diff options
Diffstat (limited to 'gnu')
| -rw-r--r-- | gnu/packages/bioinformatics.scm | 36 |
1 files changed, 36 insertions, 0 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 0059ed36ad..13ed94c1c2 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -7698,6 +7698,42 @@ of transcriptional heterogeneity among single cells.") ;; See https://github.com/hms-dbmi/scde/issues/38 (license license:gpl2))) +(define-public r-misha + (package + (name "r-misha") + (version "4.1.0") + (source + (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/tanaylab/misha") + (commit version))) + (file-name (git-file-name name version)) + (sha256 + (base32 + "0bgivx3lzjh3173jsfrhb5kvhjsn53br0n4hmyx7i3dwy2cnnp2p")) + ;; Delete bundled executable. + (snippet + '(delete-file "exec/bigWigToWig")))) + (build-system r-build-system) + (arguments + `(#:phases + (modify-phases %standard-phases + (add-after 'unpack 'do-not-use-bundled-bigWigToWig + (lambda* (#:key inputs #:allow-other-keys) + (substitute* "R/misha.R" + (("get\\(\".GLIBDIR\"\\), \"/exec/bigWigToWig") + (string-append "\"" + (assoc-ref inputs "kentutils") + "/bin/bigWigToWig")))))))) + (inputs + `(("kentutils" ,kentutils))) + (home-page "https://github.com/tanaylab/misha") + (synopsis "Toolkit for analysis of genomic data") + (description "This package is intended to help users to efficiently +analyze genomic data resulting from various experiments.") + (license license:gpl2))) + (define-public r-centipede (package (name "r-centipede") |