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* gnu: python-cleanlab: Disable test_aux_inputs, enable other tests.Ricardo Wurmus2024-01-16
| | | | | | | | | | * gnu/packages/machine-learning.scm (python-cleanlab)[arguments]: Remove 'disable-bad-tests phase and ignore test files in #:test-flags instead; disable test_aux_inputs test, but re-enable tests from test_multilabel_classification.py. [native-inputs]: Add python-pytest-lazy-fixture. Change-Id: I77a16768ff61215e918c98bccd3efa216fb30d7f
* gnu: python-scanpy: Update to 1.9.6.Ricardo Wurmus2024-01-16
| | | | | | | | | * gnu/packages/bioinformatics.scm (python-scanpy): Update to 1.9.6. [arguments]: Update test flags. [native-inputs]: Add python-hatchling, python-hatch-vcs, and python-pytest-nunit. Change-Id: I6d4dcd267a076c5697ed103650841f520dc9917f
* gnu: Add python-pytest-nunit.Ricardo Wurmus2024-01-16
| | | | | | * gnu/packages/check.scm (python-pytest-nunit): New variable. Change-Id: Ic67c973460f09b15bf683f70040a3f5e4381108d
* gnu: python-seaborn: Update to 0.13.1.Ricardo Wurmus2024-01-16
| | | | | | | | | | * gnu/packages/python-xyz.scm (python-seaborn): Update to 0.13.1. [propagated-inputs]: Add python-ipykernel, python-mypy, python-nbconvert, python-numpydoc, python-pyyaml, and python-statsmodels. [native-inputs]: Add python-flake8, python-pre-commit, python-pytest-cov, and python-pytest-xdist; remove python-pypa-build. Change-Id: Id1ed6cfaf7e0950e99c06900fd68fb1ab884bee0
* gnu: python-matplotlib: Update to 3.8.2.Ricardo Wurmus2024-01-16
| | | | | | | | | | | | * gnu/packages/python-xyz.scm (python-matplotlib): Update to 3.8.2. [build-system]: Use pyproject-build-system. [arguments]: Enable more tests; simplify custom 'check phase. [propagated-inputs]: Remove gobject-introspection, python-cairocffi, python-certifi, python-pygobject, python-pytz, python-six, and python-wxpython; add python-contourpy and python-importlib-resources. [native-inputs]: Add pybind11. Change-Id: Ie34826882fdcc20fac3b09130bcd0f4ad4f76b07
* gnu: Add python-contourpy.Ricardo Wurmus2024-01-16
| | | | | | * gnu/packages/python-xyz.scm (python-contourpy): New variable. Change-Id: Icbbe4a358242095fae36639c5c039c029eea4ee3
* gnu: python-kiwisolver: Update to 1.4.5.Ricardo Wurmus2024-01-16
| | | | | | | | | * gnu/packages/maths.scm (python-kiwisolver): Update to 1.4.5. [build-system]: Use pyproject-build-system. [propagated-inputs]: Add python-typing-extension. [native-inputs]: Add python-cppy, python-pytest, and python-setuptools-scm. Change-Id: Iea75440dc58fa342dcf4a2a381b6dcc17e71e618
* gnu: Add python-cppy.Ricardo Wurmus2024-01-16
| | | | | | * gnu/packages/python-xyz.scm (python-cppy): New variable. Change-Id: I584fcddc3430960098d65f1916278a7473249a87
* gnu: python-umap-learn: Update to 0.5.5.Ricardo Wurmus2024-01-16
| | | | | | | | * gnu/packages/machine-learning.scm (python-umap-learn): Update to 0.5.5. [build-system]: Use pyproject-build-system. [arguments]: Remove 'numpy-compatibility and custom 'check phases. Change-Id: I2123f66519730d43e454d9536e8cb7b6c4569d56
* gnu: python-pynndescent: Update to 0.5.11.Ricardo Wurmus2024-01-16
| | | | | | | | | * gnu/packages/machine-learning.scm (python-pynndescent): Update to 0.5.11. [build-system]: Use pyproject-build-system. [arguments]: Remove. [propagated-inputs]: Add python-importlib-metadata. Change-Id: I14f15ea98157ed15b360971c30fe00c5f00af4a7
* gnu: python-scikit-learn: Update to 1.3.2.Ricardo Wurmus2024-01-16
| | | | | | | | | * gnu/packages/machine-learning.scm (python-scikit-learn): Update to 1.3.2. [build-system]: Use pyproject-build-system. [arguments]: Move test flags to #:test-flags. [native-inputs]: Replace python-cython with python-cython-0.29.35. Change-Id: Iac6107dae752c42d9f57448a66eed0526974d57e
