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* gnu: Remove r-biocinstaller.Tobias Geerinckx-Rice2019-07-08
| | | | | | | It requires R < 3.6 and is no longer supported. * gnu/packages/bioinformatics.scm (r-biocinstaller): Define as deprecated in favour of r-biocmanager.
* gnu: r-xbioc: Update to 0.1.16-1.6ff0670.Tobias Geerinckx-Rice2019-07-08
| | | | | | | | | This is needed to deprecate r-biocinstaller, which is no longer distributed. * gnu/packages/bioinformatics.scm (r-xbioc): Update to 0.1.16-1.6ff0670. [propagated-inputs]: Replace deprecated r-biocinstaller with r-biocmanager.
* gnu: cmh: Fix build.Tobias Geerinckx-Rice2019-07-08
| | | | | | | This follows up on commit 1de48e8f8afec23847458c533d2fae0d69d8942a. * gnu/packages/algebra.scm (fplll-4-cmh): New variable. (cmh)[inputs]: Use it.
* gnu: libomp: Download over HTTPS.Tobias Geerinckx-Rice2019-07-08
| | | | * gnu/packages/llvm.scm (libomp)[source]: Use HTTPS.
* gnu: libomp: Fix source hash.Tobias Geerinckx-Rice2019-07-08
| | | | | | | This is a follow-up to commit c5296e205b65a9b53553cf45be2ab223d5e82df5, which updated llvm. * gnu/packages/llvm.scm (libomp)[source]: Fix hash.
* gnu: r-txdb-mmusculus-ucsc-mm10-knowngene: Update to 3.4.7.Tobias Geerinckx-Rice2019-07-08
| | | | | * gnu/packages/bioconductor.scm (r-txdb-mmusculus-ucsc-mm10-knowngene): Update to 3.4.7.
* gnu: Add emacs-polymode-org.Joseph LaFreniere2019-07-08
| | | | | | * gnu/packages/emacs-xyz.scm (emacs-polymode-org): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* gnu: emacs-polymode: Update to 0.2.Joseph LaFreniere2019-07-08
| | | | | | | | | * gnu/packages/emacs-xyz.scm (emacs-polymode): Update to 0.2. [source]: Change URL of Git repository to Polymode GitHub project. [homepage]: Change URL to polymode GitHub project. [description]: Realign text. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* gnu: i3blocks: Update to ec050e7.ison2019-07-08
| | | | | | * gnu/packages/wm.scm (i3blocks): Update to ec050e7. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* gnu: dosfstools: Enable compat symlinks.Pierre Langlois2019-07-08
| | | | | | | | | Enable compatibility symlinks to provide commands such as `mkfs.vfat`. * gnu/packages/disk.scm (dosfstools)[arguments]: Pass "--enable-compat-symlinks" to configure. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* gnu: wireservice: New wireservice-package macro.Pierre Langlois2019-07-08
| | | | | | | | | | | | Replace the parent 'base-package' variable with a 'wireservice-package' macro that includes all common package fields. * gnu/packages/wireservice.scm (base-package): Delete. (wireservice-package): New macro. (python-leather, python-agate, python-agate-sql, python-agate-dbf, python-agate-excel): Use wireservice-package. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* gnu: gama: Update to 2.06.Efraim Flashner2019-07-08
| | | | * gnu/packages/gps.scm (gama): Update to 2.06.
* gnu: diffoscope: Update to 116.Vagrant Cascadian2019-07-07
| | | | * gnu/packages/package-management (diffoscope): Update to 116.
