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* gnu: fortify-headers: Update to 1.0.Tobias Geerinckx-Rice2018-09-10
| | | | * gnu/packages/suckless.scm (fortify-headers): Update to 1.0.
* gnu: python-genshi: Update to 0.7.1.Tobias Geerinckx-Rice2018-09-10
| | | | | | | | | | | | | * gnu/packages/python-web.scm (python-genshi): Update to 0.7.1. [source]: Use GIT-FETCH and GIT-FILE-NAME. Remove patches. * gnu/packages/patches/python-genshi-add-support-for-python-3.4-AST.patch, gnu/packages/patches/python-genshi-buildable-on-python-2.7.patch, gnu/packages/patches/python-genshi-disable-speedups-on-python-3.3.patch, gnu/packages/patches/python-genshi-fix-tests-on-python-3.5.patch, gnu/packages/patches/python-genshi-isstring-helper.patch, gnu/packages/patches/python-genshi-stripping-of-unsafe-script-tags.patch: Delete files. * gnu/local.mk (dist_patch_DATA): Remove them.
* gnu: python-sockjs-tornado: Update to 1.0.5.Tobias Geerinckx-Rice2018-09-10
| | | | * gnu/packages/python-web.scm (python-sockjs-tornado): Update to 1.0.5.
* gnu: python-sockjs-tornado: Edit synopsis & description.Tobias Geerinckx-Rice2018-09-10
| | | | | * gnu/packages/python-web.scm (python-sockjs-tornado)[synopsis] [description]: Pick nits.
* gnu: Rename ldc.scm to dlang.scm.Pjotr Prins2018-09-10
| | | | | | * gnu/packages/ldc.scm: Rename to... * gnu/packages/dlang.scm: ... this. * gnu/local.mk (GNU_SYSTEM_MODULES): Adjust accordingly.
* gnu: ldc: Update to 1.10.0.Pjotr Prins2018-09-10
| | | | | | | | | | | * gnu/packages/ldc.scm (ldc): Update to 1.10.0. [native-inputs]: Switch to LLVM and CLANG. (ldc-bootstrap)[synopsis, description]: Tweak. * gnu/packages/patches/ldc-disable-phobos-tests.patch: New file. * gnu/packages/patches/ldc-1.7.0-disable-phobos-tests.patch: Remove. * gnu/local.mk (dist_patch_DATA): Adjust accordingly. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* gnu: Add hstr.Benjamin Slade2018-09-10
| | | | * gnu/packages/shellutils.scm (hstr): New variable.
* substitute: Ignore exceptions thrown by 'set-thread-name'.Ludovic Courtès2018-09-10
| | | | | | | | Fixes <https://bugs.gnu.org/32669>. Reported by Ricardo Wurmus <rekado@elephly.net>. * guix/scripts/substitute.scm (guix-substitute): Swallow 'system-error' exceptions around 'set-thread-name' call.
* syscalls: Report lack of a libc symbol as ENOSYS.Ludovic Courtès2018-09-10
| | | | | * guix/build/syscalls.scm (syscall->procedure): Throw to 'system-error with ENOSYS when NAME cannot be found.
* gnu: emacs-guix: Update to 0.5.Alex Kost2018-09-10
| | | | | | * gnu/packages/emacs.scm (emacs-guix): Update to 0.5. [propagated-inputs]: Add 'guile-gcrypt'. [arguments]: Adjust #:configure-flags accordingly.
* gnu: emacs-build-farm: Update to 0.2.1.Alex Kost2018-09-10
| | | | | * gnu/packages/emacs.scm (emacs-build-farm): Update to 0.2.1. Change source from gitlab to notabug.
* gnu: emacs-bui: Update to 1.2.0.Alex Kost2018-09-10
| | | | | * gnu/packages/emacs.scm (emacs-bui): Update to 1.2.0. Change source from github to notabug.
* gnu: Add python-pygenometracks.Ricardo Wurmus2018-09-10
| | | | * gnu/packages/bioinformatics.scm (python-pygenometracks): New variable.
* gnu: Add python-hicexplorer.Ricardo Wurmus2018-09-10
| | | | * gnu/packages/bioinformatics.scm (python-hicexplorer): New variable.
