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* gnu: r-openssl: Update to 1.4.Ricardo Wurmus2019-06-01
| | | | * gnu/packages/statistics.scm (r-openssl): Update to 1.4.
* gnu: r-biocviews: Update to 1.52.2.Ricardo Wurmus2019-06-01
| | | | | * gnu/packages/bioinformatics.scm (r-biocviews): Update to 1.52.2. [propagated-inputs]: Add r-biocmanager.
* gnu: Add gash.Timothy Sample2019-06-01
| | | | * gnu/packages/shells.scm (gash): New variable.
* gnu: Add txr.Guillaume LE VAILLANT2019-06-01
| | | | | | | | * gnu/packages/lisp.scm (txr): New variable. * gnu/packages/patches/txr-shell.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* tests: Indent hackage testsRobert Vollmert2019-06-01
| | | | | | * tests/hackage.scm: Reindent using etc/indent-code.el. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* tests: hackage: Don't mock hackage-fetch.Robert Vollmert2019-06-01
| | | | | | | * tests/hackage.scm: Pass a string input port to tests instead of mocking hackage download. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* tests: hackage: Factor out package pattern.Robert Vollmert2019-06-01
| | | | | | * tests/hackage.scm: Import result pattern matching via helper. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* lzlib: 'make-lzip-input-port' better handles end of decompression.Ludovic Courtès2019-06-01
| | | | | | | | Suggested by Pierre Neidhardt <mail@ambrevar.xyz>. * guix/lzlib.scm (lzread!): Call 'lz-decompress-finish' when 'feed-decoder!' returns EOF. Call 'lz-decompress-finished?' to determine end of compression.
* gnu: linux-libre: Update to 5.1.6.Mark H Weaver2019-06-01
| | | | | * gnu/packages/linux.scm (%linux-libre-version): Update to 5.1.6. (%linux-libre-hash): Update hash.
* gnu: linux-libre@4.19: Update to 4.19.47.Mark H Weaver2019-06-01
| | | | | * gnu/packages/linux.scm (%linux-libre-4.19-version): Update to 4.19.47. (%linux-libre-4.19-hash): Update hash.
* gnu: linux-libre@4.14: Update to 4.14.123.Mark H Weaver2019-06-01
| | | | | * gnu/packages/linux.scm (%linux-libre-4.14-version): Update to 4.14.123. (%linux-libre-4.14-hash): Update hash.
* gnu: linux-libre@4.9: Update to 4.9.180.Mark H Weaver2019-06-01
| | | | * gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.180.
* import: hackage: Update list of ghc-included packages.Robert Vollmert2019-06-01
| | | | | | | | | | | | | | Update the list of excepted dependencies for current ghc-8.4, based on the release notes at https://downloads.haskell.org/~ghc/8.4.3/docs/html/users_guide/8.4.3-notes.html Particularly, this adds `text` to the list, which is a dependency of `parsec` which was already on the list before, causing build failures with updated versions of the `text` package. * guix/import/hackage.scm (ghc-standard-libraries): Update list. Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
* gnu: gnucash-docs: Update to 3.5.Vasile Dumitrascu2019-05-31
| | | | | | * gnu/packages/gnucash.scm (gnucash-docs): Update to 3.5. Signed-off-by: Kei Kebreau <kkebreau@posteo.net>
* gnu: gnucash: Update to 3.5.Vasile Dumitrascu2019-05-31
| | | | | | | | | * gnu/packages/gnucash.scm (gnucash): Update to 3.5. [source]: Remove unneeded patch. * gnu/packages/patches/gnucash-fix-test-transaction-failure.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Remove patch. Signed-off-by: Kei Kebreau <kkebreau@posteo.net>
* gnu: dealii-openmpi: Add hdf5-parallel-openmpi input.Eric Bavier2019-05-31
| | | | * gnu/packages/maths.scm (dealii-openmpi)[inputs]: Add hdf5-parallel-openmpi.
