl2)))) + (license license:gpl2))) ;; A VNC server is, in fact, an X server so it seems like a good idea ;; to build on the work already done for xorg-server package. This is -- cgit v1.2.3 From 0c31e86b8c0429c7e77cf05f46ba519ab4b86b40 Mon Sep 17 00:00:00 2001 From: Vincent Legoll Date: Tue, 29 Dec 2020 11:40:34 +0100 Subject: gnu: timidity++: Update to 2.15.0. * gnu/packages/audio.scm (timidity++): Update to 2.15.0. Signed-off-by: Leo Famulari --- gnu/packages/audio.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/gnu/packages/audio.scm b/gnu/packages/audio.scm index 4ac70d7b24..87c7e6f4de 100644 --- a/gnu/packages/audio.scm +++ b/gnu/packages/audio.scm @@ -3047,7 +3047,7 @@ for loudness normalisation.") (define-public timidity++ (package (name "timidity++") - (version "2.14.0") + (version "2.15.0") (source (origin (method url-fetch) (uri (string-append "mirror://sourceforge/timidity/TiMidity++" @@ -3055,7 +3055,7 @@ for loudness normalisation.") "/TiMidity++-" version ".tar.bz2")) (sha256 (base32 - "0xk41w4qbk23z1fvqdyfblbz10mmxsllw0svxzjw5sa9y11vczzr")))) + "1xf8n6dqzvi6nr2asags12ijbj1lwk1hgl3s27vm2szib8ww07qn")))) (build-system gnu-build-system) (arguments '(#:configure-flags -- cgit v1.2.3 From e87a2dea55a65baff45df5a153f46f5f1e1f9e32 Mon Sep 17 00:00:00 2001 From: Vincent Legoll Date: Tue, 29 Dec 2020 12:46:20 +0100 Subject: gnu: milkytracker: Update to 1.03.00. * gnu/packages/music.scm (milkytracker): Update to 1.03.00. Signed-off-by: Leo Famulari --- gnu/packages/music.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/gnu/packages/music.scm b/gnu/packages/music.scm index 1e6da43cba..ab881845ed 100644 --- a/gnu/packages/music.scm +++ b/gnu/packages/music.scm @@ -3485,7 +3485,7 @@ websites such as Libre.fm.") (define-public milkytracker (package (name "milkytracker") - (version "1.02.00") + (version "1.03.00") (source (origin (method git-fetch) (uri (git-reference @@ -3494,7 +3494,7 @@ websites such as Libre.fm.") (file-name (git-file-name name version)) (sha256 (base32 - "05a6d7l98k9i82dwrgi855dnccm3f2lkb144gi244vhk1156n0ca")) + "025fj34gq2kmkpwcswcyx7wdxb89vm944dh685zi4bxx0hz16vvk")) (modules '((guix build utils))) ;; Remove non-FSDG compliant sample songs. (snippet -- cgit v1.2.3 From 50793bd41af7c1fa787bf1b409dcddbbb5224387 Mon Sep 17 00:00:00 2001 From: Efraim Flashner Date: Wed, 30 Dec 2020 10:11:26 +0200 Subject: gnu: kajongg: Wrap binary with pythonpath. * gnu/packages/games.scm (kajongg)[arguments]: Add phase to wrap binary with PYTHONPATH. [propagated-inputs]: Move python-twisted, python-pyqt ... [inputs]: ... to here. --- gnu/packages/games.scm | 15 +++++++++++---- 1 file changed, 11 insertions(+), 4 deletions(-) diff --git a/gnu/packages/games.scm b/gnu/packages/games.scm index 54ec564768..c94a1e2d54 100644 --- a/gnu/packages/games.scm +++ b/gnu/packages/games.scm @@ -10119,6 +10119,15 @@ This package is part of the KDE games module.") (sha256 (base32 "0ql6p5zifdpdf65r7ki9ml123azpwwk9x3x8r9ij6xhjnf7p7x6w")))) (build-system qt-build-system) + (arguments + `(#:phases + (modify-phases %standard-phases + (add-after 'install 'wrap + (lambda* (#:key outputs #:allow-other-keys) + (let ((out (assoc-ref outputs "out"))) + (wrap-program (string-append out "/bin/kajongg") + `("PYTHONPATH" ":" prefix (,(getenv "PYTHONPATH")))) + #t)))))) (native-inputs `(("extra-cmake-modules" ,extra-cmake-modules) ;("perl" ,perl) @@ -10130,12 +10139,10 @@ This package is part of the KDE games module.") ("ki18n" ,ki18n) ("libkmahjongg" ,libkmahjongg) ("python" ,python) + ("python-twisted" ,python-twisted) + ("python-pyqt" ,python-pyqt) ("qtbase" ,qtbase) ("qtsvg" ,qtsvg))) - (propagated-inputs - `(("python-twisted" ,python-twisted) - ("python-pyqt" ,python-pyqt))) - ;; FIXME: Need to wrap PYTHONPATH (home-page "https://games.kde.org/") (synopsis "Classical Mah Jongg game for 4 players") (description "Kajongg is the ancient Chinese board game for 4 players. -- cgit v1.2.3 From 4cd1fac51ffd3098e606dba78df3186497a5d09c Mon Sep 17 00:00:00 2001 From: Efraim Flashner Date: Wed, 30 Dec 2020 09:59:05 +0200 Subject: gnu: libkmahjongg: Update to 20.12.0. * gnu/packages/games.scm (libkmahjongg): Update to 20.12.0. [source]: Download from new upstream URI. --- gnu/packages/games.scm | 6 +++--- 1 file changed, 3 insertions(+), 3 deletions(-) diff --git a/gnu/packages/games.scm b/gnu/packages/games.scm index c94a1e2d54..57946e6292 100644 --- a/gnu/packages/games.scm +++ b/gnu/packages/games.scm @@ -10000,14 +10000,14 @@ This package is part of the KDE games module.") (define-public libkmahjongg (package (name "libkmahjongg") - (version "19.08.3") + (version "20.12.0") (source (origin (method url-fetch) - (uri (string-append "mirror://kde/stable/applications/" + (uri (string-append "mirror://kde/stable/release-service/" version "/src/libkmahjongg-" version ".tar.xz")) (sha256 - (base32 "0rdimk11hrc8qrmiv26z0ddjzi1k6806c0rfskx4cwmildmh6zgx")))) + (base32 "10ljzbf7qki5flydankrbksaihhkqpfyljb8c71fbwqwmkr7rgfq")))) (build-system qt-build-system) (native-inputs `(("extra-cmake-modules" ,extra-cmake-modules))) -- cgit v1.2.3 From 7daf6bcbfcefa756843a744004c36fb61372f626 Mon Sep 17 00:00:00 2001 From: Efraim Flashner Date: Wed, 30 Dec 2020 09:59:37 +0200 Subject: gnu: kmahjongg: Update to 20.12.0. * gnu/packages/games.scm (kmahjongg): Update to 20.12.0. [source]: Download from new upstream URI. --- gnu/packages/games.scm | 6 +++--- 1 file changed, 3 insertions(+), 3 deletions(-) diff --git a/gnu/packages/games.scm b/gnu/packages/games.scm index 57946e6292..8a48a474e2 100644 --- a/gnu/packages/games.scm +++ b/gnu/packages/games.scm @@ -10031,14 +10031,14 @@ other Mah Jongg like games.") (define-public kmahjongg (package (name "kmahjongg") - (version "19.08.3") + (version "20.12.0") (source (origin (method url-fetch) - (uri (string-append "mirror://kde/stable/applications/" + (uri (string-append "mirror://kde/stable/release-service/" version "/src/kmahjongg-" version ".tar.xz")) (sha256 - (base32 "08na845h0nhmfrszdmvfq5y1dy7kgbrlzjp0f5snvbbf7w44ci6p")))) + (base32 "1fcj4jb2zzbaxp7cp04w36y0c7lh77yzin66fmvrcxkl11xi2wwd")))) (build-system qt-build-system) (native-inputs `(("extra-cmake-modules" ,extra-cmake-modules) -- cgit v1.2.3 From 455f9ec4a0c538d6f4f03500915d7ca74c8bbc00 Mon Sep 17 00:00:00 2001 From: Efraim Flashner Date: Wed, 30 Dec 2020 10:00:06 +0200 Subject: gnu: kshisen: Update to 20.12.0. * gnu/packages/games.scm (kshisen): Update to 20.12.0. [source]: Download from new upstream URI. --- gnu/packages/games.scm | 6 +++--- 1 file changed, 3 insertions(+), 3 deletions(-) diff --git a/gnu/packages/games.scm b/gnu/packages/games.scm index 8a48a474e2..4ef572ce55 100644 --- a/gnu/packages/games.scm +++ b/gnu/packages/games.scm @@ -10071,14 +10071,14 @@ This package is part of the KDE games module.") (define-public kshisen (package (name "kshisen") - (version "19.08.3") + (version "20.12.0") (source (origin (method url-fetch) - (uri (string-append "mirror://kde/stable/applications/" + (uri (string-append "mirror://kde/stable/release-service/" version "/src/kshisen-" version ".tar.xz")) (sha256 - (base32 "1bq5m48af4h5apfp3bfsp76nlpv6h5sc0gd544zv7cgpfznz1sds")))) + (base32 "1hrwr0f1kidivsp8lnwdbqz3xxagjvjwh72r3gma8smfilybygfb")))) (build-system qt-build-system) (native-inputs `(("extra-cmake-modules" ,extra-cmake-modules) -- cgit v1.2.3 From 01497efa84bd12109c37c03ef1d73adc080dddf3 Mon Sep 17 00:00:00 2001 From: Efraim Flashner Date: Wed, 30 Dec 2020 10:00:49 +0200 Subject: gnu: kajongg: Update to 20.12.0. * gnu/packages/games.scm (kajongg): Update to 20.12.0. [source]: Download from new upstream URI. --- gnu/packages/games.scm | 6 +++--- 1 file changed, 3 insertions(+), 3 deletions(-) diff --git a/gnu/packages/games.scm b/gnu/packages/games.scm index 4ef572ce55..5ae5c76b61 100644 --- a/gnu/packages/games.scm +++ b/gnu/packages/games.scm @@ -10110,14 +10110,14 @@ This package is part of the KDE games module.") (define-public kajongg (package (name "kajongg") - (version "19.08.3") + (version "20.12.0") (source (origin (method url-fetch) - (uri (string-append "mirror://kde/stable/applications/" + (uri (string-append "mirror://kde/stable/release-service/" version "/src/kajongg-" version ".tar.xz")) (sha256 - (base32 "0ql6p5zifdpdf65r7ki9ml123azpwwk9x3x8r9ij6xhjnf7p7x6w")))) + (base32 "03fdbnx7zx7vgcxvwd1h1098ks9gq162bwz35fhpyzpynr667m5r")))) (build-system qt-build-system) (arguments `(#:phases -- cgit v1.2.3 From 8ad4c4841db34504d96c6d736eb56f675c26cede Mon Sep 17 00:00:00 2001 From: Efraim Flashner Date: Wed, 30 Dec 2020 10:04:23 +0200 Subject: gnu: kbreakout: Update to 20.12.0. * gnu/packages/games.scm (kbreakout): Update to 20.12.0. [source]: Download from new upstream URI. --- gnu/packages/games.scm | 6 +++--- 1 file changed, 3 insertions(+), 3 deletions(-) diff --git a/gnu/packages/games.scm b/gnu/packages/games.scm index 5ae5c76b61..565227b469 100644 --- a/gnu/packages/games.scm +++ b/gnu/packages/games.scm @@ -10161,14 +10161,14 @@ This package is part of the KDE games module.") (define-public kbreakout (package (name "kbreakout") - (version "19.08.3") + (version "20.12.0") (source (origin (method url-fetch) - (uri (string-append "mirror://kde/stable/applications/" version + (uri (string-append "mirror://kde/stable/release-service/" version "/src/kbreakout-" version ".tar.xz")) (sha256 - (base32 "0gwzx1z9mxrjlcjzglg8cxkyd6900whcar3b5j9laxxarc6xhj8w")))) + (base32 "0kqj2cx0ny3qq65c6w5fpnzmrwl9irg8slzvpd3anck5cnvma3j4")))) (build-system qt-build-system) (native-inputs `(("extra-cmake-modules" ,extra-cmake-modules) -- cgit v1.2.3 From d84222586c4c35a32d2ec7ac595dd20125f29949 Mon Sep 17 00:00:00 2001 From: Efraim Flashner Date: Wed, 30 Dec 2020 10:13:28 +0200 Subject: gnu: kmines: Update to 20.12.0. * gnu/packages/games.scm (kmines): Update to 20.12.0. [source]: Download from new upstream URI. --- gnu/packages/games.scm | 6 +++--- 1 file changed, 3 insertions(+), 3 deletions(-) diff --git a/gnu/packages/games.scm b/gnu/packages/games.scm index 565227b469..743a451e0f 100644 --- a/gnu/packages/games.scm +++ b/gnu/packages/games.scm @@ -10199,14 +10199,14 @@ This package is part of the KDE games module.") (define-public kmines (package (name "kmines") - (version "19.08.3") + (version "20.12.0") (source (origin (method url-fetch) - (uri (string-append "mirror://kde/stable/applications/" version + (uri (string-append "mirror://kde/stable/release-service/" version "/src/kmines-" version ".tar.xz")) (sha256 - (base32 "0ac3za36lh8hpx6mqfic9amwmzhzhzplm9hg3pw12gxl5a9mvfsf")))) + (base32 "0hqjwh3jq2npqwkvh67fyn2xnq8swiasdw5jz8f0ikl0k28id775")))) (build-system qt-build-system) (native-inputs `(("extra-cmake-modules" ,extra-cmake-modules) -- cgit v1.2.3 From 57c6361db658307b71e49cfce61bd8b88afcf110 Mon Sep 17 00:00:00 2001 From: Efraim Flashner Date: Wed, 30 Dec 2020 10:14:44 +0200 Subject: gnu: konquest: Update to 20.12.0. * gnu/packages/games.scm (konquest): Update to 20.12.0. [source]: Download from new upstream URI. --- gnu/packages/games.scm | 6 +++--- 1 file changed, 3 insertions(+), 3 deletions(-) diff --git a/gnu/packages/games.scm b/gnu/packages/games.scm index 743a451e0f..b690b2d2ee 100644 --- a/gnu/packages/games.scm +++ b/gnu/packages/games.scm @@ -10237,14 +10237,14 @@ This package is part of the KDE games module.") (define-public konquest (package (name "konquest") - (version "19.08.3") + (version "20.12.0") (source (origin (method url-fetch) - (uri (string-append "mirror://kde/stable/applications/" + (uri (string-append "mirror://kde/stable/release-service/" version "/src/konquest-" version ".tar.xz")) (sha256 - (base32 "02gjxskhi10a1sqh3skcild8zria7wncz1a4sbz7ax1p851q76k1")))) + (base32 "0lnwj06vv4qx05hr8pzysnvrxh8y04asajrph0rsj37v8hs9g5lh")))) (build-system qt-build-system) (native-inputs `(("extra-cmake-modules" ,extra-cmake-modules) -- cgit v1.2.3 From e9d0f4ad396e0da03b1a67283761db156be3d363 Mon Sep 17 00:00:00 2001 From: Efraim Flashner Date: Wed, 30 Dec 2020 10:15:57 +0200 Subject: gnu: kbounce: Update to 20.12.0. * gnu/packages/games.scm (kbounce): Update to 20.12.0. [source]: Download from new upstream URI. --- gnu/packages/games.scm | 6 +++--- 1 file changed, 3 insertions(+), 3 