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* Merge branch 'master' into python-build-systemHartmut Goebel2016-11-29
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| * gnu: Add r-rocr.Ricardo Wurmus2016-11-28
| | | | | | | | * gnu/packages/statistics.scm (r-rocr): New variable.
| * gnu: Add r-gplots.Ricardo Wurmus2016-11-28
| | | | | | | | * gnu/packages/statistics.scm (r-gplots): New variable.
| * gnu: Add r-gdata.Ricardo Wurmus2016-11-28
| | | | | | | | * gnu/packages/statistics.scm (r-gdata): New variable.
| * gnu: Add r-gtools.Ricardo Wurmus2016-11-28
| | | | | | | | * gnu/packages/statistics.scm (r-gtools): New variable.
| * gnu: Add r-sfsmisc.Ricardo Wurmus2016-11-28
| | | | | | | | * gnu/packages/statistics.scm (r-sfsmisc): New variable.
| * gnu: Add r-fastcluster.Ricardo Wurmus2016-11-28
| | | | | | | | * gnu/packages/statistics.scm (r-fastcluster): New variable.
| * gnu: Add r-preprocesscore.Ricardo Wurmus2016-11-28
| | | | | | | | * gnu/packages/statistics.scm (r-preprocesscore): New variable.
| * gnu: Add r-dynamictreecut.Ricardo Wurmus2016-11-28
| | | | | | | | * gnu/packages/statistics.scm (r-dynamictreecut): New variable.
| * gnu: Add r-spams.Ricardo Wurmus2016-11-28
| | | | | | | | * gnu/packages/statistics.scm (r-spams): New variable.
| * gnu: Add r-googlesheets.Ricardo Wurmus2016-11-28
| | | | | | | | * gnu/packages/statistics.scm (r-googlesheets): New variable.
| * gnu: Add r-cellranger.Ricardo Wurmus2016-11-28
| | | | | | | | * gnu/packages/statistics.scm (r-cellranger): New variable.
| * gnu: Add r-rematch.Ricardo Wurmus2016-11-28
| | | | | | | | * gnu/packages/statistics.scm (r-rematch): New variable.
* | gnu: python-statsmodels: Fix buildHartmut Goebel2016-11-15
| | | | | | | | | | * gnu/packages/statistics.scm (python-statsmodels): [check] set PYTHONPATH prior to running tests.
* | gnu: Remove work-arounds for bug 20765 (ensure uncompressed eggs).Hartmut Goebel2016-11-15
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Bug 20765 is solved since we build all Python packages using option "--single-version-externally-managed". * gnu/packages/bioinformatics.scm (pbtranscript-tofu): Remove configure-flags. (pepr): remove phase "disable-egg-generation". * gnu/packages/pdf.scm (reportlab): Remove configure-flags. * gnu/packages/python.scm (python-sphinx-rtd-theme, python2-elib.intl, python-pkgconfig, python-pytest-pep8, python-pytest-flakes): Remove configure-flags. (python-pillow) remove phase "disable-egg-generation". (python-libarchive-c) Remove patching setup.cfg. * gnu/packages/statistics.scm (python-patsy): remove phase "prevent-generation-of-egg-archive". * gnu/packages/tls.scm (python-acme): remove phase "disable-egg-compression". * gnu/packages/tor.scm (onionshare): Remove configure-flags.
