From 8c42f8f6e82d9e503921f86ce66a816be24f91cf Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Fri, 10 May 2019 12:44:09 +0200 Subject: gnu: Add r-iclusterplus. * gnu/packages/bioconductor.scm (r-iclusterplus): New variable. --- gnu/packages/bioconductor.scm | 30 ++++++++++++++++++++++++++++++ 1 file changed, 30 insertions(+) diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index d3fbc4ccde..ab9f3e94cf 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -4339,3 +4339,33 @@ (define-public r-biocfilecache custom Txdb objects) that are costly or difficult to create, web resources, and data files used across sessions.") (license license:artistic2.0))) + +(define-public r-iclusterplus + (package + (name "r-iclusterplus") + (version "1.20.0") + (source + (origin + (method url-fetch) + (uri (bioconductor-uri "iClusterPlus" version)) + (sha256 + (base32 + "14x43jjhbp4zwb4dv9rwrm5l5p7h76bc1zkdbiikqip9bzph0viq")))) + (properties `((upstream-name . "iClusterPlus"))) + (build-system r-build-system) + (native-inputs `(("gfortran" ,gfortran))) + (home-page "https://bioconductor.org/packages/iClusterPlus/") + (synopsis "Integrative clustering of multi-type genomic data") + (description + "iClusterPlus is developed for integrative clustering analysis of +multi-type genomic data and is an enhanced version of iCluster proposed and +developed by Shen, Olshen and Ladanyi (2009). Multi-type genomic data arise +from the experiments where biological samples (e.g. tumor samples) are +analyzed by multiple techniques, for instance, @dfn{array comparative genomic +hybridization} (aCGH), gene expression microarray, RNA-seq and DNA-seq, and so +on. In the iClusterPlus model, binary observations such as somatic mutation +are modeled as Binomial processes; categorical observations such as copy +number states are realizations of Multinomial random variables; counts are +modeled as Poisson random processes; and continuous measures are modeled by +Gaussian distributions.") + (license license:gpl2+))) -- cgit v1.2.3