* gnu: python-matplotx: Disable test_png test.Ricardo Wurmus2024-01-16
| | | | | | | * gnu/packages/python-xyz.scm (python-matplotx)[arguments]: Disable test_png test. Change-Id: I19a954786d828a1b717c9c4021ad7f5c6172366c
* gnu: python-pypng: Update to 0.20220715.0.Ricardo Wurmus2024-01-16
| | | | | | | | | * gnu/packages/python-xyz.scm (python-pypng): Update to 0.20220715.0. [build-system]: Use pyproject-build-system. [arguments]: Add 'pre-check phase. [native-inputs]: Add python-pytest. Change-Id: Ic47c653f94a688048383eba216f01d7987625680
* gnu: python-scikit-image: Update to 0.22.0.Ricardo Wurmus2024-01-16
| | | | | | | | | | | | | * gnu/packages/python-science.scm (python-scikit-image): Update to 0.22.0. [source]: Fetch from git repository. [build-system]: Use pyproject-build-system. [arguments]: Use G-expression; remove custom 'build phase; simplify 'check phase; enable all tests. [propagated-inputs]: Add python-lazy-loader. [native-inputs]: Add meson-python, python-numpydoc, python-packaging, and python-wheel. Change-Id: I00ede026a7941eae36157106f753a21fb64099c3
* gnu: python-imageio: Update to 2.33.1.Ricardo Wurmus2024-01-16
| | | | | | | | | * gnu/packages/python-xyz.scm (python-imageio): Update to 2.33.1. [propagated-inputs]: Remove python-psutil; add python-tifffile. [native-inputs]: Add python-black, python-flake8, python-fsspec, and python-pytest-cov. Change-Id: I5c64d939f5ee94ac9ec8fdbd7b51cd978b7df0fb
* gnu: python-lazy-loader: Update to 0.3.Ricardo Wurmus2024-01-16
| | | | | | | * gnu/packages/python-xyz.scm (python-lazy-loader): Update to 0.3. [native-inputs]: Add python-pre-commit. Change-Id: Id4f8b61e6e60dd6da04beb8c1e4d064dc34d994c
* gnu: python-tifffile: Update to 2023.12.9.Ricardo Wurmus2024-01-16
| | | | | | | | * gnu/packages/python-xyz.scm (python-tifffile): Update to 2023.12.9. [propagated-inputs]: Remove python-imagecodecs. [native-inputs]: Add python-pytest. Change-Id: I2567bef390e286ed4399cc67b80a9df503f53c0a
* gnu: python-scipy: Update to 1.11.4.Ricardo Wurmus2024-01-16
| | | | | | | | | | * gnu/packages/python-science.scm (python-scipy): Update to 1.11.4. [arguments]: Use mesonpy backend. [inputs]: Replace pybind11 with pybind11-2.10. [native-inputs]: Add python-click, python-doit, python-pooch, and python-pydevtool; replace python-cython with python-cython-0.29.35. Change-Id: I4b26e1b6382899bba24f84461f154e97765e08f5
* gnu: meson-python: Update to 0.15.0.Ricardo Wurmus2024-01-16
| | | | | | | | | | * gnu/packages/build-tools.scm (meson-python): Update to 0.15.0. [arguments]: Add phase 'delete-directory. [propagated-inputs]: Add python-cython, python-pyproject-metadata-0.7, and python-typing-extensions. [native-inputs]: Add python-pytest-cov. Change-Id: I412af929c9e0485aa2a15e316d247f58e6f3477b
* gnu: Add python-pydevtool.Ricardo Wurmus2024-01-16
| | | | | | * gnu/packages/python-xyz.scm (python-pydevtool): New variable. Change-Id: I325b81fa6421094a5a64084c06e66b8fa136e270
* gnu: Add python-pyproject-metadata-0.7.Ricardo Wurmus2024-01-16
| | | | | | * gnu/packages/python-xyz.scm (python-pyproject-metadata-0.7): New variable. Change-Id: I7c47c911fa2a33c0b5711b0009f31b3e32c1c1d7
* gnu: python-doit: Update to 0.36.0.Ricardo Wurmus2024-01-16
| | | | | | | | | | * gnu/packages/python-xyz.scm (python-doit): Update to 0.36.0. [build-system]: Use pyproject-build-system. [arguments]: Disable test_execute test. [propagated-inputs]: Remove python-pyinotify; add python-importlib-metadata. [description]: Add missing spaces between two sentences. Change-Id: I1d046201c9bef63477f8fb0a2f8494bffbbbc711
