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| author | Ricardo Wurmus <rekado@elephly.net> | 2021-11-30 20:28:51 +0100 |
|---|---|---|
| committer | Ricardo Wurmus <rekado@elephly.net> | 2021-11-30 20:30:02 +0100 |
| commit | 53a16a2143bbc3cc5f9f014ab6fb6afc9d0064d6 (patch) | |
| tree | eca76bde69438ea6f350341194f5b7d2f4e237a2 /gnu/packages/cran.scm | |
| parent | 79bc8123574f8877c82577af85138e6bf70995c5 (diff) | |
| download | guix-53a16a2143bbc3cc5f9f014ab6fb6afc9d0064d6.tar guix-53a16a2143bbc3cc5f9f014ab6fb6afc9d0064d6.tar.gz | |
gnu: Add r-seuratdata.
* gnu/packages/cran.scm (r-seuratdata): New variable.
Diffstat (limited to 'gnu/packages/cran.scm')
| -rw-r--r-- | gnu/packages/cran.scm | 38 |
1 files changed, 38 insertions, 0 deletions
diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 504da4e3da..5f12cc55bf 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -28740,6 +28740,44 @@ rapid and on-disk conversion between h5Seurat and AnnData objects, with the goal of enhancing interoperability between Seurat and Scanpy.") (license license:gpl3)))) +(define-public r-seuratdata + (let ((commit "b59556b24d7d6728a5744c9c715dd5f7f32ed7a5") + (revision "1")) + (package + (name "r-seuratdata") + (version (git-version "0.2.1" revision commit)) + (source + (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/satijalab/seurat-data") + (commit commit))) + (file-name (git-file-name name version)) + (sha256 + (base32 "1xfdmdmgn4r0z6w4cxa98ic6xk8i6qz054r215dvqbjs1vydsbf9")))) + (properties `((upstream-name . "SeuratData"))) + (build-system r-build-system) + (arguments + `(#:phases + (modify-phases %standard-phases + ;; When there is no HOME directory, this package will fail to load + ;; the included list of packages. + (add-after 'unpack 'set-HOME + (lambda _ (setenv "HOME" "/tmp")))))) + (propagated-inputs + `(("r-cli" ,r-cli) + ("r-crayon" ,r-crayon) + ("r-rappdirs" ,r-rappdirs))) + (home-page "https://github.com/satijalab/seurat-data") + (synopsis "Install and manage Seurat datasets") + (description + "Single cell RNA sequencing datasets can be large, consisting of +matrices that contain expression data for several thousand features across +several thousand cells. This package is designed to easily install, manage, +and learn about various single-cell datasets, provided Seurat objects and +distributed as independent packages.") + (license license:gpl3)))) + (define-public r-phangorn (package (name "r-phangorn") |