diff options
| -rw-r--r-- | gnu/local.mk | 1 | ||||
| -rw-r--r-- | gnu/packages/patches/python-pandas-skip-failing-tests.patch | 49 | ||||
| -rw-r--r-- | gnu/packages/python.scm | 38 |
3 files changed, 31 insertions, 57 deletions
diff --git a/gnu/local.mk b/gnu/local.mk index 9cf14c8b08..0a7810df9d 100644 --- a/gnu/local.mk +++ b/gnu/local.mk @@ -1026,7 +1026,6 @@ dist_patch_DATA = \ %D%/packages/patches/python-scikit-learn-fix-test-non-determinism.patch \ %D%/packages/patches/python-configobj-setuptools.patch \ %D%/packages/patches/python-faker-fix-build-32bit.patch \ - %D%/packages/patches/python-pandas-skip-failing-tests.patch \ %D%/packages/patches/python-paste-remove-website-test.patch \ %D%/packages/patches/python-paste-remove-timing-test.patch \ %D%/packages/patches/python-pygit2-disable-network-tests.patch \ diff --git a/gnu/packages/patches/python-pandas-skip-failing-tests.patch b/gnu/packages/patches/python-pandas-skip-failing-tests.patch deleted file mode 100644 index 8ac330c18f..0000000000 --- a/gnu/packages/patches/python-pandas-skip-failing-tests.patch +++ /dev/null @@ -1,49 +0,0 @@ -These tests fail on 32bit architectures. - -Upstream bug URL: https://github.com/pandas-dev/pandas/issues/14866 - ---- a/pandas/tests/indexes/common.py 2017-03-09 00:10:26.063996176 +0100 -+++ b/pandas/tests/indexes/common.py 2017-03-09 00:10:53.152844191 +0100 -@@ -119,20 +119,6 @@ - with tm.assertRaisesRegexp(ValueError, 'Invalid fill method'): - idx.get_indexer(idx, method='invalid') - -- def test_ndarray_compat_properties(self): -- -- idx = self.create_index() -- self.assertTrue(idx.T.equals(idx)) -- self.assertTrue(idx.transpose().equals(idx)) -- -- values = idx.values -- for prop in self._compat_props: -- self.assertEqual(getattr(idx, prop), getattr(values, prop)) -- -- # test for validity -- idx.nbytes -- idx.values.nbytes -- - def test_repr_roundtrip(self): - - idx = self.create_index() ---- a/pandas/tools/tests/test_tile.py 2017-03-08 17:47:39.762261841 +0100 -+++ b/pandas/tools/tests/test_tile.py 2017-03-08 17:48:26.831780495 +0100 -@@ -271,19 +271,6 @@ - np.array([0, 0, 1, 1], dtype=np.int8)) - tm.assert_numpy_array_equal(bins, np.array([0, 1.5, 3])) - -- def test_single_bin(self): -- # issue 14652 -- expected = Series([0, 0]) -- -- s = Series([9., 9.]) -- result = cut(s, 1, labels=False) -- tm.assert_series_equal(result, expected) -- -- s = Series([-9., -9.]) -- result = cut(s, 1, labels=False) -- tm.assert_series_equal(result, expected) -- -- - def curpath(): - pth, _ = os.path.split(os.path.abspath(__file__)) - return pth diff --git a/gnu/packages/python.scm b/gnu/packages/python.scm index ac8927c0f1..6e08e38b45 100644 --- a/gnu/packages/python.scm +++ b/gnu/packages/python.scm @@ -1066,24 +1066,48 @@ human-friendly syntax.") (define-public python-pandas (package (name "python-pandas") - (version "0.19.2") + (version "0.22.0") (source (origin (method url-fetch) (uri (pypi-uri "pandas" version)) (sha256 - (base32 "0540cnbwy2hc4hv2sxfs8i47xi91qzvzxfn80dl785ibiicly3vg")) - (patches - (search-patches "python-pandas-skip-failing-tests.patch")))) + (base32 "0v0fi2i10kwnmlpsl6f1fgajcpx3q6766qf6xqi5kw3ivn8l1aa4")))) (build-system python-build-system) + (arguments + `(#:modules ((guix build utils) + (guix build python-build-system) + (ice-9 ftw) + (srfi srfi-26)) + #:phases (modify-phases %standard-phases + (replace 'check + (lambda _ + (let ((build-directory + (string-append + (getcwd) "/build/" + (car (scandir "build" + (cut string-prefix? "lib." <>)))))) + (with-directory-excursion build-directory + ;; Delete tests that require "moto" which is not yet in Guix. + (for-each delete-file + '("pandas/tests/io/conftest.py" + "pandas/tests/io/json/test_compression.py" + "pandas/tests/io/test_excel.py")) + (invoke "pytest" "-v" "pandas" "-k" + (string-append + "not network and not disabled" + ;; XXX: Due to the deleted tests above. + " and not test_read_s3_jsonl"))))))))) (propagated-inputs `(("python-numpy" ,python-numpy) ("python-pytz" ,python-pytz) ("python-dateutil" ,python-dateutil))) (native-inputs - `(("python-nose" ,python-nose) - ("python-cython" ,python-cython))) - (home-page "http://pandas.pydata.org") + `(("python-cython" ,python-cython) + ("python-lxml" ,python-lxml) + ("python-nose" ,python-nose) + ("python-pytest" ,python-pytest))) + (home-page "https://pandas.pydata.org") (synopsis "Data structures for data analysis, time series, and statistics") (description "Pandas is a Python package providing fast, flexible, and expressive data |