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* gnu: Move content of openssl module into tls module.Andreas Enge2015-07-05
| | | | | | | | | | | | | | * gnu/packages/openssl.scm (openssl, perl-net-ssleay): Move to... * gnu/packages/tls.scm: ...here. * gnu/packages/openssl.scm: Delete file. * gnu-system.am (GNU_SYSTEM_MODULES): Unregister deleted file. * gnu/packages/{admin.scm, bittorrent.scm, certs.scm, ci.scm, cyrus-sasl.scm, databases.scm, dns.scm, ebook.scm, enlightenment.scm, gnunet.scm, libreoffice.scm, links.scm, mail.scm, messaging.scm, networking.scm, ntp.scm, openldap.scm, package-management.scm, pdf.scm, python.scm, qt.scm, rdesktop.scm, rdf.scm, ruby.scm, ssh.scm, synergy.scm, tor.scm, version-control.scm, video.scm, vpn.scm, w3m.scm, web.scm, weechat.scm, xiph.scm}: Adapt module import.
* gnu: python-mccabe: Fix license field.Eric Bavier2015-06-29
| | | | | * gnu/packages/python.scm (python-mccabe)[license]: 'expat' -> 'license:expat'.
* gnu: Add python-flake8.Cyril Roelandt2015-06-30
| | | | * gnu/packages/python.scm (python-flake8, python2-flake8): New variables.
* gnu: Add python-mccabe.Cyril Roelandt2015-06-30
| | | | * gnu/packages/python.scm (python-mccabe, python2-mccabe): New variables.
* gnu: Add python-pyflakes.Cyril Roelandt2015-06-30
| | | | * gnu/packages/python.scm (python-pyflakes, python2-pyflakes): New variables.
* gnu: Add python-pep8.Cyril Roelandt2015-06-30
| | | | * gnu/packages/python.scm (python-pep8, python2-pep8): New variables.
* gnu: Add python2-fastlmm.Ricardo Wurmus2015-06-26
| | | | * gnu/packages/python.scm (python2-fastlmm): New variable.
* gnu: Add python2-pysnptools.Ricardo Wurmus2015-06-26
| | | | * gnu/packages/python.scm (python2-pysnptools): New variable.
* gnu: Replace versioned gfortran inputs with just "gfortran".Ricardo Wurmus2015-06-25
| | | | | | | | | | | | | | | * gnu/packages/julia.scm (julia)[inputs]: Replace "gfortran-4.8" with "gfortran". * gnu/packages/machine-learning.scm (randomjungle)[native-inputs]: Likewise. * gnu/packages/maths.scm (arpack-ng, lapack, petsc, superlu) (superlu-dist, openblas, openspecfun, atlas)[inputs]: Likewise. (octave)[native-inputs]: Likewise. (gmsh)[propagated-inputs]: Likewise. * gnu/packages/mpi.scm (openmpi)[inputs]: Likewise. * gnu/packages/python.scm (python-numpy-bootstrap)[native-inputs]: Likewise. * gnu/packages/python.scm (python-scipy)[native-inputs]: Likewise. * gnu/packages/statistics.scm (r)[inputs]: Replace "gfortran-4.9" with "gfortran".
* gnu: python-scikit-learn: Update to 0.16.1.Ricardo Wurmus2015-06-15
| | | | * gnu/packages/python.scm (python-scikit-learn): Update to 0.16.1.
* gnu: python-scikit-learn: Use OpenBLAS instead of ATLAS.Ricardo Wurmus2015-06-15
| | | | | | | * gnu/packages/python.scm (python-scikit-learn)[inputs]: Replace "atlas" with "openblas". * gnu/packages/python.scm (python-scikit-learn)[arguments]: Remove build phase 'set-environment-variables, which is only needed when ATLAS is used.
* gnu: python-scipy: Build with OpenBLAS and lapack.Ricardo Wurmus2015-06-15
| | | | | | | * gnu/packages/python.scm (python-scipy)[inputs]: Remove "atlas", add "lapack" and "openblas". * gnu/packages/python.scm (python-scipy)[arguments]: Replace phase "set-environment-variables" with "configure-openblas".