deletions(-) diff --git a/gnu/packages/games.scm b/gnu/packages/games.scm index b690b2d2ee..53b8d921cb 100644 --- a/gnu/packages/games.scm +++ b/gnu/packages/games.scm @@ -10277,14 +10277,14 @@ This package is part of the KDE games module.") (define-public kbounce (package (name "kbounce") - (version "19.08.3") + (version "20.12.0") (source (origin (method url-fetch) - (uri (string-append "mirror://kde/stable/applications/" + (uri (string-append "mirror://kde/stable/release-service/" version "/src/kbounce-" version ".tar.xz")) (sha256 - (base32 "02rfv0qzz5cmyfx8f56a45hbm9gsp6m3dcy8ajwx88rw5wpbrr11")))) + (base32 "0ymy0z1qlw3n653xs3dsa1xm78q4xaj09dnnci4km77rzis26vb6")))) (build-system qt-build-system) (native-inputs `(("extra-cmake-modules" ,extra-cmake-modules) -- cgit v1.2.3 From 656cc0839893ddb241fc472d945774a9f64f7c2c Mon Sep 17 00:00:00 2001 From: Efraim Flashner Date: Wed, 30 Dec 2020 10:17:51 +0200 Subject: gnu: ksudoku: Update to 20.12.0. * gnu/packages/games.scm (ksudoku): Update to 20.12.0. [source]: Download from new upstream URI. --- gnu/packages/games.scm | 6 +++--- 1 file changed, 3 insertions(+), 3 deletions(-) diff --git a/gnu/packages/games.scm b/gnu/packages/games.scm index 53b8d921cb..7190d3ca93 100644 --- a/gnu/packages/games.scm +++ b/gnu/packages/games.scm @@ -10357,14 +10357,14 @@ This package is part of the KDE games module.") (define-public ksudoku (package (name "ksudoku") - (version "19.08.3") + (version "20.12.0") (source (origin (method url-fetch) - (uri (string-append "mirror://kde/stable/applications/" + (uri (string-append "mirror://kde/stable/release-service/" version "/src/ksudoku-" version ".tar.xz")) (sha256 - (base32 "0rcscz91hilm7l3am5w02n0n8l7xhi4l0n4sskznh68kblw0ggw2")))) + (base32 "0pj6ry7ak1rnpb93mqypaxrcbmrhwg9ir6zhb3ybzfkfcrh67g12")))) (build-system qt-build-system) (native-inputs `(("extra-cmake-modules" ,extra-cmake-modules) -- cgit v1.2.3 From 7341ab7e08e0d62d3c27ca9d543198d91d411f5e Mon Sep 17 00:00:00 2001 From: Efraim Flashner Date: Wed, 30 Dec 2020 10:19:16 +0200 Subject: gnu: kgoldrunner: Update to 20.12.0. * gnu/packages/games.scm (kgoldrunner): Update to 20.12.0. [source]: Download from new upstream URI. --- gnu/packages/games.scm | 8 ++++---- 1 file changed, 4 insertions(+), 4 deletions(-) diff --git a/gnu/packages/games.scm b/gnu/packages/games.scm index 7190d3ca93..750070eb72 100644 --- a/gnu/packages/games.scm +++ b/gnu/packages/games.scm @@ -10462,14 +10462,14 @@ This package is part of the KDE games module.") (define-public kgoldrunner (package (name "kgoldrunner") - (version "19.08.3") + (version "20.12.0") (source (origin (method url-fetch) - (uri (string-append "mirror://kde/stable/applications/" version "/src/kgoldrunner-" - version ".tar.xz")) + (uri (string-append "mirror://kde/stable/release-service/" version + "/src/kgoldrunner-" version ".tar.xz")) (sha256 - (base32 "16rcvq796r3asz4v4ap75xvwnxd3dd2nsq5r9vxvzl6rrf1w9bj4")))) + (base32 "17ra5d3r9ajy2inj17gwd5xphzhvbzx5kpvdwyj6msx4dd9wxgfi")))) (build-system qt-build-system) (native-inputs `(("extra-cmake-modules" ,extra-cmake-modules) -- cgit v1.2.3 From 25557055faf278b91bf51f00865282eee545d672 Mon Sep 17 00:00:00 2001 From: Efraim Flashner Date: Wed, 30 Dec 2020 10:20:27 +0200 Subject: gnu: kblackbox: Update to 20.12.0. * gnu/packages/games.scm (kblackbox): Update to 20.12.0. [source]: Download from new upstream URI. --- gnu/packages/games.scm | 6 +++--- 1 file changed, 3 insertions(+), 3 deletions(-) diff --git a/gnu/packages/games.scm b/gnu/packages/games.scm index 750070eb72..5de35bf598 100644 --- a/gnu/packages/games.scm +++ b/gnu/packages/games.scm @@ -10581,14 +10581,14 @@ This package is part of the KDE games module.") (define-public kblackbox (package (name "kblackbox") - (version "19.08.3") + (version "20.12.0") (source (origin (method url-fetch) - (uri (string-append "mirror://kde/stable/applications/" version + (uri (string-append "mirror://kde/stable/release-service/" version "/src/kblackbox-" version ".tar.xz")) (sha256 - (base32 "1x42sfpf75c6mavwkc7g7dm11y9s5dpj8igphly5kvm0pajqby0n")))) + (base32 "0la5w44b0gl72g3wfp0pw8gwnm287lh7nd9k5ikpszw5nn49db0h")))) (build-system qt-build-system) (native-inputs `(("extra-cmake-modules" ,extra-cmake-modules) -- cgit v1.2.3 From 2ab9e58da36f675b077b165619f961d701130ff7 Mon Sep 17 00:00:00 2001 From: Efraim Flashner Date: Wed, 30 Dec 2020 10:21:32 +0200 Subject: gnu: knetwalk: Update to 20.12.0. * gnu/packages/games.scm (knetwalk): Update to 20.12.0. [source]: Download from new upstream URI. --- gnu/packages/games.scm | 6 +++--- 1 file changed, 3 insertions(+), 3 deletions(-) diff --git a/gnu/packages/games.scm b/gnu/packages/games.scm index 5de35bf598..ae30b6b3d8 100644 --- a/gnu/packages/games.scm +++ b/gnu/packages/games.scm @@ -10622,14 +10622,14 @@ This package is part of the KDE games module.") (define-public knetwalk (package (name "knetwalk") - (version "19.08.3") + (version "20.12.0") (source (origin (method url-fetch) - (uri (string-append "mirror://kde/stable/applications/" version + (uri (string-append "mirror://kde/stable/release-service/" version "/src/knetwalk-" version ".tar.xz")) (sha256 - (base32 "1i340salzgqdw8y33wrrydmpgx3pvwf5wrbljlh67cjf6s4csx7d")))) + (base32 "060kj06vpigdy570izsjfgnmqqrpmb8bkr9arqc109hg3avl5wjz")))) (build-system qt-build-system) (native-inputs `(("extra-cmake-modules" ,extra-cmake-modules) -- cgit v1.2.3 From de8f4bcc458ee5dbe56a50ae02e59163b7e3ded4 Mon Sep 17 00:00:00 2001 From: Efraim Flashner Date: Wed, 30 Dec 2020 10:22:35 +0200 Subject: gnu: bomber: Update to 20.12.0. * gnu/packages/games.scm (bomber): Update to 20.12.0. [source]: Download from new upstream URI. --- gnu/packages/games.scm | 6 +++--- 1 file changed, 3 insertions(+), 3 deletions(-) diff --git a/gnu/packages/games.scm b/gnu/packages/games.scm index ae30b6b3d8..45ecfdb3cc 100644 --- a/gnu/packages/games.scm +++ b/gnu/packages/games.scm @@ -10664,14 +10664,14 @@ This package is part of the KDE games module.") (define-public bomber (package (name "bomber") - (version "19.08.3") + (version "20.12.0") (source (origin (method url-fetch) - (uri (string-append "mirror://kde/stable/applications/" version + (uri (string-append "mirror://kde/stable/release-service/" version "/src/bomber-" version ".tar.xz")) (sha256 - (base32 "1lvzd0mzgq25akvwvkm57l3plm65k731v2i1ahakn985bb5gc3is")))) + (base32 "1fjcwm591jgx3bgqpi0j5fnb2l2r2h3r6lav3vhaxz4rkf56pg2a")))) (build-system qt-build-system) (native-inputs `(("extra-cmake-modules" ,extra-cmake-modules) -- cgit v1.2.3 From 2c876ee0f14a3efda20c75edf64e6dcf12436ea7 Mon Sep 17 00:00:00 2001 From: Efraim Flashner Date: Wed, 30 Dec 2020 10:24:03 +0200 Subject: gnu: granatier: Update to 20.12.0. * gnu/packages/games.scm (granatier): Update to 20.12.0. [source]: Download from new upstream URI. --- gnu/packages/games.scm | 6 +++--- 1 file changed, 3 insertions(+), 3 deletions(-) diff --git a/gnu/packages/games.scm b/gnu/packages/games.scm index 45ecfdb3cc..7f2be50ce6 100644 --- a/gnu/packages/games.scm +++ b/gnu/packages/games.scm @@ -10706,14 +10706,14 @@ This package is part of the KDE games module.") (define-public granatier (package (name "granatier") - (version "19.08.3") + (version "20.12.0") (source (origin (method url-fetch) - (uri (string-append "mirror://kde/stable/applications/" version + (uri (string-append "mirror://kde/stable/release-service/" version "/src/granatier-" version ".tar.xz")) (sha256 - (base32 "141qmdinz7ikbbrs8dq6cap3nl22sl7pw62r80pf3xxwn2q4phpa")))) + (base32 "1fyh7zyacb3pnlfd29jw2jmyl8a7sjw354pi234nd5x5999xw5z6")))) (build-system qt-build-system) (native-inputs `(("extra-cmake-modules" ,extra-cmake-modules) -- cgit v1.2.3 From ee32e0f1207d5d600455a1571dbb4316818c924e Mon Sep 17 00:00:00 2001 From: Efraim Flashner Date: Wed, 30 Dec 2020 10:26:01 +0200 Subject: gnu: ksirk: Update to 20.12.0. * gnu/packages/games.scm (ksirk): Update to 20.12.0. [source]: Download from new upstream URI. --- gnu/packages/games.scm | 6 +++--- 1 file changed, 3 insertions(+), 3 deletions(-) diff --git a/gnu/packages/games.scm b/gnu/packages/games.scm index 7f2be50ce6..b7bee0a47b 100644 --- a/gnu/packages/games.scm +++ b/gnu/packages/games.scm @@ -10744,14 +10744,14 @@ This package is part of the KDE games module.") (define-public ksirk (package (name "ksirk") - (version "19.08.3") + (version "20.12.0") (source (origin (method url-fetch) - (uri (string-append "mirror://kde/stable/applications/" version + (uri (string-append "mirror://kde/stable/release-service/" version "/src/ksirk-" version ".tar.xz")) (sha256 - (base32 "1b1wixs2hp5qnvdygfwa3kvy0kn94ysa4ifmx90q6r3yfr2lpfca")))) + (base32 "10y7nm0x6zcc0gh3am69bbxyyb8azbbfyrdqsa023ggr7n04cn21")))) (build-system qt-build-system) (native-inputs `(("extra-cmake-modules" ,extra-cmake-modules) -- cgit v1.2.3 From 4c10278e56dc2f807cc52ce479275be57aeb9f02 Mon Sep 17 00:00:00 2001 From: Efraim Flashner Date: Wed, 30 Dec 2020 10:27:10 +0200 Subject: gnu: kiriki: Update to 20.12.0. * gnu/packages/games.scm (kiriki): Update to 20.12.0. [source]: Download from new upstream URI. --- gnu/packages/games.scm | 6 +++--- 1 file changed, 3 insertions(+), 3 deletions(-) diff --git a/gnu/packages/games.scm b/gnu/packages/games.scm index b7bee0a47b..6a70837d0c 100644 --- a/gnu/packages/games.scm +++ b/gnu/packages/games.scm @@ -10848,14 +10848,14 @@ This package is part of the KDE games module.") (define-public kiriki (package (name "kiriki") - (version "19.08.3") + (version "20.12.0") (source (origin (method url-fetch) - (uri (string-append "mirror://kde/stable/applications/" version + (uri (string-append "mirror://kde/stable/release-service/" version "/src/kiriki-" version ".tar.xz")) (sha256 - (base32 "1xg25dj95g81dc5l7k47am4j52abrwwfx4h73lvsbn4lc8lfmshw")))) + (base32 "0milc8fl1rj4yrwdvm60ampd47dyiys1xvqi5f0g7y6mgymgyk4x")))) (build-system qt-build-system) (native-inputs `(("extra-cmake-modules" ,extra-cmake-modules) -- cgit v1.2.3 From 8e36d0c407f11280918215255c02f2ae816019b7 Mon Sep 17 00:00:00 2001 From: Efraim Flashner Date: Wed, 30 Dec 2020 10:28:22 +0200 Subject: gnu: kubrick: Update to 20.12.0. * gnu/packages/games.scm (kubrick): Update to 20.12.0. [source]: Download from new upstream URI. --- gnu/packages/games.scm | 6 +++--- 1 file changed, 3 insertions(+), 3 deletions(-) diff --git a/gnu/packages/games.scm b/gnu/packages/games.scm index 6a70837d0c..29dafaf552 100644 --- a/gnu/packages/games.scm +++ b/gnu/packages/games.scm @@ -10934,14 +10934,14 @@ This package is part of the KDE games module.") (define-public kubrick (package (name "kubrick") - (version "19.08.3") + (version "20.12.0") (source (origin (method url-fetch) - (uri (string-append "mirror://kde/stable/applications/" version + (uri (string-append "mirror://kde/stable/release-service/" version "/src/kubrick-" version ".tar.xz")) (sha256 - (base32 "0ma8wja4rqlsmsr8cyicfpkwlgqva4450ls4c0ql53p0kabf04gx")))) + (base32 "0h3mypwd67sss08j5vvrih5f5ss85m9kax6412y40xmsm51lz2pq")))) (build-system qt-build-system) (native-inputs `(("extra-cmake-modules" ,extra-cmake-modules) -- cgit v1.2.3 From 8fd37c7a2237723d3d097eee150d6f03416f477e Mon Sep 17 00:00:00 2001 From: Efraim Flashner Date: Wed, 30 Dec 2020 10:29:39 +0200 Subject: gnu: kapman: Update to 20.12.0. * gnu/packages/games.scm (kapman): Update to 20.12.0. [source]: Download from new upstream URI. --- gnu/packages/games.scm | 6 +++--- 1 file changed, 3 insertions(+), 3 deletions(-) diff --git a/gnu/packages/games.scm b/gnu/packages/games.scm index 29dafaf552..65c69836fe 100644 --- a/gnu/packages/games.scm +++ b/gnu/packages/games.scm @@ -11015,14 +11015,14 @@ This package is part of the KDE games module.") (define-public kapman (package (name "kapman") - (version "19.08.3") + (version "20.12.0") (source (origin (method url-fetch) - (uri (string-append "mirror://kde/stable/applications/" version + (uri (string-append "mirror://kde/stable/release-service/" version "/src/kapman-" version ".tar.xz")) (sha256 - (base32 "03pq38caam30q4bw14c045kayw2d87xq1yaa3s2jkrylylfq3p0f")))) + (base32 "14x3v6li4r3gzzwfd6ar9saq2rhc7yxs0sp9ygalzq8vq4d7i1kh")))) (build-system qt-build-system) (native-inputs `(("extra-cmake-modules" ,extra-cmake-modules) -- cgit