diff options
Diffstat (limited to 'gnu/packages/cran.scm')
| -rw-r--r-- | gnu/packages/cran.scm | 95 |
1 files changed, 50 insertions, 45 deletions
diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 199dfbdbe4..005016b984 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -738,6 +738,8 @@ and vice-versa.") ("js-strftime" ,js-strftime) ("js-highlight" ,js-highlight) ("js-es5-shim" ,js-es5-shim))) + (native-inputs + `(("uglify-js" ,uglify-js))) (home-page "http://shiny.rstudio.com") (synopsis "Easy interactive web applications with R") (description @@ -983,14 +985,14 @@ coordinates.") (define-public r-geosphere (package (name "r-geosphere") - (version "1.5-7") + (version "1.5-10") (source (origin (method url-fetch) (uri (cran-uri "geosphere" version)) (sha256 (base32 - "186qdm5niq7v3d4w4rngx71znsgi44hnam7698bsx9ar5mg5b6wx")))) + "15xlgsmn0vwky1l13n6acdz6jn2b2na3gf6x367y3qh1f5w4zkan")))) (build-system r-build-system) (propagated-inputs `(("r-sp" ,r-sp))) (home-page "https://cran.r-project.org/web/packages/geosphere") @@ -2066,14 +2068,14 @@ topics for ecologists (ISBN 978-0-691-12522-0).") (define-public r-lpsolve (package (name "r-lpsolve") - (version "5.6.13") + (version "5.6.13.1") (source (origin (method url-fetch) (uri (cran-uri "lpSolve" version)) (sha256 (base32 - "13a9ry8xf5j1f2j6imqrxdgxqz3nqp9sj9b4ivyx9sid459irm6m")))) + "1f10ywlaaldgjj84vs108ly0nsbkrdgbn5d6qj7nk93j1x1xrn3a")))) (properties `((upstream-name . "lpSolve"))) (build-system r-build-system) (home-page "https://cran.r-project.org/web/packages/lpSolve") @@ -2204,14 +2206,14 @@ George Marsaglia are included.") (define-public r-ksamples (package (name "r-ksamples") - (version "1.2-8") + (version "1.2-9") (source (origin (method url-fetch) (uri (cran-uri "kSamples" version)) (sha256 (base32 - "15d5q5vpp4wx5rk5kjxjdxpwc8mkq5sbdz8gi07iscrvhzb5rzfr")))) + "1zs22p68d6320kcylisnk0b5wmpapxkyz15py09czxzw7npw8gms")))) (properties `((upstream-name . "kSamples"))) (build-system r-build-system) (propagated-inputs @@ -2892,14 +2894,14 @@ Laplace approximation and adaptive Gauss-Hermite quadrature.") (define-public r-jomo (package (name "r-jomo") - (version "2.6-7") + (version "2.6-8") (source (origin (method url-fetch) (uri (cran-uri "jomo" version)) (sha256 (base32 - "0lyvi32aikkvwdj0y2hc13kmmi0cw1icg8z9lcw10l8326sxm0vf")))) + "097zfdcqc3a45ay8xxbraqh8xsfyivskkdmc2b4ca4n979lx8vyb")))) (build-system r-build-system) (propagated-inputs `(("r-lme4" ,r-lme4) @@ -3494,14 +3496,14 @@ timeout. It can also poll several processes at once.") (define-public r-tsp (package (name "r-tsp") - (version "1.1-6") + (version "1.1-7") (source (origin (method url-fetch) (uri (cran-uri "TSP" version)) (sha256 (base32 - "1ym97xl2icjpfkrici0wig29w06bb704hp51v7h5liygjlwpkhlc")))) + "0rxxhvqi55869dg2p82hzg5kvgcqf9h60cjcg00k3pv9aw4x07kb")))) (properties `((upstream-name . "TSP"))) (build-system r-build-system) (propagated-inputs `(("r-foreach" ,r-foreach))) @@ -3581,14 +3583,14 @@ Markdown documents.") (define-public r-seriation (package (name "r-seriation") - (version "1.2-3") + (version "1.2-5") (source (origin (method url-fetch) (uri (cran-uri "seriation" version)) (sha256 (base32 - "1q6hw4hjw224b4y0dc0j630v2pgj6sn455nwkilb70w8k31hpk92")))) + "0sk4wfwxxhz3nwbcsfshb93gra4c9p5pvpsz00d7f9nkkmhs97ws")))) (build-system r-build-system) (propagated-inputs `(("r-cluster" ,r-cluster) @@ -3713,14 +3715,14 @@ to variables on the left-hand side of the assignment.") (define-public r-pillar (package (name "r-pillar") - (version "1.4.0") + (version "1.4.1") (source (origin (method url-fetch) (uri (cran-uri "pillar" version)) (sha256 (base32 - "1c8rwwh677vc92f4k6qj4mxl3acran1iqdv5dj6r1dyv7fvmcvfx")))) + "0mcc09caxm69pghhz6b8vawj9ni63aijv5qba53pg4ph7rxclwgm")))) (build-system r-build-system) (propagated-inputs `(("r-cli" ,r-cli) @@ -4995,14 +4997,14 @@ additional external tools on any platform.") (define-public r-openxlsx (package (name "r-openxlsx") - (version "4.1.0") + (version "4.1.0.1") (source (origin (method url-fetch) (uri (cran-uri "openxlsx" version)) (sha256 (base32 - "1n7z22pm78xa77fvn77kdn68az6xzxk36y11sqf0w6h6adri4yxb")))) + "1lflygpi1z4rlb1c6g6wsmi334maiiy7jhpg6ph4sw8lpvg12w4b")))) (build-system r-build-system) (propagated-inputs `(("r-rcpp" ,r-rcpp) @@ -5859,14 +5861,14 @@ intervals.") (define-public r-snakecase (package (name "r-snakecase") - (version "0.10.0") + (version "0.11.0") (source (origin (method url-fetch) (uri (cran-uri "snakecase" version)) (sha256 (base32 - "0325zkpyqa15lx7biq2cbimr2773332bp4jvcvnl00bjx41ia2fm")))) + "1ky1x2cp5rd0ffd9m1fji9sq4z4jsrpxzg30brw8bb4ihfjj114r")))) (build-system r-build-system) (propagated-inputs `(("r-stringi" ,r-stringi) @@ -6290,14 +6292,14 @@ Group (Non-)Overlap considerations.") (define-public r-refgenome (package (name "r-refgenome") - (version "1.7.3.1") + (version "1.7.7") (source (origin (method url-fetch) (uri (cran-uri "refGenome" version)) (sha256 (base32 - "1s4lxv5pqk6d0f0a9iclgv88yl346fwvzgraxh0gwpbym1yhh787")))) + "1za89bn3am1zgvm641qi1ab6kaqpll4rb9p9f1sjwvcgqq6065g5")))) (properties `((upstream-name . "refGenome"))) (build-system r-build-system) (propagated-inputs @@ -7786,14 +7788,14 @@ correlation, censored, ordered and multivariate problems.") (define-public r-bayesplot (package (name "r-bayesplot") - (version "1.6.0") + (version "1.7.0") (source (origin (method url-fetch) (uri (cran-uri "bayesplot" version)) (sha256 (base32 - "0in9cq2ybpa7njrwqx4l6nc8i01cjswsvzwlyiw465pi74aapr57")))) + "0h23sbfny2hcipvvfhq5aiwdh1vanizn7f8lpb9kffypxhcd7v7w")))) (build-system r-build-system) (inputs `(("pandoc" ,ghc-pandoc) @@ -7802,8 +7804,11 @@ correlation, censored, ordered and multivariate problems.") `(("r-dplyr" ,r-dplyr) ("r-ggplot2" ,r-ggplot2) ("r-ggridges" ,r-ggridges) + ("r-glue" ,r-glue) ("r-reshape2" ,r-reshape2) - ("r-rlang" ,r-rlang))) + ("r-rlang" ,r-rlang) + ("r-tibble" ,r-tibble) + ("r-tidyselect" ,r-tidyselect))) (home-page "http://mc-stan.org/bayesplot") (synopsis "Plotting for Bayesian models") (description @@ -7918,14 +7923,14 @@ differentiation.") (define-public r-bayestestr (package (name "r-bayestestr") - (version "0.1.0") + (version "0.2.0") (source (origin (method url-fetch) (uri (cran-uri "bayestestR" version)) (sha256 (base32 - "1m6gj55z3shm3m3mgqj8nk73wij67y617sl04rbj400wz9qrhfva")))) + "0729j4fdxkkvmh99nmny38dywidzgmipdjqbi2ljxygsn4jg7ysy")))) (properties `((upstream-name . "bayestestR"))) (build-system r-build-system) (propagated-inputs @@ -8797,14 +8802,14 @@ isosurfaces.") (define-public r-ks (package (name "r-ks") - (version "1.11.4") + (version "1.11.5") (source (origin (method url-fetch) (uri (cran-uri "ks" version)) (sha256 (base32 - "0d5i8458s8ri9pcx2jm003z1ajk7ha3pmw1sr6lgn6a8d7wgmvqb")))) + "06ymx244yknmpl6935l4pafqbm4gcbpnhqg7rinql6rrfr9mcrag")))) (build-system r-build-system) (propagated-inputs `(("r-fnn" ,r-fnn) @@ -10481,14 +10486,14 @@ Differences with other sparse matrix packages are: (define-public r-fields (package (name "r-fields") - (version "9.8-1") + (version "9.8-3") (source (origin (method url-fetch) (uri (cran-uri "fields" version)) (sha256 (base32 - "1zb44bm9mwbnld2q915nxxji3hqa025cmlaar7da35lyqlrjl30v")))) + "1q9x68dczjym56v7x90x4x5br59vj3dww6w8v42zd3yl17h7c1h1")))) (build-system