* gnu: Add python-cooler.Ricardo Wurmus2018-09-10
| | | | * gnu/packages/bioinformatics.scm (python-cooler): New variable.
* gnu: Add python-pyfaidx.Ricardo Wurmus2018-09-10
| | | | * gnu/packages/bioinformatics.scm (python-pyfaidx): New variable.
* gnu: Add python-pypairix.Ricardo Wurmus2018-09-10
| | | | * gnu/packages/bioinformatics.scm (python-pypairix): New variable.
* gnu: Add python-intervaltree.Ricardo Wurmus2018-09-10
| | | | * gnu/packages/bioinformatics.scm (python-intervaltree): New variable.
* gnu: Add python-dask.Ricardo Wurmus2018-09-10
| | | | * gnu/packages/python.scm (python-dask): New variable.
* gnu: Add python-partd.Ricardo Wurmus2018-09-10
| | | | * gnu/packages/python.scm (python-partd): New variable.
* gnu: Add python-blosc.Ricardo Wurmus2018-09-10
| | | | * gnu/packages/python.scm (python-blosc): New variable.
* gnu: Add python-locket.Ricardo Wurmus2018-09-10
| | | | * gnu/packages/python.scm (python-locket): New variable.
* gnu: Add python-cloudpickle.Ricardo Wurmus2018-09-10
| | | | * gnu/packages/python.scm (python-cloudpickle): New variable.
* gnu: Add python-sortedcontainers.Ricardo Wurmus2018-09-10
| | | | * gnu/packages/python.scm (python-sortedcontainers): New variable.
* gnu: Add python-cytoolz.Ricardo Wurmus2018-09-10
| | | | * gnu/packages/python.scm (python-cytoolz): New variable.
* gnu: Add python-toolz.Ricardo Wurmus2018-09-10
| | | | * gnu/packages/python.scm (python-toolz): New variable.
* gnu: Add python-multiprocess.Ricardo Wurmus2018-09-10
| | | | * gnu/packages/python.scm (python-multiprocess): New variable.
* gnu: Add python-dill.Ricardo Wurmus2018-09-10
| | | | * gnu/packages/python.scm (python-dill): New variable.
* gnu: python-typing: Update to 3.6.6.Tobias Geerinckx-Rice2018-09-10
| | | | * gnu/packages/python.scm (python-typing): Update to 3.6.6.
* gnu: tinyproxy: Update to 1.10.0.Tobias Geerinckx-Rice2018-09-10
| | | | | * gnu/packages/web.scm (tinyproxy): Update to 1.10.0. [native-inputs]: Remove asciidoc.
* gnu: spectrwm: Update to 3.2.0.Tobias Geerinckx-Rice2018-09-10
| | | | | * gnu/packages/wm.scm (spectrwm): Update to 3.2.0. [arguments]: Remove 'fix-freetype-include' phase.
* gnu: Add yad.Mădălin Ionel Patrașcu2018-09-10
| | | | | | * gnu/packages/gtk.scm (yad): New variable. Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
* gnu: hpcguix-web: Update to 53e09ea.Ludovic Courtès2018-09-10
| | | | * gnu/packages/web.scm (hpcguix-web): Update to 53e09ea.
* services: hpcguix-web: Produce a log file and rotate it.Ludovic Courtès2018-09-10
| | | | | | | * gnu/services/web.scm (%hpcguix-web-log-file) (%hpcguix-web-log-rotations): New variables. (hpcguix-web-shepherd-service): Pass #:log-file. (hpcguix-web-service-type): Extend ROTTLOG-SERVICE-TYPE.
* services: tailon: Move to (gnu services web).Ludovic Courtès2018-09-10
| | | | | | | | | | | | | | | This allows (gnu services admin) to remain deeper in the module graph and to be used by (gnu services web). * gnu/services/admin.scm (<tailon-configuration-file>) (tailon-configuration-files-string) (tailon-configuration-file-compiler, <tailon-configuration>) (tailon-shepherd-service, %tailon-accounts) (tailon-service-type): Move to... * gnu/services/web.scm: ... here. * gnu/tests/admin.scm: Remove. Move test to... * gnu/tests/web.scm (%tailon-os) (run-tailon-test, %test-tailon): ... here.