v1.2.3 From 2129bf0c60edb7e0610691472bdb0633dd6040da Mon Sep 17 00:00:00 2001 From: Efraim Flashner Date: Wed, 30 Dec 2020 10:30:47 +0200 Subject: gnu: kspaceduel: Update to 20.12.0. * gnu/packages/games.scm (kspaceduel): Update to 20.12.0. [source]: Download from new upstream URI. --- gnu/packages/games.scm | 6 +++--- 1 file changed, 3 insertions(+), 3 deletions(-) diff --git a/gnu/packages/games.scm b/gnu/packages/games.scm index 65c69836fe..2e32e56025 100644 --- a/gnu/packages/games.scm +++ b/gnu/packages/games.scm @@ -11055,14 +11055,14 @@ This package is part of the KDE games module.") (define-public kspaceduel (package (name "kspaceduel") - (version "19.08.3") + (version "20.12.0") (source (origin (method url-fetch) - (uri (string-append "mirror://kde/stable/applications/" version + (uri (string-append "mirror://kde/stable/release-service/" version "/src/kspaceduel-" version ".tar.xz")) (sha256 - (base32 "1hppni0ihs7psc0dly5rxyy2a38nzhlig9yfyhi3lkh36z05pql8")))) + (base32 "1aixh6ygif2cm1a5g32sl5y6b5x68139pzihaxq4334c6avamdai")))) (build-system qt-build-system) (native-inputs `(("extra-cmake-modules" ,extra-cmake-modules) -- cgit v1.2.3 From 491a6e48678ad9005dac84ce6631e85a1beb3c04 Mon Sep 17 00:00:00 2001 From: Efraim Flashner Date: Wed, 30 Dec 2020 10:32:01 +0200 Subject: gnu: bovo: Update to 20.12.0. * gnu/packages/games.scm (bovo): Update to 20.12.0. [source]: Download from new upstream URI. --- gnu/packages/games.scm | 6 +++--- 1 file changed, 3 insertions(+), 3 deletions(-) diff --git a/gnu/packages/games.scm b/gnu/packages/games.scm index 2e32e56025..9c4c095201 100644 --- a/gnu/packages/games.scm +++ b/gnu/packages/games.scm @@ -11091,14 +11091,14 @@ This package is part of the KDE games module.") (define-public bovo (package (name "bovo") - (version "19.08.3") + (version "20.12.0") (source (origin (method url-fetch) - (uri (string-append "mirror://kde/stable/applications/" version + (uri (string-append "mirror://kde/stable/release-service/" version "/src/bovo-" version ".tar.xz")) (sha256 - (base32 "0dbpng0w52nahmx7brsll66zw23ql1g6pcvn2k4g2lnvxch0i59g")))) + (base32 "18qbac366m0xma3ary11q9zxz0wgnysppcl7kpypl6ic3nf61wqz")))) (build-system qt-build-system) (native-inputs `(("extra-cmake-modules" ,extra-cmake-modules) -- cgit v1.2.3 From 6dfd1fbd4d1c3bc72c73fe26513f02c3499f819e Mon Sep 17 00:00:00 2001 From: Efraim Flashner Date: Wed, 30 Dec 2020 10:33:06 +0200 Subject: gnu: killbots: Update to 20.12.0. * gnu/packages/games.scm (killbots): Update to 20.12.0. [source]: Download from new upstream URI. --- gnu/packages/games.scm | 6 +++--- 1 file changed, 3 insertions(+), 3 deletions(-) diff --git a/gnu/packages/games.scm b/gnu/packages/games.scm index 9c4c095201..1b97a976ba 100644 --- a/gnu/packages/games.scm +++ b/gnu/packages/games.scm @@ -11128,14 +11128,14 @@ This package is part of the KDE games module.") (define-public killbots (package (name "killbots") - (version "19.08.3") + (version "20.12.0") (source (origin (method url-fetch) - (uri (string-append "mirror://kde/stable/applications/" version + (uri (string-append "mirror://kde/stable/release-service/" version "/src/killbots-" version ".tar.xz")) (sha256 - (base32 "1qi86q7diw7glkp9v33yim9nhz2da4balbxa1hjrdgjdv8zdbxbm")))) + (base32 "1296gww42nwnai7y6m2qpjqpyc30p7z9chfv5rv0n48jvdhva88y")))) (build-system qt-build-system) (native-inputs `(("extra-cmake-modules" ,extra-cmake-modules) -- cgit v1.2.3 From ebae645bb884b77dfb16e26ff86f985050c9a3e9 Mon Sep 17 00:00:00 2001 From: Efraim Flashner Date: Wed, 30 Dec 2020 10:34:30 +0200 Subject: gnu: knavalbattle: Update to 20.12.0. * gnu/packages/games.scm (knavalbattle): Update to 20.12.0. [source]: Download from new upstream URI. --- gnu/packages/games.scm | 8 ++++---- 1 file changed, 4 insertions(+), 4 deletions(-) diff --git a/gnu/packages/games.scm b/gnu/packages/games.scm index 1b97a976ba..e457ae5d5c 100644 --- a/gnu/packages/games.scm +++ b/gnu/packages/games.scm @@ -11247,14 +11247,14 @@ This package is part of the KDE games module.") (define-public knavalbattle (package (name "knavalbattle") - (version "19.08.3") + (version "20.12.0") (source (origin (method url-fetch) - (uri (string-append "mirror://kde/stable/applications/" version -"/src/knavalbattle-" version ".tar.xz")) + (uri (string-append "mirror://kde/stable/release-service/" version + "/src/knavalbattle-" version ".tar.xz")) (sha256 - (base32 "0sdfjplqkb30x2mvh66pkzay6vn5px87779sh2s8lpl6fcw0v9g4")))) + (base32 "03rqf4avn61b0v340ymmzgp7s0axygjgxq1nlp5aaqbx70zcb4lq")))) (build-system qt-build-system) (native-inputs `(("extra-cmake-modules" ,extra-cmake-modules) -- cgit v1.2.3 From c7397009924699ae4674ab9f25b13ebecb99affe Mon Sep 17 00:00:00 2001 From: Efraim Flashner Date: Wed, 30 Dec 2020 10:36:38 +0200 Subject: gnu: kreversi: Update to 20.08.3. * gnu/packages/games.scm (kreversi): Update to 20.08.3. [source]: Download from new upstream URI. --- gnu/packages/games.scm | 8 ++++---- 1 file changed, 4 insertions(+), 4 deletions(-) diff --git a/gnu/packages/games.scm b/gnu/packages/games.scm index e457ae5d5c..dd07d703eb 100644 --- a/gnu/packages/games.scm +++ b/gnu/packages/games.scm @@ -11288,14 +11288,14 @@ This package is part of the KDE games module.") (define-public kreversi (package (name "kreversi") - (version "19.08.3") + (version "20.08.3") (source (origin (method url-fetch) - (uri (string-append "mirror://kde/stable/applications/" version -"/src/kreversi-" version ".tar.xz")) + (uri (string-append "mirror://kde/stable/release-service/" version + "/src/kreversi-" version ".tar.xz")) (sha256 - (base32 "0b6q8df2bawgnrswhq59z37axad0q3zpvvzxdds7sz1lw505xw9h")))) + (base32 "0d3y072q61xcik9lf0pz0c9njvarwlvf6hqv5fp5jyqaf2902pmi")))) (build-system qt-build-system) (native-inputs `(("extra-cmake-modules" ,extra-cmake-modules) -- cgit v1.2.3 From 189cd35a2a4260ebfaef5ff1bfc3921661e556f8 Mon Sep 17 00:00:00 2001 From: Efraim Flashner Date: Wed, 30 Dec 2020 10:37:53 +0200 Subject: gnu: ksquares: Update to 20.12.0. * gnu/packages/games.scm (ksquares): Update to 20.12.0. [source]: Download from new upstream URI. --- gnu/packages/games.scm | 6 +++--- 1 file changed, 3 insertions(+), 3 deletions(-) diff --git a/gnu/packages/games.scm b/gnu/packages/games.scm index dd07d703eb..4db8ebe64b 100644 --- a/gnu/packages/games.scm +++ b/gnu/packages/games.scm @@ -11331,14 +11331,14 @@ This package is part of the KDE games module.") (define-public ksquares (package (name "ksquares") - (version "19.08.3") + (version "20.12.0") (source (origin (method url-fetch) - (uri (string-append "mirror://kde/stable/applications/" version + (uri (string-append "mirror://kde/stable/release-service/" version "/src/ksquares-" version ".tar.xz")) (sha256 - (base32 "0hv8hls5s627lys08nnw72rfzsafj3dmp49mh2afzmh6lgk9h5vy")))) + (base32 "0chd30byl2kww1k699vkygrxq2wdyvi84m2bimk23q96fl8h831y")))) (build-system qt-build-system) (native-inputs `(("extra-cmake-modules" ,extra-cmake-modules) -- cgit v1.2.3 From 4303e33c8636d9c3bfe03758f25636efa9674af9 Mon Sep 17 00:00:00 2001 From: Efraim Flashner Date: Wed, 30 Dec 2020 10:39:03 +0200 Subject: gnu: kjumpingcube: Update to 20.12.0. * gnu/packages/games.scm (kjumpingcube): Update to 20.12.0. [source]: Download from new upstream URI. --- gnu/packages/games.scm | 6 +++--- 1 file changed, 3 insertions(+), 3 deletions(-) diff --git a/gnu/packages/games.scm b/gnu/packages/games.scm index 4db8ebe64b..d1a076e091 100644 --- a/gnu/packages/games.scm +++ b/gnu/packages/games.scm @@ -11368,14 +11368,14 @@ This package is part of the KDE games module.") (define-public kjumpingcube (package (name "kjumpingcube") - (version "19.08.3") + (version "20.12.0") (source (origin (method url-fetch) - (uri (string-append "mirror://kde/stable/applications/" version + (uri (string-append "mirror://kde/stable/release-service/" version "/src/kjumpingcube-" version ".tar.xz")) (sha256 - (base32 "0d67zqkf2xffjkj671gl2n6nj6jajyn6rgqqj5i6gm500mqi9rm1")))) + (base32 "1mk73il4jh15z5pm3fp65hsyvmrga11c3h7w96yamy2n2bbniapq")))) (build-system qt-build-system) (native-inputs `(("extra-cmake-modules" ,extra-cmake-modules) -- cgit v1.2.3