r-build-system) (propagated-inputs `(("r-maps" ,r-maps) @@ -10724,14 +10729,14 @@ But it can also be used to do data analysis for small scale data sets.") (define-public r-cmprsk (package (name "r-cmprsk") - (version "2.2-7") + (version "2.2-8") (source (origin (method url-fetch) (uri (cran-uri "cmprsk" version)) (sha256 (base32 - "1imr3wpnj4g57n2x4ryahl4lk8lvq9y2r7319zv3k82mznha8bcm")))) + "1nacbzx950ygaqgnj0949skhwpzar5i3xlscd44jsimk2gsppx6z")))) (build-system r-build-system) (propagated-inputs `(("r-survival" ,r-survival))) @@ -10751,14 +10756,14 @@ JASA, 94:496-509.") (define-public r-etm (package (name "r-etm") - (version "1.0.4") + (version "1.0.5") (source (origin (method url-fetch) (uri (cran-uri "etm" version)) (sha256 (base32 - "0ws103b3pmli0z4xbyfxkly2wnnnxnnwc0r66qjjqjrlvm7pffl1")))) + "1yivbq8y0ijcl1m4nir4q9hp4pi6iphwxgjprygsdf7vp98wq677")))) (build-system r-build-system) (propagated-inputs `(("r-data-table" ,r-data-table) @@ -10777,14 +10782,14 @@ model with finite state space using the Aalen-Johansen estimator.") (define-public r-epi (package (name "r-epi") - (version "2.35") + (version "2.37") (source (origin (method url-fetch) (uri (cran-uri "Epi" version)) (sha256 (base32 - "1z3959761ryv54y6vsrxxvhrwzz50xrxn55pqh5y7lrxh91zdsvl")))) + "1lanr9x0c6w22406p56j7cwk6wck8njq6pscb4gzc613d68zj1lk")))) (properties `((upstream-name . "Epi"))) (build-system r-build-system) (propagated-inputs @@ -11155,14 +11160,14 @@ algorithms) can be computed and partitioned matrices can be plotted.") (define-public r-upsetr (package (name "r-upsetr") - (version "1.3.3") + (version "1.4.0") (source (origin (method url-fetch) (uri (cran-uri "UpSetR" version)) (sha256 (base32 - "08vj7l92b8fpqyqwxshll2mhk3yhgyr74axvr2lf29z78bapymhz")))) + "007i0njnjjy7vbrxabwav7a1kk2n0hn2mkvqsdzzfk10ckp5y7im")))) (properties `((upstream-name . "UpSetR"))) (build-system r-build-system) (propagated-inputs @@ -12895,21 +12900,21 @@ SELECT or UPDATE queries to an end-point.") (define-public r-bookdown (package (name "r-bookdown") - (version "0.10") + (version "0.11") (source (origin (method url-fetch) (uri (cran-uri "bookdown" version)) (sha256 (base32 - "0xk57p9iyj7rqrwb89q3pm8p29ca615fj1h9blf5yb3zhga4bjk3")))) + "0w4fkv5fqiaqgkx44p0s161imf29zir9742126xkz1pl1j25jn1r")))) (build-system r-build-system) (propagated-inputs `(("r-htmltools" ,r-htmltools) ("r-knitr" ,r-knitr) ("r-rmarkdown" ,r-rmarkdown) ("r-tinytex" ,r-tinytex) - ("r-yaml" ,r-yaml) - ("r-xfun" ,r-xfun))) + ("r-xfun" ,r-xfun) + ("pandoc" ,ghc-pandoc))) (home-page "https://github.com/rstudio/bookdown") (synopsis "Authoring books and technical documents with R markdown") (description "This package provides output formats and utilities for @@ -12941,14 +12946,14 @@ that accept short and long options.") (define-public r-wgcna (package (name "r-wgcna") - (version "1.67") + (version "1.68") (source (origin (method url-fetch) (uri (cran-uri "WGCNA" version)) (sha256 (base32 - "09387w85lxvwr8ax2i2h602b4dgfv4wbvsl9aj1q0b1vfs4rkk69")))) + "1s7gy5vd7x67hpgli8r7ba2z99w3psiyv5hqmrh94zw141dg210a")))) (properties `((upstream-name . "WGCNA"))) (build-system r-build-system) (propagated-inputs @@ -14398,14 +14403,14 @@ includes data sets from oceanography.") (define-public r-ggfortify (package (name "r-ggfortify") - (version "0.4.6") + (version "0.4.7") (source (origin (method url-fetch) (uri (cran-uri "ggfortify" version)) (sha256 (base32 - "1clyha9f9ygma64xbgi78lxsp1203f2ashqhhdpm71nr6w91bm88")))) + "1wk9j0xg5hj9i1vf62qjiphv8cbsgq7y6baay3pfl3wyb2dwgci0")))) (build-system r-build-system) (propagated-inputs `(("r-dplyr" ,r-dplyr) |