* gnu: Add csvkit.Pierre Langlois2019-07-07
| | | | | | | | * gnu/packages/wireservice.scm (csvkit): New variable. * gnu/packages/patches/csvkit-fix-tests.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* gnu: Add python-agate-excel.Pierre Langlois2019-07-07
| | | | | | * gnu/packages/wireservice.scm (python-agate-excel): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* gnu: Add python-agate-dbf.Pierre Langlois2019-07-07
| | | | | | * gnu/packages/wireservice.scm (python-agate-dbf): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* gnu: Add python-agate-sql.Pierre Langlois2019-07-07
| | | | | | * gnu/packages/wireservice.scm (python-agate-sql): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* gnu: Add python-agate.Pierre Langlois2019-07-07
| | | | | | * gnu/packages/wireservice.scm (python-agate): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* gnu: Add python-leather.Pierre Langlois2019-07-07
| | | | | | | * gnu/packages/wireservice.scm: New file. * gnu/local.mk (GNU_SYSTEM_MODULES): Add it. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* gnu: Add python-dbfread.Pierre Langlois2019-07-07
| | | | | | * gnu/packages/python-xyz.scm (python-dbfread): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* gnu: Add python-crate.Pierre Langlois2019-07-07
| | | | | | * gnu/packages/databases.scm (python-crate): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* gnu: Add python-pytimeparse.Pierre Langlois2019-07-07
| | | | | | * gnu/packages/time.scm (python-pytimeparse): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* gnu: Add python-slugify.Pierre Langlois2019-07-07
| | | | | | | | * gnu/packages/python-web.scm (python-slugify): New variable. * gnu/packages/patches/python-slugify-depend-on-unidecode.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* gnu: Add emacs-moe-theme-el.Brian Leung2019-07-07
| | | | | | * gnu/packages/emacs-xyz.scm (emacs-moe-theme-el): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* gnu: emacs-goto-chg: Update to 1.7.3-1.1829a13.Brian Leung2019-07-07
| | | | | | | | | * gnu/packages/emacs-xyz.scm (emacs-goto-chg): Update to 1.7.3-1.1829a13. [origin]: Use GIT-FETCH and GIT-REFERENCE. [home-page]: Update. [inputs]: Add emacs-undo-tree. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* gnu: emacs-hydra: Update to 0.15.0.Brian Leung2019-07-07
| | | | | | * gnu/packages/emacs-xyz.scm (emacs-hydra): Update to 0.15.0. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* gnu: Add emacs-lpy.Brian Leung2019-07-07
| | | | | | * gnu/packages/emacs-xyz.scm (emacs-lpy): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* gnu: emacs-md4rd: Update to 0.3.1.Brian Leung2019-07-07
| | | | | | * gnu/packages/emacs-xyz.scm (emacs-md4rd): Update to 0.3.1. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* gnu: emacs-zoutline: Update to 0.2.0.Brian Leung2019-07-07
| | | | | | * gnu/packages/emacs-xyz.scm (emacs-zoutline): Update to 0.2.0. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* gnu: emacs-restclient: Update to 0-2.422ee8d.Brian Leung2019-07-07
| | | | | | * gnu/packages/emacs-xyz.scm (emacs-restclient): Update to 0-2.422ee8d. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* gnu: emacs-disk-usage: Don't use unstable tarball.Brian Leung2019-07-07
| | | | | | | * gnu/packages/emacs-xyz.scm (emacs-disk-usage)[source]: Use GIT-FETCH and GIT-FILE-NAME. [home-page] Move to usual location. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* gnu: emacs-fish-completion: Don't use unstable tarball.Brian Leung2019-07-07
| | | | | | | * gnu/packages/emacs-xyz.scm (emacs-fish-completion)[source]: Use GIT-FETCH and GIT-FILE-NAME. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* gnu: emacs-company-restclient: Update to 0.3.0.Brian Leung2019-07-07
| | | | | | * gnu/packages/emacs-xyz.scm (emacs-company-restclient): Update to 0.3.0. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* gnu: emacs-skewer-mode: Update to 1.8.0.Brian Leung2019-07-07
| | | | | | * gnu/packages/emacs-xyz.scm (emacs-skewer-mode): Update to 1.8.0. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* gnu: emacs-simple-httpd: Update to 1.5.1.Brian Leung2019-07-07
| | | | | | * gnu/packages/emacs-xyz.scm (emacs-simple-httpd): Update to 1.5.1. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* gnu: emacs-git-timemachine: Update to 4.10.Brian Leung2019-07-07
| | | | | | | | * gnu/packages/emacs-xyz.scm (emacs-git-timemachine): Update to 4.10. [propagated-inputs] Add emacs-transient. [source] Use GIT-FETCH and GIT-REFERENCE. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* gnu: wine-staging: Update to 4.12.1.Rutger Helling2019-07-07
| | | | | * gnu/packages/wine.scm (wine-staging-patchset-data): Update to 4.12.1. * gnu/packages/wine.scm (wine-staging): Update to 4.12.1.