* gnu: slepc: Update to 3.11.1.Eric Bavier2019-05-31
| | | | | | * gnu/packages/maths.scm (slepc): Update to 3.11.1. [native-inputs]: Add petsc:examples. [arguments]: Add PETSCCONFIGDIR to #:make-flags.
* gnu: petsc: Update to 3.11.2.Eric Bavier2019-05-31
| | | | * gnu/packages/maths.scm (petsc): Update to 3.11.2.
* gnu: petsc-complex-mpi: Setup MPI for tests.Eric Bavier2019-05-31
| | | | | * gnu/packages/maths.scm (petsc-complex-mpi)[arguments]: Add 'mpi-setup phase.
* gnu: Add mousepad.Kei Kebreau2019-05-31
| | | | * gnu/packages/xfce.scm (mousepad): New variable.
* gnu: Add zbar.Guillaume LE VAILLANT2019-05-31
| | | | | | * gnu/packages/aidc.scm (zbar): New variable. Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
* services: Add patchwork.Christopher Baines2019-05-31
| | | | | | | | | * gnu/service/web.scm (<patchwork-database-configuration> <patchwork-settings-module>, <patchwork-configuration>): New record types. (patchwork-virtualhost): New procedure. (patchwork-service-type): New variable. * gnu/tests/web.scm (%test-patchwork): New variable. * doc/guix.text (Web Services): Document it.
* gnu: Add patchwork.Christopher Baines2019-05-31
| | | | * gnu/packages/patchutils.scm (patchwork): New variable.
* services: Add getmail.Christopher Baines2019-05-31
| | | | | | | | | | | | | | | Getmail is a mail retriever written in Python, this commit adds a service-type to run getmail. I'm looking at this, as it's a convinient way of getting mailing list messages in to Patchwork. I initially tried putting this in the (gnu services mail) module, but due to also trying to use the define-configuration pattern, it conflicted with the dovecot service. * gnu/services/getmail.scm: New file. * gnu/local.mk: Add it. * gnu/tests/mail.scm (%getmail-os, %test-getmail): New variables. (run-getmail-test): New procedure.
* gnu: Go 1.4: Fix typo.Leo Famulari2019-05-31
| | | | * gnu/packages/golang.scm (go-1.4): Fix typo in comment.
* gnu: gtksourceview-2: Fix finding default data.Julien Lepiller2019-05-31
| | | | | | | * gnu/packages/patches/gtksourceview-2-add-default-directory.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/gtk.scm (gtksourceview-2)[source]: Use it.
* gnu: php: Update to 7.3.6.Julien Lepiller2019-05-31
| | | | * gnu/packages/php.scm (php): Update to 7.3.6.
* gnu: Add r-birta.Ricardo Wurmus2019-05-31
| | | | * gnu/packages/bioconductor.scm (r-birta): New variable.
* gnu: Add r-birewire.Ricardo Wurmus2019-05-31
| | | | * gnu/packages/bioconductor.scm (r-birewire): New variable.
* gnu: r-seriation: Update to 1.2-5.Ricardo Wurmus2019-05-31
| | | | * gnu/packages/cran.scm (r-seriation): Update to 1.2-5.
* gnu: emacs-diff-hl: Update to 1.8.6.Brian Leung2019-05-31
| | | | | | | * gnu/packages/emacs-xyz.scm (emacs-diff-hl): Update to 1.8.6. [source]: Fetch from git. Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
* gnu: emacs-helm: Update to 3.2.Brian Leung2019-05-31
| | | | | | * gnu/packages/emacs-xyz.scm (emacs-helm): Update to 3.2. Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
* gnu: emacs-counsel-tramp: Update to 0.6.3.Brian Leung2019-05-31
| | | | | | * gnu/packages/emacs-xyz.scm (emacs-counsel-tramp): Update to 0.6.3. Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
* gnu: emacs-editorconfig: Update to 0.8.0.Brian Leung2019-05-31
| | | | | | * gnu/packages/emacs-xyz.scm (emacs-editorconfig): Update to 0.8.0. Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
* gnu: emacs-exec-path-from-shell: Update to 1.12.Brian Leung2019-05-31
| | | | | | | * gnu/packages/emacs-xyz.scm (emacs-exec-path-from-shell): Update to 1.12. [source]: Use git-fetch. Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
* gnu: Add emacs-reformatter.LaFreniere, Joseph2019-05-31
| | | | | | * gnu/packages/emacs-xyz.scm (emacs-reformatter): New variable. Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
* gnu: Add emacs-ivy-pass.Joseph LaFreniere2019-05-31
| | | | | | * gnu/packages/emacs-xyz.scm (emacs-ivy-pass): New variable. Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
* gnu: kitty: Update to 0.14.1.Rutger Helling2019-05-31
| | | | * gnu/packages/terminals.scm (kitty): Update to 0.14.1.
