From aef2425666b47f5b9df24db2e0193e582d0782a5 Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?M=C4=83d=C4=83lin=20Ionel=20Patra=C8=99cu?= Date: Wed, 22 Jun 2022 15:57:41 +0200 Subject: gnu: Add r-aseb. * gnu/packages/bioconductor.scm (r-aseb): New variable. --- gnu/packages/bioconductor.scm | 27 +++++++++++++++++++++++++++ 1 file changed, 27 insertions(+) diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index 2ace372c58..b8535250f9 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -2317,6 +2317,33 @@ reproducible gene expression signatures capable of accurately distinguishing tumor samples from healthy controls.") (license license:artistic2.0))) +(define-public r-aseb + (package + (name "r-aseb") + (version "1.40.0") + (source (origin + (method url-fetch) + (uri (bioconductor-uri "ASEB" version)) + (sha256 + (base32 + "1i0r4vimk6is4j4rr14ajp8papznpmmr0bhwd96s8w53cqdqph7p")))) + (properties `((upstream-name . "ASEB"))) + (build-system r-build-system) + (home-page "https://bioconductor.org/packages/ASEB") + (synopsis "Predict acetylated lysine sites") + (description + "ASEB is an R package to predict lysine sites that can be acetylated by a +specific @dfn{KAT} (K-acetyl-transferases) family. Lysine acetylation is a +well-studied posttranslational modification on kinds of proteins. About four +thousand lysine acetylation sites and over 20 lysine KATs have been +identified. However, which KAT is responsible for a given protein or lysine +site acetylation is mostly unknown. In this package, we use a +@dfn{GSEA}-like (Gene Set Enrichment Analysis) method to make predictions. +GSEA method was developed and successfully used to detect coordinated +expression changes and find the putative functions of the long non-coding +RNAs.") + (license license:gpl3+))) + (define-public r-asgsca (package (name "r-asgsca") -- cgit v1.2.3