* gnu: Add pybind11-2.10.Ricardo Wurmus2024-01-16
| | | | | | * gnu/packages/python-xyz.scm (pybind11-2.10): New variable. Change-Id: Ia7915af3baca36b0677d3f762046585abc473f56
* gnu: Add python-cython-0.29.35.Ricardo Wurmus2024-01-16
| | | | | | * gnu/packages/python-xyz.scm (python-cython-0.29.35): New variable. Change-Id: I09ec851a2051e885f6417524bbeeb81b743bef0b
* gnu: Add python-pydoc-markdown.Ricardo Wurmus2024-01-16
| | | | | | * gnu/packages/python-xyz.scm (python-pydoc-markdown): New variable. Change-Id: I03e45c2b87f626f7a8113d785c72c14a301d79be
* gnu: python-yapf: Update to 0.32.0.Ricardo Wurmus2024-01-16
| | | | | | | | | | * gnu/packages/python-xyz.scm (python-yapf): Update to 0.32.0. [build-system]: Use pyproject-build-system. [native-inputs]: Add python-pytest. [propagated-inputs]: Add python-importlib-metadata, python-platformdirs, and python-tomli. Change-Id: I30fa0b9d643f6585624da87d5c1a1edbb59425c4
* gnu: Add python-docspec-python.Ricardo Wurmus2024-01-16
| | | | | | * gnu/packages/python-xyz.scm (python-docspec-python): New variable. Change-Id: Ic607d0a34a8601dd464251edd8c8509314b7489c
* gnu: Add python-nr-util.Ricardo Wurmus2024-01-16
| | | | | | * gnu/packages/python-xyz.scm (python-nr-util): New variable. Change-Id: I26dda5e5bc03334fb476e3f1fd2fa6aaf93a91c3
* gnu: go-github-com-arceliar-ironwood: Update to ↵Artyom V. Poptsov2024-01-15
| | | | | | | | | | v0.0.0-20231127131626-465b82dfb5bd. * gnu/packages/golang.scm (go-github-com-arceliar-ironwood): Update to v0.0.0-20231127131626-465b82dfb5bd. Change-Id: Ia94d7c88e54d33f7bb7b5054a757d7ef203d47c2 Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
* gnu: yggdrasil: Update to 0.5.4.Artyom V. Poptsov2024-01-15
| | | | | | | * gnu/packages/networking.scm (yggdrasil): Update to 0.5.4. Change-Id: I4f386e1b69627b0c5a6095c42274b8a8bff8bfd9 Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
* gnu: hypercorn: Reformat with guix style.Troy Figiel2024-01-15
| | | | * gnu/packages/python-web.scm (hypercorn): Reformat with guix style.
* gnu: hypercorn: Adjust inputs.Troy Figiel2024-01-15
| | | | | | | * gnu/packages/python-web.scm (hypercorn)[propagated-inputs]: Add python-exceptiongroup and python-tomli. Remove python-toml and python-typing-extensions. [native-inputs]: Remove python-mock.
* gnu: Remove python-tslearn.Ricardo Wurmus2024-01-15
| | | | | | | | This package now lives in the guix-science channel. * gnu/packages/machine-learning.scm (python-tslearn): Remove variable. Change-Id: I655df3417d258cb1231746626817fde9628e9569
* gnu: Add python-docspec.Ricardo Wurmus2024-01-15
| | | | | | * gnu/packages/python-xyz.scm (python-docspec): New variable. Change-Id: I3103bde3483273a335156b38de742f493fd366f1
* gnu: Add python-databind-json.Ricardo Wurmus2024-01-15
| | | | | | * gnu/packages/python-xyz.scm (python-databind-json): New variable. Change-Id: Iaab64e28ba6772c14704ff67cffab21a2f555460
* gnu: Add python-databind-core.Ricardo Wurmus2024-01-15
| | | | | | * gnu/packages/python-xyz.scm (python-databind-core): New variable. Change-Id: I45bf0ec5ef123ea20c50e2ca3caf930bfba45eea
* gnu: Add python-typeapi.Ricardo Wurmus2024-01-15
| | | | | | * gnu/packages/python-xyz.scm (python-typeapi): New variable. Change-Id: Id89f3152bcd593d677c4fcb7c98d586cd50e820b
* gnu: Add python-nr-stream.Ricardo Wurmus2024-01-15
| | | | | | * gnu/packages/python-xyz.scm (python-nr-stream): New variable. Change-Id: I59489156e4675a64a31b1cb7f62b7c845c005ce8
* gnu: Add python-nr-date.Ricardo Wurmus2024-01-15