* | gnu: Remove python-setuptools and python2-setuptools from inputs (part 4a)Hartmut Goebel2016-11-15
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | This patch contains the changes for all modules beside python.scm where setuptools are used in an inherited package and removing this input also removes the need for inheriting the package. This is the case if adding setuptools in the inherited package was the only change. Change this to not inherit and remove the new needless call to "strip-python2-variant (if applicable). * gnu/packages/bioinformatics.scm (python-biopython, python2-biopython, python-twobitreader, python2-twobitreader, python-plastid, python2-plastid, python2-pybigwig, python2-screed, sra-tools): No longer "inherit" Python 2 packages inheriting from a Python 3 package if the sole reason for inheriting was adding python-setuptools respective python2-setuptools to [inputs], [native-inputs] or [propagated-inputs]. Remove now needless [properties] "python2-variant" where applicable. * gnu/packages/django.scm (python-pytest-django, python2-pytest-django, python-django-filter, python2-django-filter): Likewise. * gnu/packages/gnupg.scm (python2-pygpgme): Likewise. * gnu/packages/mail.scm (python-mailmanclient, python2-mailmanclient): Likewise. * gnu/packages/mpd.scm (python-msp, python2-mpd2): Likewise. * gnu/packages/music.scm (python-pylast, python2-pylast): Likewise. * gnu/packages/openstack.scm (python-requests-mock, python2-requests-mock, python2-git-review): Likewise. * gnu/packages/password-utils.scm (python2-bcrypt): Likewise. * gnu/packages/protobuf.scm (python-protobuf, python2-protobuf): Likewise. * gnu/packages/statistics.scm (python-patsy, python2-patsy): Likewise. * gnu/packages/web.scm (python2-feedparser): Likewise.
* | gnu: Remove python-setuptools and python2-setuptools from inputs (part 3)Hartmut Goebel2016-11-15
|/ | | | | | | | | | | | | | | | | | | | | | | | | | This patch contains the changes where setuptools are used in an inherited package and removing this input keeps the need for inheriting the package. * gnu/packages/bioinformatics.scm (python2-biom-format): Remove python-setuptools respective python2-setuptools from [inputs], [native-inputs] and [propagated-inputs] in Python 2 packages inheriting from a Python 3 package. * gnu/packages/python.scm (python2-pytest-mock, python2-oauthlib, python2-seaborn, python2-tornado, python2-terminado, python2-rauth, python2-anyjson, python2-amqp, python2-kombu, python2-billiard, python2-celery, python2-jellyfish, python2-binaryornot, python2-natsort, python2-graphene): Likewise. * gnu/packages/statistics.scm (python2-statsmodels): Likewise.
* Merge branch 'core-updates'Ludovic Courtès2016-11-13
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| * Merge branch 'master' into core-updatesMark H Weaver2016-11-07
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| * \ Merge branch 'master' into core-updatesMark H Weaver2016-11-06
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| * \ \ Merge branch 'master' into core-updatesMark H Weaver2016-10-27
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| * \ \ \ Merge branch 'master' into core-updatesLeo Famulari2016-10-26
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| * \ \ \ \ Merge branch 'master' into core-updatesMark H Weaver2016-10-12
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| * \ \ \ \ \ Merge branch 'master' into core-updatesLeo Famulari2016-10-03
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| * \ \ \ \ \ \ Merge branch 'master' into core-updatesLudovic Courtès2016-09-30
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| * | | | | | | | gnu: Add and use gettext-minimal.Alex Kost2016-09-28
