From bee797fa930e9357dcdf878526e75363f81ac4e7 Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Tue, 4 May 2021 15:37:04 +0200 Subject: gnu: Add r-guitar. * gnu/packages/bioconductor.scm (r-guitar): New variable. --- gnu/packages/bioconductor.scm | 32 ++++++++++++++++++++++++++++++++ 1 file changed, 32 insertions(+) diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index 9b49c6ec43..599704bd9f 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -11168,6 +11168,38 @@ export to genome browser viewable files, and functions for enrichment analyses.") (license license:artistic2.0))) +(define-public r-guitar + (package + (name "r-guitar") + (version "2.6.0") + (source + (origin + (method url-fetch) + (uri (bioconductor-uri "Guitar" version)) + (sha256 + (base32 + "0lvfrpgrvmrz4f4qmsii70hw10h72zh1g1alv2sf6a6ixhndm0mz")))) + (properties `((upstream-name . "Guitar"))) + (build-system r-build-system) + (propagated-inputs + `(("r-annotationdbi" ,r-annotationdbi) + ("r-dplyr" ,r-dplyr) + ("r-genomicfeatures" ,r-genomicfeatures) + ("r-genomicranges" ,r-genomicranges) + ("r-ggplot2" ,r-ggplot2) + ("r-knitr" ,r-knitr) + ("r-magrittr" ,r-magrittr) + ("r-rtracklayer" ,r-rtracklayer))) + (native-inputs + `(("r-knitr" ,r-knitr))) + (home-page "https://bioconductor.org/packages/Guitar") + (synopsis "Visualize genomic features") + (description + "This package is designed for visualization of RNA-related genomic +features with respect to the landmarks of RNA transcripts, i.e., transcription +starting site, start codon, stop codon and transcription ending site.") + (license license:gpl2))) + (define-public r-sushi (package (name "r-sushi") -- cgit v1.2.3