| | | | | | * gnu/packages/python-xyz.scm (python-nr-date): New variable. Change-Id: I4251aef073df29ccada70f1398bce38cfb8962ba
* gnu: Add python-namex.Ricardo Wurmus2024-01-15
| | | | | | * gnu/packages/python-xyz.scm (python-namex): New variable. Change-Id: I02d4ed5e426f0b432c27086aa90628ae54759ca2
* gnu: python-requests-kerberos: Enable tests.Troy Figiel2024-01-15
| | | | | | | | | | | * gnu/packages/python-web.scm (python-requests-kerberos): Enable tests. [source]: Replace the PyPI release by the Github release. [build-system]: Swap to pyproject-build-system. [native-inputs]: Add python-pytest and python-pytest-mock. Co-authored-by: Sharlatan Hellseher <sharlatanus@gmail.com> Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com> Change-Id: Iea750cf722293c4054a6c6e43787806f8f2fd5e2
* gnu: python-requests-kerberos: Fix build.Troy Figiel2024-01-15
| | | | | | | | | * gnu/packages/python-web.scm (python-requests-kerberos)[propagated-inputs]: Add python-gssapi. Co-authored-by: Sharlatan Hellseher <sharlatanus@gmail.com> Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com> Change-Id: I65d1fac0339a119e7a4912d5db150b4adb7586ad
* gnu: python-pyspnego: Propagate python-krb5.Sharlatan Hellseher2024-01-15
| | | | | | | * gnu/packages/python-xyz.scm (python-pyspnego)[propagated-inputs]: Add python-krb5. Change-Id: I2c8ccbd66394cb90ea047f7327d05ecbfe2ec22d
* gnu: Add python-krb5.Troy Figiel2024-01-15
| | | | | | * gnu/packages/python-xyz.scm (python-krb5): New variable. Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
* gnu: Remove python-activepapers.Sharlatan Hellseher2024-01-15
| | | | | | | | | | | <https://issues.guix.gnu.org/68425> This package fails to build and has been not maintained since 2017. * gnu/packages/python-xyz.scm (python-activepapers): Remove variable. Reported-by: Troy Figiel <troy@troyfigiel.com> Change-Id: Id1e968cd4e06919a80ad05e5c8d3fb207426fdde
* gnu: hpcguix-web: Add explicit dependency on Guile-GnuTLS.Ludovic Courtès2024-01-15
| | | | | | | | | | | This is necessary in hpcguix-web 0.4.1 to connect to https://disarchive.guix.gnu.org. * gnu/packages/web.scm (hpcguix-web)[arguments]: In ‘wrap-program’ phase, add guile-gnutls to the wrapper’s search path. [inputs]: Add GUILE-GNUTLS. Change-Id: Ic4d6f65adeb763a404fc24c7e1c87fd7d26550c7
* gnu: fish-foreign-env: Update to 0.20230823.Tanguy Le Carrour2024-01-14
| | | | | | | | * gnu/packages/shells.scm (fish-foreign-env): Update to 0.20230823. [arguments]: Do no substitute in file that no longer exists. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Change-Id: I04138c1d3e8c174b2197e5ca60aaca4caa5453cc
* gnu: cuirass: Update to 7bcd3d0.Ludovic Courtès2024-01-14
| | | | | | * gnu/packages/ci.scm (cuirass): Update to 7bcd3d0. Change-Id: Iefc460df509a2c006f3a49d6050ef08940ed2850
* gnu: openssh: Fix build on ppc64le.Jack Hill2024-01-14
| | | | | | | | | | | | | * gnu/packages/ssh.scm (openssh)[source]: Use 'openssh-gcc-13-ppc64le-fzero-call-used-regs.patch'. * gnu/packages/patches/openssh-gcc-13-ppc64le-fzero-call-used-regs.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. Reported-by: Marcel van der Boom <marcel@van-der-boom.nl>. Change-Id: I41b1350b2cdd1487a8fd69b13b64f63c0dc166c9 Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* gnu: guile-ssh: Update to 0.16.4.Artyom V. Poptsov2024-01-14
| | | | | | | | * gnu/packages/ssh.scm (guile-ssh): Update to 0.16.4. [arguments]: Improve the style. Change-Id: Ib7d741e7f4fc7a1fc167cfa4f7953f84d9f4d390 Signed-off-by: Ludovic Courtès <ludo@gnu.org>
generated by cgit v1.2.3 (git 2.45.0) at 2024-12-14 20:32:44 +0000