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * gnu/packages/gettext.scm (gnu-gettext): Rename to... (gettext-minimal): ... this. Adjust synopsis and description. (gnu-gettext): Inherit from it. (po4a): Use 'gettext-minimal' instead of 'gnu-gettext'. * gnu/packages/acl.scm: Likewise. * gnu/packages/admin.scm: Likewise. * gnu/packages/apl.scm: Likewise. * gnu/packages/attr.scm: Likewise. * gnu/packages/audio.scm: Likewise. * gnu/packages/base.scm: Likewise. * gnu/packages/cdrom.scm: Likewise. * gnu/packages/commencement.scm: Likewise. * gnu/packages/crypto.scm: Likewise. * gnu/packages/databases.scm: Likewise. * gnu/packages/disk.scm: Likewise. * gnu/packages/documentation.scm: Likewise. * gnu/packages/education.scm: Likewise. * gnu/packages/engineering.scm: Likewise. * gnu/packages/enlightenment.scm: Likewise. * gnu/packages/fcitx.scm: Likewise. * gnu/packages/fontutils.scm: Likewise. * gnu/packages/freedesktop.scm: Likewise. * gnu/packages/games.scm: Likewise. * gnu/packages/gkrellm.scm: Likewise. * gnu/packages/glib.scm: Likewise. * gnu/packages/gnome.scm: Likewise. * gnu/packages/grub.scm: Likewise. * gnu/packages/gtk.scm: Likewise. * gnu/packages/guile.scm: Likewise. * gnu/packages/ibus.scm: Likewise. * gnu/packages/irc.scm: Likewise. * gnu/packages/iso-codes.scm: Likewise. * gnu/packages/kde-frameworks.scm: Likewise. * gnu/packages/kodi.scm: Likewise. * gnu/packages/linux.scm: Likewise. * gnu/packages/man.scm: Likewise. * gnu/packages/maths.scm: Likewise. * gnu/packages/mono.scm: Likewise. * gnu/packages/mp3.scm: Likewise. * gnu/packages/music.scm: Likewise. * gnu/packages/nano.scm: Likewise. * gnu/packages/networking.scm: Likewise. * gnu/packages/package-management.scm: Likewise. * gnu/packages/pdf.scm: Likewise. * gnu/packages/sawfish.scm: Likewise. * gnu/packages/statistics.scm: Likewise. * gnu/packages/terminals.scm: Likewise. * gnu/packages/version-control.scm: Likewise. * gnu/packages/vpn.scm: Likewise. * gnu/packages/w3m.scm: Likewise. * gnu/packages/webkit.scm: Likewise. * gnu/packages/wicd.scm: Likewise. * gnu/packages/wine.scm: Likewise. * gnu/packages/xdisorg.scm: Likewise. * gnu/packages/xorg.scm: Likewise.
| * | | | | | | | gnu: r: Update to 3.3.1.Ben J Woodcroft2016-09-09
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * gnu/packages/statistics.scm (r): Update to 3.3.1.
| * | | | | | | | gnu: r: Add openblas input.Ben J Woodcroft2016-09-09
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * gnu/packages/statistics.scm (r)[inputs]: Add openblas. [arguments]: Adapt configure flags.
* | | | | | | | | gnu: r-rmarkdown: Remove phase "copy-files-without-mode".Ricardo Wurmus2016-11-10
| |_|_|_|_|_|_|/ |/| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | This phase is no longer needed as upstream has merged the fix in the current release. * gnu/packages/statistics.scm (r-rmarkdown)[arguments]: Remove build phase "copy-files-without-mode".
* | | | | | | | gnu: r-proto: Update project's home-page.ng02016-11-06
| |_|_|_|_|_|/ |/| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * gnu/packages/statistics.scm (r-proto)[home-page]: Update project's home-page. Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
* | | | | | | gnu: r-nmf: Use bigmemory.Roel Janssen2016-11-04
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * gnu/packages/statistics.scm (r-nmf)[propagated-inputs]: Add r-bigmemory and r-synchronicity.
* | | | | | | gnu: Add r-bigmemory.Roel Janssen2016-11-04
| | | | | | | | | | | | | | | | | | | | | | | | | | | | * gnu/packages/statistics.scm (r-bigmemory): New variable.
* | | | | | | gnu: Add r-synchronicity.Roel Janssen2016-11-04
| | | | | | | | | | | | | | | | | | | | | | | | | | | | * gnu/packages/statistics.scm (r-synchronicity): New variable.
* | | | | | | gnu: Add r-bigmemory-sri.Roel Janssen2016-11-04
| | | | | | | | | | | | | | | | | | | | | | | | | | | | gnu/packages/statistics.scm (r-bigmemory-sri): New variable.