* gnu: diffoscope: Update to version 115-1.7f3416f.Vagrant Cascadian2019-05-30
| | | | | | | | | * gnu/packages/package-management (diffoscope): [package] Update to version 115-1.7f3416f. [source] Switch to using git-fetch. [inputs] Move python-pytest and python-chardet ... [native-inputs] ... to here. [arguments] Move comment to fit line length.
* gnu: r-biocviews: Update to 1.52.1.Ricardo Wurmus2019-05-30
| | | | * gnu/packages/bioinformatics.scm (r-biocviews): Update to 1.52.1.
* gnu: r-tibble: Update to 2.1.2.Ricardo Wurmus2019-05-30
| | | | * gnu/packages/statistics.scm (r-tibble): Update to 2.1.2.
* gnu: r-dose: Update to 3.10.1.Ricardo Wurmus2019-05-30
| | | | * gnu/packages/bioconductor.scm (r-dose): Update to 3.10.1.
* gnu: Add gthumb.Andy Tai2019-05-30
| | | | | | | * gnu/packages/gnome.scm (gthumb): New variable. Signed-off-by: Ricardo Wurmus <rekado@elephly.net> Co-authored-by: Ricardo Wurmus <rekado@elephly.net>
* gnu: sddm: Add QtQuick-related dependencies to sddm.Reza Alizadeh Majd2019-05-29
| | | | | | | | * gnu/packages/display-managers.scm (sddm): add QtQuick related dependencies to sddm package in order to `sddm-greeter` application to load user defined themes which are based on QtQuick. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* publish: Factorize 'compress-nar'.Ludovic Courtès2019-05-29
| | | | | * guix/scripts/publish.scm (compress-nar): New procedure. (bake-narinfo+nar): Use it.
* publish: Remove outdated comment.Ludovic Courtès2019-05-29
| | | | * guix/scripts/publish.scm (make-request-handler): Remove outdated TODO.
* gnu: r-statmod: Update to 1.4.32.Ricardo Wurmus2019-05-29
| | | | * gnu/packages/statistics.scm (r-statmod): Update to 1.4.32.
* gnu: r-fields: Update to 9.8-3.Ricardo Wurmus2019-05-29
| | | | * gnu/packages/cran.scm (r-fields): Update to 9.8-3.
* gnu: r-bayestestr: Update to 0.2.0.Ricardo Wurmus2019-05-29
| | | | * gnu/packages/cran.scm (r-bayestestr): Update to 0.2.0.
* gnu: Use make-linux-libre-headers.Carl Dong2019-05-29
| | | | | | | | | | | | | | * gnu/packages/linux.scm (make-linux-libre-headers): New variable. (linux-libre): Rename to... (linux-libre-5.1): ...this. (linux-libre-headers): Rename to... (linux-libre-headers-4.14.67): ...this. (linux-libre-5.1, linux-libre-headers-4.14.67): Use make-linux-libre-headers. (linux-libre-5.1, linux-libre-headers-5.1, linux-libre-headers-4.19, %linux-libre-4.15-version, %linux-libre-4.15-hash, linux-libre-4.15, linux-libre-headers-4.15, linux-libre-headers-4.14): New variables. Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
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