* gnu: python-numpy-bootstrap: Add lapack to inputs.Ricardo Wurmus2015-06-15
| | | | | * gnu/packages/python.scm (python-numpy-bootstrap)[inputs]: Add lapack to inputs, because OpenBLAS does not include lapack functions.
* gnu: python: Disable ssl test that fails with openssl-1.0.2b.Mark H Weaver2015-06-13
| | | | | | * gnu/packages/patches/python-disable-ssl-test.patch: New file. * gnu-system.am (dist_patch_DATA): Add it. * gnu/packages/python.scm (python): Add patch.
* gnu: python-numpy: Build against OpenBLAS.Ricardo Wurmus2015-06-07
| | | | | | | | | * gnu/packages/python.scm (python-numpy)[inputs]: Use "openblas" instead of "atlas". * gnu/packages/python.scm (python-numpy)[arguments]: Configure build against OpenBLAS. Modified-By: Mark H Weaver <mhw@netris.org>
* python-pillow: Update to 2.8.1, remove duplicated ones.宋文武2015-05-29
| | | | | | * gnu/packages/python.scm (python-pillow): Update to 2.8.1. [inputs]: Add freetype and libwebp. (python-pillow, python2-pillow): Remove duplicated variables.
* gnu: dbus-glib: Propagate inputs dbus and glib.Andreas Enge2015-05-23
| | | | | | | | | | | * gnu/packages/glib.scm (dbus-glib): Propagate inputs dbus and glib. * gnu/packages/audio.scm (patchage), gnu/packages/gnuzilla.scm (icecat), gnu/packages/python.scm (python-dbus): Drop inputs dbus and glib. * gnu/packages/gnome.scm (colord, gconf, gnome-vfs, upower), gnu/packages/mail.scm (claws-mail), gnu/packages/messaging.scm (hexchat), gnu/packages/wicd.scm (wicd): Drop input dbus.
* gnu: Add python-rq.Ricardo Wurmus2015-05-22
| | | | * gnu/packages/python.scm (python-rq, python2-rq): New variables.
* gnu: Add python-redis.Ricardo Wurmus2015-05-22
| | | | * gnu/packages/python.scm (python-redis, python2-redis): New variables.
* gnu: Add python-click.Ricardo Wurmus2015-05-22
| | | | * gnu/packages/python.scm (python-click, python2-click): New variables.
* gnu: Add python-pyzmq.Ricardo Wurmus2015-05-22
| | | | * gnu/packages/python.scm (python-pyzmq, python2-pyzmq): New variables.
* gnu: Add python-seaborn.Ricardo Wurmus2015-05-15
| | | | * gnu/packages/python.scm (python-seaborn, python2-seaborn): New variables.
* gnu: Add python-pandas.Ricardo Wurmus2015-05-15
| | | | * gnu/packages/python.scm (python-pandas, python2-pandas): New variables.
* gnu: Add python-scikit-image.Ricardo Wurmus2015-05-15
| | | | | * gnu/packages/python.scm (python-scikit-image, python2-scikit-image): New variables.
* gnu: scons: Update to 2.3.4.Mark H Weaver2015-05-07
| | | | * gnu/packages/python.scm (scons): Update to 2.3.4.
* gnu: Add python-sympy.Ricardo Wurmus2015-05-04
| | | | * gnu/packages/python.scm (python-sympy, python2-sympy): New variables.
* gnu: Add python-tornado.Ricardo Wurmus2015-04-28
| | | | * gnu/packages/python.scm (python-tornado, python2-tornado): New variables.
* gnu: Add python2-backport-ssl-match-hostname.Ricardo Wurmus2015-04-28
| | | | * gnu/packages/python.scm (python2-backport-ssl-match-hostname): New variable.
* gnu: Add python-waf.宋文武2015-04-22
| | | | * gnu/packages/python.scm (python-waf, python2-waf): New variables.