* gnu: youtube-dl: Update to 2018.08.04.Alex Vong2018-09-10
| | | | * gnu/packages/video.scm (youtube-dl): Update to 2018.08.04.
* gnu: Add asignify.Leo Famulari2018-09-09
| | | | * gnu/packages/crypto.scm (asignify): New variable.
* gnu: certbot: Update to 0.27.1.Leo Famulari2018-09-09
| | | | | | | * gnu/packages/tls.scm (python-acme): Update to 0.27.1. [arguments]: Use invoke. (certbot): Update to 0.27.1. [native-inputs]: Use python-sphinx-1.6.
* gnu: libgd: Fix CVE-2018-{5711,1000222}.Leo Famulari2018-09-09
| | | | | | | * gnu/packages/patches/gd-CVE-2018-1000222.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/gd.scm (gd/fixed): New variable. * gnu/packages/php.scm (gd-for-php)[source]: Use 'gd-CVE-2018-1000222.patch'.
* ui: Add soft port for styling and filtering build output.Ricardo Wurmus2018-09-09
| | | | | | | | | * guix/ui.scm (build-output-port): New procedure. * guix/scripts/package.scm (%default-options): Print build trace. (guix-package): Use build-output-port. * guix/scripts/build.scm (guix-build): Use build-output-port. Co-authored-by: Sahithi Yarlagadda <sahi@swecha.net>
* ui: Add support for colorization.Sahithi Yarlagadda2018-09-09
| | | | | | | * guix/ui.scm (ansi-color-tables): New variable. (color, colorize-string): New procedures. Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
* gnu: r-chron: Update to 2.3-53.Ricardo Wurmus2018-09-09
| | | | * gnu/packages/statistics.scm (r-chron): Update to 2.3-53.
* gnu: r-annotationhub: Update to 2.12.1.Ricardo Wurmus2018-09-09
| | | | * gnu/packages/bioinformatics.scm (r-annotationhub): Update to 2.12.1.
* gnu: r-chippeakanno: Update to 3.14.2.Ricardo Wurmus2018-09-09
| | | | * gnu/packages/bioconductor.scm (r-chippeakanno): Update to 3.14.2.
* gnu: Update texmaker to 5.0.2.Roel Janssen2018-09-09
| | | | * gnu/packages/tex.scm (texmaker): Update to 5.0.2.
* gnu: ghostscript: Update replacement to 9.24 [security fixes].Marius Bakke2018-09-09
| | | | | | | | | | | | | | | | | | The following CVEs are fixed with this release: CVE-2018-15908, CVE-2018-15909, CVE-2018-15910, CVE-2018-15911, CVE-2018-16509, CVE-2018-16510, CVE-2018-16511, CVE-2018-16513, CVE-2018-16539, CVE-2018-16540, CVE-2018-16541, CVE-2018-16542, CVE-2018-16543. * gnu/packages/patches/ghostscript-CVE-2018-10194.patch: Delete file. * gnu/packages/patches/ghostscript-CVE-2018-16509.patch, gnu/packages/patches/ghostscript-bug-699708.patch: New files. * gnu/local.mk (dist_patch_DATA): Adjust accordingly. * gnu/packages/ghostscript.scm (ghostscript/fixed): Update to 9.24. [source](patches): Remove 'ghostscript-CVE-2018-10194.patch' and 'ghostscript-runpath.patch'. Add 'ghostscript-CVE-2018-16509.patch' and 'ghostscript-bug-699708.patch'. [arguments]: Add LDFLAGS to #:configure-flags, and a phase to create output directory.
* gnu: jbig2dec: Replace with 0.15 [security fixes].Marius Bakke2018-09-09
| | | | | * gnu/packages/image.scm (jbig2dec-0.15): New public variable. (jbig2dec)[replacement]: New field.
* gnu: OpenBLAS: Update source URI.Marius Bakke2018-09-09
| | | | | * gnu/packages/maths.scm (openblas)[source](uri): Use the more stable SourceForge mirror.
* gnu: openal: Update to 1.19.0.Marius Bakke2018-09-09
| | | | * gnu/packages/audio.scm (openal): Update to 1.19.0.
* gnu: glm: Update to 0.9.9.1.Marius Bakke2018-09-09
| | | | * gnu/packages/maths.scm (glm): Update to 0.9.9.1.
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