diff options
| -rw-r--r-- | gnu/local.mk | 1 | ||||
| -rw-r--r-- | gnu/packages/bioinformatics.scm | 3 | ||||
| -rw-r--r-- | gnu/packages/patches/plink-endian-detection.patch | 30 |
3 files changed, 33 insertions, 1 deletions
diff --git a/gnu/local.mk b/gnu/local.mk index a7566382dc..d71d1c4efc 100644 --- a/gnu/local.mk +++ b/gnu/local.mk @@ -745,6 +745,7 @@ dist_patch_DATA = \ %D%/packages/patches/pinball-system-ltdl.patch \ %D%/packages/patches/pingus-sdl-libs-config.patch \ %D%/packages/patches/plink-1.07-unclobber-i.patch \ + %D%/packages/patches/plink-endian-detection.patch \ %D%/packages/patches/plotutils-libpng-jmpbuf.patch \ %D%/packages/patches/polkit-drop-test.patch \ %D%/packages/patches/portaudio-audacity-compat.patch \ diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 28d138855d..7da6f5546b 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -4279,7 +4279,8 @@ accessed/downloaded on demand across HTTP.") version "-src.zip")) (sha256 (base32 "0as8gxm4pjyc8dxmm1sl873rrd7wn5qs0l29nqfnl31x8i467xaa")) - (patches (search-patches "plink-1.07-unclobber-i.patch")))) + (patches (search-patches "plink-1.07-unclobber-i.patch" + "plink-endian-detection.patch")))) (build-system gnu-build-system) (arguments '(#:tests? #f ;no "check" target diff --git a/gnu/packages/patches/plink-endian-detection.patch b/gnu/packages/patches/plink-endian-detection.patch new file mode 100644 index 0000000000..4d6185512f --- /dev/null +++ b/gnu/packages/patches/plink-endian-detection.patch @@ -0,0 +1,30 @@ +This patch is borrowed from Debian's patches for plink + +Author: Peter Green <plugwash@p10link.net> +Puropose: Fallback to endian.h if all else fails on 64bit machines +Closes: #528659 +Forwarded: Shaun Purcell <plink@chgr.mgh.harvard.edu> +License: same as plink itself. +=================================================================== +--- plink-1.06.orig/Rsrv.h 2009-05-15 03:35:29.000000000 +0100 ++++ plink-1.06/Rsrv.h 2009-05-15 03:35:41.000000000 +0100 +@@ -313,7 +313,18 @@ + #define __BIG_ENDIAN__ 1 + #define SWAPEND 1 + #elif ! defined Win32 /* Windows is little-endian is most cases, anywhere else we're stuck */ +-#error "Cannot determine endianness. Make sure config.h is included or __{BIG|LITTLE}_ENDIAN__ is defined ." ++ //try endian.h before we finally bail out ++ #include <endian.h> ++ #if __BYTE_ORDER == __LITTLE_ENDIAN ++ #warning using little endian based on information from endian.h ++ #define __LITTLE_ENDIAN__ 1 ++ #elif __BYTE_ORDER == __BIG_ENDIAN ++ #warning using big endian based on information from endian.h ++ #define __BIG_ENDIAN__ 1 ++ #define SWAPEND 1 ++ #else ++ #error "Cannot determine endianness. Make sure config.h is included or __{BIG|LITTLE}_ENDIAN__ is defined ." ++ #endif + #endif + + /* FIXME: all the mess below needs more efficient implementation - the current one is so messy to work around alignment problems on some platforms like Sun and HP 9000 */ |