* gnu: python: Use 'version-major+minor' to compute PYTHONPATH.宋文武2015-04-14
| | | | | | | Fixes a regression introduced in 08c0450. * gnu/packages/python.scm (python)[native-search-paths]: Use 'version-major+minor' to compute PYTHONPATH.
* python: Update to 3.4.3Cyril Roelandt2015-04-10
| | | | | | | * gnu/packages/python.scm (python): Update from 3.3.5 to 3.4.3. * gnu/packages/patches/python-fix-tests.patch: Update the required test fixes. * gnu/packages/patches/python-libffi-mips-n32-fix.patch: Remove it... * gnu-system.am (dist_patch_DATA): ... and do not reference it here.
* gnu: Add python-drmaa.Ricardo Wurmus2015-04-07
| | | | * gnu/packages/python.scm (python-drmaa, python2-drmaa): New variables.
* gnu: Add python-singledispatch.David Thompson2015-04-05
| | | | | * gnu/packages/python.scm (python-singledispatch, python2-singledispatch): New variables.
* gnu: python-requests: Fix Python 2 version and add support for Python 3.David Thompson2015-04-05
| | | | | * gnu/packages/python.scm (python-requests): New variable. (python2-requests): Generate based on Python 3 variant.
* gnu: Add python-networkx.Ricardo Wurmus2015-03-31
| | | | * gnu/packages/python.scm (python-networkx, python2-networkx): New variables.
* gnu: Add python-decorator.Ricardo Wurmus2015-03-31
| | | | | * gnu/packages/python.scm (python-decorator, python2-decorator): New variables.
* gnu: python: Do not use patchelf.Mark H Weaver2015-03-24
| | | | | | | * gnu/packages/python.scm (python-2): Add rpath for lib directory of output to LDFLAGS. Remove 'patchelf' from inputs. Remove #:modules and #:imported-modules from arguments. Remove 'add-lib-to-runpath' phase. (python): Do not add #:modules to inherited package arguments.
* gnu: Add python-h5py and python2-h5py.Ricardo Wurmus2015-03-23
| | | | * gnu/packages/python.scm (python-h5py, python2-h5py): New variables.
* gnu: Add python2-xlib.Ludovic Courtès2015-03-17
| | | | * gnu/packages/python.scm (python2-xlib): New variable.
* gnu: Update packages to use 'non-copyleft' instead of 'bsd-style'.Ludovic Courtès2015-03-14
| | | | | | | | | | | | | | | | | * gnu/packages/avr.scm, gnu/packages/compression.scm, gnu/packages/curl.scm, gnu/packages/cyrus-sasl.scm, gnu/packages/databases.scm, gnu/packages/firmware.scm, gnu/packages/flex.scm, gnu/packages/fontutils.scm, gnu/packages/gd.scm, gnu/packages/ghostscript.scm, gnu/packages/gnunet.scm, gnu/packages/graphics.scm, gnu/packages/hugs.scm, gnu/packages/image.scm, gnu/packages/linux.scm, gnu/packages/mail.scm, gnu/packages/maths.scm, gnu/packages/mit-krb5.scm, gnu/packages/python.scm, gnu/packages/rdf.scm, gnu/packages/ssh.scm, gnu/packages/tcl.scm, gnu/packages/xdisorg.scm, gnu/packages/xiph.scm, gnu/packages/yasm.scm, gnu/packages/zip.scm: Use 'non-copyleft' instead of 'bsd-style'.
* gnu: python-testlib: Fix license field.Mark H Weaver2015-03-07
| | | | | | | | Fixes a problem introduced in a1920bc9f25210b2. Debugged by David Thompson. * gnu/packages/python.scm (python-testlib)[license]: 'expat' -> 'license:expat'.
* gnu: Add python-testlib and python2-testlib.Federico Beffa2015-03-07
| | | | * gnu/packages/python.scm (python-testlib, python2-testlib): New variables.
