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-rw-r--r--gnu/packages/mpi.scm23
1 files changed, 13 insertions, 10 deletions
diff --git a/gnu/packages/mpi.scm b/gnu/packages/mpi.scm
index 93157e2692..517f912417 100644
--- a/gnu/packages/mpi.scm
+++ b/gnu/packages/mpi.scm
@@ -42,7 +42,7 @@
(define-public hwloc
(package
(name "hwloc")
- (version "1.11.7")
+ (version "1.11.8")
(source (origin
(method url-fetch)
(uri (string-append "https://www.open-mpi.org/software/hwloc/v"
@@ -50,7 +50,7 @@
"/downloads/hwloc-" version ".tar.bz2"))
(sha256
(base32
- "0acph1mf7588hfx8ds26ncr6nw5fd9x92adm11fwin7f93i10sdb"))))
+ "0karxv4r1r8sa7ki5aamlxdvyvz0bvzq4gdhq0yi5nc4a0k11vzc"))))
(build-system gnu-build-system)
(outputs '("out" ;'lstopo' & co., depends on Cairo, libx11, etc.
"lib" ;small closure
@@ -132,9 +132,7 @@ bind processes, and much more.")
`(("pkg-config" ,pkg-config)
("perl" ,perl)))
(arguments
- `(#:configure-flags `("--enable-builtin-atomics"
-
- "--enable-mpi-ext=affinity" ;cr doesn't work
+ `(#:configure-flags `("--enable-mpi-ext=affinity" ;cr doesn't work
"--enable-memchecker"
"--with-sge"
@@ -148,16 +146,21 @@ bind processes, and much more.")
(assoc-ref %build-inputs "hwloc")))
#:phases (modify-phases %standard-phases
(add-before 'build 'remove-absolute
- ;; Remove compiler absolute file names (OPAL_FC_ABSOLUTE
- ;; etc.) to reduce the closure size. See
- ;; <https://lists.gnu.org/archive/html/guix-devel/2017-07/msg00388.html>
- ;; and
- ;; <https://www.mail-archive.com/users@lists.open-mpi.org//msg31397.html>.
(lambda _
+ ;; Remove compiler absolute file names (OPAL_FC_ABSOLUTE
+ ;; etc.) to reduce the closure size. See
+ ;; <https://lists.gnu.org/archive/html/guix-devel/2017-07/msg00388.html>
+ ;; and
+ ;; <https://www.mail-archive.com/users@lists.open-mpi.org//msg31397.html>.
(substitute* '("orte/tools/orte-info/param.c"
"oshmem/tools/oshmem_info/param.c"
"ompi/tools/ompi_info/param.c")
(("_ABSOLUTE") ""))
+ ;; Avoid valgrind (which pulls in gdb etc.).
+ (substitute*
+ '("./ompi/mca/io/romio/src/io_romio_component.c")
+ (("MCA_io_romio_COMPLETE_CONFIGURE_FLAGS")
+ "\"[elided to reduce closure]\""))
#t))
(add-before 'build 'scrub-timestamps ;reproducibility
(lambda _