* | | | | | | gnu: r-hmisc: Update to 4.0.0.Ricardo Wurmus2016-11-03
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * gnu/packages/statistics.scm (r-hmisc): Update to 4.0.0. [propagated-inputs]: Add r-htmltable, r-htmltools, r-viridis, r-survival.
* | | | | | | gnu: r-r-oo: Update to 1.21.0.Ricardo Wurmus2016-11-03
| | | | | | | | | | | | | | | | | | | | | | | | | | | | * gnu/packages/statistics.scm (r-r-oo): Update to 1.21.0.
* | | | | | | gnu: r-openssl: Update to 0.9.5.Ricardo Wurmus2016-11-03
| | | | | | | | | | | | | | | | | | | | | | | | | | | | * gnu/packages/statistics.scm (r-openssl): Update to 0.9.5.
* | | | | | | gnu: r-checkmate: Update to 1.8.2.Ricardo Wurmus2016-11-03
| | | | | | | | | | | | | | | | | | | | | | | | | | | | * gnu/packages/statistics.scm (r-checkmate): Update to 1.8.2.
* | | | | | | gnu: r-acepack: Update to 1.4.1.Ricardo Wurmus2016-11-03
| | | | | | | | | | | | | | | | | | | | | | | | | | | | * gnu/packages/statistics.scm (r-acepack): Update to 1.4.1.
* | | | | | | gnu: r-gdtools: Update to 0.1.1.Ricardo Wurmus2016-11-03
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * gnu/packages/statistics.scm (r-gdtools): Update to 0.1.1. [propagated-inputs]: Add r-withr.
* | | | | | | gnu: r-proto: Update to 1.0.0.Ricardo Wurmus2016-11-03
| | | | | | | | | | | | | | | | | | | | | | | | | | | | * gnu/packages/statistics.scm (r-proto): Update to 1.0.0.
* | | | | | | gnu: Add r-survival.Ricardo Wurmus2016-11-03
| |_|_|_|_|/ |/| | | | | | | | | | | | | | | | | * gnu/packages/statistics.scm (r-survival): New variable.
* | | | | | gnu: r: Use uname from GuixRoel Janssen2016-10-27
| |_|_|_|/ |/| | | | | | | | | | | | | | * gnu/packages/statistics.scm (r): Use uname from Guix.
* | | | | gnu: r: Update to 3.3.1.Ricardo Wurmus2016-10-26
| | | | | | | | | | | | | | | | | | | | * gnu/packages/statistics.scm (r): Update to 3.3.1.
* | | | | gnu: r-matrixstats: Update to 0.51.0.Ricardo Wurmus2016-10-26
| | | | | | | | | | | | | | | | | | | | * gnu/packages/statistics.scm (r-matrixstats): Update to 0.51.0.
* | | | | gnu: r-r-utils: Update to 2.4.0.Ricardo Wurmus2016-10-26
| | | | | | | | | | | | | | | | | | | | * gnu/packages/statistics.scm (r-r-utils): Update to 2.4.0.
* | | | | gnu: r-irlba: Update to 2.1.2.Ricardo Wurmus2016-10-26
| | | | | | | | | | | | | | | | | | | | * gnu/packages/statistics.scm (r-irlba): Update to 2.1.2.
* | | | | gnu: r-codetools: Update to 0.2-15.Ricardo Wurmus2016-10-26
| | | | | | | | | | | | | | | | | | | | * gnu/packages/statistics.scm (r-codetools): Update to 0.2-15.
* | | | | gnu: r-snow: Update to 0.4-2.Ricardo Wurmus2016-10-26
| | | | | | | | | | | | | | | | | | | | * gnu/packages/statistics.scm (r-snow): Update to 0.4-2.
* | | | | gnu: r-backports: Update to 1.0.4.Ricardo Wurmus2016-10-26
| | | | | | | | | | | | | | | | | | | | * gnu/packages/statistics.scm (r-backports): Update to 1.0.4.
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