* gnu: python2-pil: Adapt to newer Freetype.Andreas Enge2015-03-07
| | | | * gnu/packages/python.scm (python2-pil): Add snippet.
* gnu: Move 'which' to (gnu packages base).Ludovic Courtès2015-03-04
| | | | | | | | | | | | | | | | | | | | | * gnu/packages/which.scm: Remove. * gnu-system.am (GNU_SYSTEM_MODULES): Remove it. * gnu/packages/base.scm (which): New variable. * gnu/packages/aspell.scm, gnu/packages/audio.scm, gnu/packages/autogen.scm, gnu/packages/cdrom.scm, gnu/packages/compression.scm, gnu/packages/datamash.scm, gnu/packages/games.scm, gnu/packages/glib.scm, gnu/packages/gnu-pw-mgr.scm, gnu/packages/gnutls.scm, gnu/packages/gps.scm, gnu/packages/guile.scm, gnu/packages/java.scm, gnu/packages/libevent.scm, gnu/packages/linux.scm, gnu/packages/lisp.scm, gnu/packages/node.scm, gnu/packages/ntp.scm, gnu/packages/orpheus.scm, gnu/packages/pciutils.scm, gnu/packages/python.scm, gnu/packages/qt.scm, gnu/packages/rsync.scm, gnu/packages/sawfish.scm, gnu/packages/scheme.scm, gnu/packages/ssh.scm, gnu/packages/statistics.scm, gnu/packages/texlive.scm, gnu/packages/wdiff.scm: Adjust accordingly.
* Merge branch 'core-updates'.Ludovic Courtès2015-03-04
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| * Merge branch 'master' into core-updatesMark H Weaver2015-03-01
| |\ | | | | | | | | | | | | Conflicts: gnu/packages/gnupg.scm
| * | gnu: Add 'file-name' fields for github source tarballs without a name.Mark H Weaver2015-02-28
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * gnu/packages/aarddict.scm (aarddict), gnu/packages/algebra.scm (arb), gnu/packages/audio.scm (jack-2, lvtk), gnu/packages/bioinformatics.scm (bedops, bedtools, bowtie), gnu/packages/game-development.scm (tiled), gnu/packages/games.scm (minetest-data, minetest, retroarch), gnu/packages/jrnl.scm (jrnl), gnu/packages/kde.scm (qjson), gnu/packages/libevent.scm (libuv), gnu/packages/linux.scm (pflask), gnu/packages/mail.scm (offlineimap, libetpan), gnu/packages/maths.scm (arpack-ng), gnu/packages/ninja.scm (ninja), gnu/packages/nutrition.scm (gourmet), gnu/packages/python.scm (python-cairocffi), gnu/packages/rdf.scm (lrdf), gnu/packages/ruby.scm (ruby-i18n), gnu/packages/sxiv.scm (sxiv): Add 'file-name' field to origin.
| * | gnu: Remove now unneeded 'localedef' invocations.Ludovic Courtès2015-02-27
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | This is a followup to commit b0fd2bd. * gnu/packages/gawk.scm (gawk)[arguments] <install-locales>: Add comment on why we leave this here. * gnu/packages/guile.scm (guile-ncurses)[arguments]: Remove 'install-locales' phase. * gnu/packages/swig.scm (swig)[arguments]: Likewise. * gnu/packages/python.scm (python-matplotlib): Remove 'LOCPATH' setting and 'localedef' invocation. (python-scipy): Likewise.
| * | gnu: Remove now unneeded 'unpack' phases for unzip.Ludovic Courtès2015-02-27
| | | | | | | | | | | | | | | | | | | | | | | | | | | This is a followup to commit cd0385b. * gnu/packages/bioinformatics.scm (hisat)[arguments]: Remove 'unpack' phase. * gnu/packages/image.scm (freeimage): Likewise. * gnu/packages/python.scm (python2-cssutils): Likewise.
* | | gnu: Add snakemake.Ricardo Wurmus2015-03-03
| | | | | | | | | | | | * gnu/packages/python.scm (snakemake): New variable.
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