| Commit message (Collapse) | Author | Age |
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This is a followup to 1baee94.
* gnu/packages/bioinformatics.scm: Add missing import.
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Fixes <http://bugs.gnu.org/22753>.
Reported by Mark H Weaver <mhw@netris.org>.
* guix/scripts/system.scm (save-load-path-excursion): New variable.
(upgrade-shepherd-services): Add comment about the issue.
(switch-to-system): Use 'save-load-path-excursion' around
'primitive-load' call.
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* guix/store.scm (valid-path?): Improve docstring.
* doc/guix.texi (The Store): Update accordingly.
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Before that, /nar requests could succeed if the requested store item
exists but is invalid (although such requests were unlikely because the
corresponding narinfo request would have failed.)
* guix/scripts/publish.scm (render-nar): Add 'store' parameter. Use
'valid-path?' instead of 'file-exists?'.
(make-request-handler): Adjust 'render-nar' call accordingly.
* tests/publish.scm ("/nar/invalid"): New test.
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* gnu/packages/databases.scm (kyotocabinet): New variable.
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* gnu/packages/bioinformatics.scm (libbigwig): New variable.
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* gnu/packages/guile.scm (guile-json): Update to 0.5.0.
Signed-off-by: Andreas Enge <andreas@enge.fr>
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* gnu/packages/audio.scm (ardour): Update to 4.7.
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Fixes <http://bugs.gnu.org/22755>.
* gnu/packages/freedesktop.scm (xdg-utils): Propagate xprop and xset.
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This amends part of c8e2688.
* doc/guix.texi (Binary Installation): Improve wording of some parts.
Fix Upstart example. Remove incorrect paragraph about locales.
Reinstate bit about reproducing the binary tarball.
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Suggested by Chris Marusich <cmmarusich@gmail.com>.
* doc/guix.texi (Invoking guix pull): Add paragraph explaining that any
user can run 'guix pull'.
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* gnu/packages/patches/libssh-CVE-2014-0017.patch: Delete file.
* gnu/packages/patches/libssh-0.6.5-CVE-2016-0739.patch: New file.
* gnu-system.am (dist_patch_DATA): Adjust accordingly.
* gnu/packages/ssh.scm (libssh): Update to 0.7.3.
(libssh-0.5): Rename to...
(libssh-0.6): ... this. Update to 0.6.5.
[source]: Add patch for CVE-2016-0739.
(guile-ssh)[inputs]: Use libssh-0.6.
Modified-By: Mark H Weaver <mhw@netris.org>
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* gnu/packages/ssh.scm (libssh2): Update to 1.7.0.
(libssh2-1.4): New variable.
* gnu/packages/curl.scm (curl)[inputs]: Use libssh4-1.4.
Modified-By: Mark H Weaver <mhw@netris.org>
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* doc/guix.texi (Binary Installation): Provide some more details for binary
installation, in particular automatic starting of the daemon.
Signed-off-by: Andreas Enge <andreas@enge.fr>
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* doc/guix.texi (Shepherd Services): Add missing words.
(Invoking guix system): Fix typo.
(Service Types and Services): Fix typo.
* doc/contributing.texi (Submitting Patches): Fix typo.
Signed-off-by: Andreas Enge <andreas@enge.fr>
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* gnu/packages/gdb.scm (gdb): Update to 7.11.
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* gnu/packages/kde-frameworks.scm (kwindowsystem): Update to 5.19.0.
(extra-cmake-modules): Update to 5.19.0.
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* gnu/packages/bioinformatics.scm (r-topgo)[propagated-inputs]: Add
"r-graph".
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* gnu/packages/bioinformatics.scm (r-graph): New variable.
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* gnu/packages/bioinformatics.scm (r-org-mm-eg-db): New variable.
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* gnu/packages/bioinformatics.scm (r-org-dm-eg-db): New variable.
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* gnu/packages/bioinformatics.scm (r-org-ce-eg-db): New variable.
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* gnu/packages/bioinformatics.scm (r-org-hs-eg-db): New variable.
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Fixes <http://bugs.gnu.org/22740>.
Reported by Andreas Enge <andreas@enge.fr>.
* gnu/packages.scm (waiting, ftp-open*, check-package-freshness): Remove.
* guix/scripts/package.scm (options->installable): Adjust accordingly.
* emacs/guix-main.scm (package->manifest-entry*): Likewise.