* gnu: Update lollypop to 1.1.3.1.Christopher Baines2019-07-07
| | | | | * gnu/packages/gnome.scm (lollypop): Update to 1.1.3.1. [inputs]: Add python-pil.
* gnu: xpad: Build against gtksourceview@3.Marius Bakke2019-07-06
| | | | * gnu/packages/gnome.scm (xpad)[inputs]: Change GTKSOURCEVIEW to GTKSOURCEVIEW-3.
* gnu: jsoncpp: Update to 1.9.0.Marius Bakke2019-07-06
| | | | * gnu/packages/serialization.scm (jsoncpp): Update to 1.9.0.
* gnu: jsoncpp: Fetch sources through git.Marius Bakke2019-07-06
| | | | * gnu/packages/serialization.scm (jsoncpp)[source]: Switch to GIT-FETCH.
* gnu: libraw: Update to 0.19.3.Marius Bakke2019-07-06
| | | | * gnu/packages/photo.scm (libraw): Update to 0.19.3.
* gnu: python-soupsieve: Update to 1.9.2.Marius Bakke2019-07-06
| | | | * gnu/packages/python-xyz.scm (python-soupsieve): Update to 1.9.2.
* gnu: python-setuptools: Update to 41.0.1.Brian Leung2019-07-06
| | | | | | * gnu/packages/python-xyz.scm (python-setuptools): Update to 41.0.1. Signed-off-by: Marius Bakke <mbakke@fastmail.com>
* gnu: python-olefile: Update to 0.46.Marius Bakke2019-07-06
| | | | | * gnu/packages/python-xyz.scm (python-olefile): Update to 0.46. [source]: Switch to release tarball instead of git snapshot.
* tests: encrypted-root-os: Increase root partition size.Ludovic Courtès2019-07-06
| | | | | | | 1.2G had become slightly too small on x86_64. * gnu/tests/install.scm (%encrypted-root-installation-script): Increase root partition size to 1.3G.
* ci: 'channel-build-system' honors the target system.Ludovic Courtès2019-07-06
| | | | | | | | | | | | | | | | | | | | | Fixes a bug made evident e79281be105b16153c375af5506db31fd1e32698: the x86_64-linux derivation of 'current-guix' would be cached and reused for i686-linux, leading to test failures. Namely, /run/current-system/profile/bin/guix would have an x86_64 binary in its shebang, and thus it would end up being interpreted by /bin/sh, which would fail like this: + guix --version /run/current-system/profile/bin/guix: line 2: !#: command not found /run/current-system/profile/bin/guix: line 3: syntax error near unexpected token `set!' /run/current-system/profile/bin/guix: line 3: `(begin (set! %load-path … See <https://ci.guix.gnu.org/build/1431119/details>. * gnu/ci.scm (channel-build-system)[build]: Pass #:system to 'run-with-store'.
* gnu: wine-staging: Update to 4.12.Rutger Helling2019-07-06
| | | | | * gnu/packages/wine.scm (wine-staging-patchset-data): Update to 4.12. * gnu/packages/wine.scm (wine-staging): Update to 4.12.
* linux-container: Mount a new /dev/pts instance in the container.Ludovic Courtès2019-07-06
| | | | | | | | | Fixes <https://bugs.gnu.org/36463>. Reported by Steffen Rytter Postas <nc@scalehost.eu>. * gnu/build/linux-container.scm (mount-file-systems): When /dev/ptmx exists on the host, explicitly mount a new instance of devpts and make /dev/ptmx a symlink to /dev/pts/ptmx.
* gnu: grammalecte: Update to 1.2.Nicolas Goaziou2019-07-06
| | | | * gnu/packages/dictionaries.scm (grammalecte): Update to 1.2.
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