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* guix/scripts/publish.scm (narinfo-string): Remove 'path-info'
parameter and add 'store' parameter. Call 'query-path-info'.
(render-narinfo): Adjust accordingly.
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Reported by myglc2 <myglc2@gmail.com>.
* gnu/packages/lsh.scm (lsh)[inputs]: Add XAUTH.
[arguments]: Modify 'XAUTH_PROGRAM' macro in 'server_x11.c'.
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* gnu/packages/lsh.scm (lsh)[arguments]: Use 'modify-phases' instead of
'alist-cons-before'.
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* gnu/services/desktop.scm (polkit-etc-files): Add the polkit package
itself to the list of packages to scan for .policy files. This add
support for pkexec.
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* gnu/packages/video.scm (mplayer)[arguments]: Use 'modify-phases'.
[source]: Use https.
[home-page]: Use https.
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* gnu/packages/video.scm (mplayer)[inputs]: Add libass, libmpeg2,
libvdpau, libx264, opus.
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* gnu/packages/ssh.scm (dropbear): Update to 2015.71.
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* gnu/packages/guile.scm (guile-next): Use the "2.2" directory for the
load paths.
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* gnu/services/herd.scm (report-action-error): Add missing newlines in
messages.
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Reported by Leo Famulari <leo@famulari.name>
and Ben Woodcroft <b.woodcroft@uq.edu.au>
at <http://bugs.gnu.org/22752>.
* guix/scripts/refresh.scm: Remove unneeded and harmful import of (guix
import gem).
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* doc/guix.texi (Version Numbers): Add example for VCS version numbers.
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* gnu/packages/xfce.scm (xfce4-xkb-plugin): New variable.
(xfce)[propagated-inputs]: Add it.
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* gnu/packages/freedesktop.scm (telepathy-logger)[arguments]: Disable parallel
tests.
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* gnu/packages/ldc.scm (rdmd): New variable.
Signed-off-by: Leo Famulari <leo@famulari.name>
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* gnu/packages/freedesktop.scm (modem-manager)[source]: Use HTTPS URL.
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* gnu/packages/mpd.scm (mpd): Update t0 0.19.12.
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* gnu/packages/mpd.scm (ncmpcpp): Update to 0.7.3.
[inputs]: Add icu4c.
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* gnu/packages/mpd.scm (ncmpcpp)[arguments]: Use 'modify-phases'.
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Fixes <http://bugs.gnu.org/22633>.
* gnu/build/vm.scm (load-in-linux-vm): Only pass "-enable-kvm" flag to qemu
if "/dev/kvm" is present.
* gnu/system/vm.scm (common-kvm-options): Same as above.
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* gnu/packages/pkg-config.scm (%pkg-config)[source]: Add non-HTTPS URL.
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* guix/grafts.scm (graft-derivation): Name 'name' a keyword parameter.
* guix/packages.scm (package-derivation, package-cross-derivation):
Adjust accordingly.
* tests/grafts.scm ("graft-derivation"): Likewise.
* tests/packages.scm ("package-derivation, indirect grafts"): Likewise.
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* guix/derivations.scm (<graft>, graft-derivation, %graft?)
(set-grafting): Move to...
* guix/grafts.scm: ... here. New file.
* guix/gexp.scm, guix/packages.scm, tests/packages.scm,
guix/scripts/build.scm: Use it.
* Makefile.am (MODULES): Add it.
(SCM_TESTS): Add tests/grafts.scm.
* tests/derivations.scm ("graft-derivation"): Move to...
* tests/grafts.scm: ... here. New file.
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* gnu/packages/qt.scm (python2-pyqt-4): Delete variable. It depends on Qt 4,
which does not receive security updates any more.
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* gnu/packages/kde.scm (qjson): Move from here...
* gnu/packages/qt.scm (qjson): ...to here.
* gnu/packages/pumpio.scm: Drop inclusion of (gnu packages kde).
* gnu/packages/kde.scm: Delete file.
* gnu-system.am (GNU_SYSTEM_MODULES): Unregister it.
* gnu/packages/rdf.scm (soprano): Delete variable.
KDE 4 relies on Qt 4, which does not receive security updates any more.
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* gnu/packages/statistics.scm (python-patsy)[properties]: New field.
(python2-patsy): Use 'strip-python2-variant'.
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* gnu/packages/statistics.scm (python-patsy, python2-patsy): Update to 0.4.1.
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